RNA–Protein interactions for RNA: ENST00000565003.5

CMTM3-209, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

TSL 3 BASIC

Gene CMTM3, Length 643 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-209ENST00000565003 NISCHQ9Y2I1 1504 aa24.96■■□□□ 1.59
CMTM3-209ENST00000565003 CCDC180Q9P1Z9 1646 aa22.31■■□□□ 1.16
CMTM3-209ENST00000565003 ABCC9O60706 1549 aa22.15■■□□□ 1.14
CMTM3-209ENST00000565003 RB1CC1Q8TDY2 1594 aa21.14■□□□□ 0.97
CMTM3-209ENST00000565003 NACADO15069 1562 aa21.05■□□□□ 0.96
CMTM3-209ENST00000565003 DCAF8L2P0C7V8 631 aa20.94■□□□□ 0.94
CMTM3-209ENST00000565003 MYO15BQ96JP2 1530 aa20.83■□□□□ 0.92
CMTM3-209ENST00000565003 ZCCHC6Q5VYS8 1495 aaKnown RBP20.75■□□□□ 0.91
CMTM3-209ENST00000565003 UNC13AQ9UPW8 1703 aa20.69■□□□□ 0.9
CMTM3-209ENST00000565003 PABPN1Q86U42 306 aaKnown RBP eCLIP20.64■□□□□ 0.89
CMTM3-209ENST00000565003 DCAF1Q9Y4B6 1507 aa20.63■□□□□ 0.89
CMTM3-209ENST00000565003 DNAJC5BQ9UF47 199 aa20.61■□□□□ 0.89
CMTM3-209ENST00000565003 BICRAQ9NZM4 1560 aa20.55■□□□□ 0.88
CMTM3-209ENST00000565003 SCRIBQ14160 1630 aa20.37■□□□□ 0.85
CMTM3-209ENST00000565003 SHROOM4Q9ULL8 1493 aa20.26■□□□□ 0.83
CMTM3-209ENST00000565003 EIF4G1Q04637 1599 aaKnown RBP20.02■□□□□ 0.8
CMTM3-209ENST00000565003 CC2D2AQ9P2K1 1620 aa20.01■□□□□ 0.79
CMTM3-209ENST00000565003 CECR2Q9BXF3 1484 aa19.92■□□□□ 0.78
CMTM3-209ENST00000565003 SMARCA4P51532 1647 aa19.44■□□□□ 0.7
CMTM3-209ENST00000565003 NCAPD3P42695 1498 aa19.43■□□□□ 0.7
CMTM3-209ENST00000565003 ATAD2BQ9ULI0 1458 aa19.41■□□□□ 0.7
CMTM3-209ENST00000565003 BAZ1AQ9NRL2 1556 aaPredicted RBP19.36■□□□□ 0.69
CMTM3-209ENST00000565003 SMARCA2P51531 1590 aa19.35■□□□□ 0.69
CMTM3-209ENST00000565003 HMGXB3Q12766 1538 aa19.31■□□□□ 0.68
CMTM3-209ENST00000565003 PEG3Q9GZU2 1588 aa19.26■□□□□ 0.67
CMTM3-209ENST00000565003 MROH2BQ7Z745 1585 aa19.25■□□□□ 0.67
CMTM3-209ENST00000565003 BAZ1BQ9UIG0 1483 aaKnown RBP19.22■□□□□ 0.67
CMTM3-209ENST00000565003 NESP48681 1621 aa19.09■□□□□ 0.65
CMTM3-209ENST00000565003 ERCC6Q03468 1493 aa19.09■□□□□ 0.65
CMTM3-209ENST00000565003 WIZO95785 1651 aa19.03■□□□□ 0.64
CMTM3-209ENST00000565003 CUX2O14529 1486 aa18.99■□□□□ 0.63
CMTM3-209ENST00000565003 LAMC3Q9Y6N6 1575 aa18.96■□□□□ 0.63
CMTM3-209ENST00000565003 RSF1Q96T23 1441 aaPredicted RBP18.91■□□□□ 0.62
CMTM3-209ENST00000565003 THOC2Q8NI27 1593 aaKnown RBP18.86■□□□□ 0.61
CMTM3-209ENST00000565003 CADPSQ9ULU8 1353 aa18.84■□□□□ 0.61
CMTM3-209ENST00000565003 KIF21AQ7Z4S6 1674 aa18.84■□□□□ 0.61
CMTM3-209ENST00000565003 PDS5BQ9NTI5 1447 aa18.83■□□□□ 0.6
CMTM3-209ENST00000565003 TOP2AP11388 1531 aaKnown RBP18.8■□□□□ 0.6
CMTM3-209ENST00000565003 DNAJC5Q9H3Z4 198 aa18.75■□□□□ 0.59
CMTM3-209ENST00000565003 CFTRP13569 1480 aa18.68■□□□□ 0.58
CMTM3-209ENST00000565003 MRC2Q9UBG0 1479 aa18.68■□□□□ 0.58
CMTM3-209ENST00000565003 FANCD2Q9BXW9 1451 aa18.65■□□□□ 0.58
CMTM3-209ENST00000565003 WDR62O43379 1518 aa18.64■□□□□ 0.58
CMTM3-209ENST00000565003 CEP164Q9UPV0 1460 aa18.64■□□□□ 0.57
CMTM3-209ENST00000565003 CCDC88BA6NC98 1476 aa18.58■□□□□ 0.56
CMTM3-209ENST00000565003 PRDM2Q13029 1718 aa18.51■□□□□ 0.55
CMTM3-209ENST00000565003 URB2Q14146 1524 aaKnown RBP18.49■□□□□ 0.55
CMTM3-209ENST00000565003 TOPBP1Q92547 1522 aa18.32■□□□□ 0.52
CMTM3-209ENST00000565003 IFT140Q96RY7 1462 aa18.26■□□□□ 0.51
CMTM3-209ENST00000565003 DNMBPQ6XZF7 1577 aa18.25■□□□□ 0.51
CMTM3-209ENST00000565003 ABCC8Q09428 1581 aa18.25■□□□□ 0.51
CMTM3-209ENST00000565003 ZNF608Q9ULD9 1512 aaPredicted RBP18.23■□□□□ 0.51
CMTM3-209ENST00000565003 SUPT5HO00267 1087 aaKnown RBP18.19■□□□□ 0.5
CMTM3-209ENST00000565003 POLA1P09884 1462 aaPredicted RBP18.14■□□□□ 0.5
CMTM3-209ENST00000565003 EIF4G3O43432 1585 aaKnown RBP18.14■□□□□ 0.49
CMTM3-209ENST00000565003 TARBP1Q13395 1621 aaKnown RBP18.14■□□□□ 0.49
CMTM3-209ENST00000565003 OSCARQ8IYS5 282 aa18.12■□□□□ 0.49
CMTM3-209ENST00000565003 CUX1P39880 1505 aa18.08■□□□□ 0.48
CMTM3-209ENST00000565003 AQRO60306 1485 aaKnown RBP eCLIP18.07■□□□□ 0.48
CMTM3-209ENST00000565003 RAD54L2Q9Y4B4 1467 aa18.07■□□□□ 0.48
CMTM3-209ENST00000565003 FGD5Q6ZNL6 1462 aa18.06■□□□□ 0.48
CMTM3-209ENST00000565003 SOGA1O94964 1423 aa18.05■□□□□ 0.48
CMTM3-209ENST00000565003 TRIM41Q8WV44 630 aa18.01■□□□□ 0.47
CMTM3-209ENST00000565003 TDRD9Q8NDG6 1382 aaKnown RBP18■□□□□ 0.47
CMTM3-209ENST00000565003 CHD1O14646 1710 aa17.96■□□□□ 0.47
CMTM3-209ENST00000565003 WDR97A6NE52 1622 aa17.94■□□□□ 0.46
CMTM3-209ENST00000565003 RIMBP3CA6NJZ7 1639 aa17.91■□□□□ 0.46
CMTM3-209ENST00000565003 RIMBP3BA6NNM3 1639 aa17.91■□□□□ 0.46
CMTM3-209ENST00000565003 RIMBP3Q9UFD9 1639 aa17.91■□□□□ 0.46
CMTM3-209ENST00000565003 SNAPC4Q5SXM2 1469 aa17.91■□□□□ 0.46
CMTM3-209ENST00000565003 ARHGEF11O15085 1522 aa17.88■□□□□ 0.45
CMTM3-209ENST00000565003 FBLN2P98095 1184 aa17.88■□□□□ 0.45
CMTM3-209ENST00000565003 GRIN2BQ13224 1484 aa17.87■□□□□ 0.45
CMTM3-209ENST00000565003 MAGI1Q96QZ7 1491 aaPredicted RBP17.86■□□□□ 0.45
CMTM3-209ENST00000565003 ABCA10Q8WWZ4 1543 aa17.86■□□□□ 0.45
CMTM3-209ENST00000565003 SYNJ1O43426 1573 aa17.83■□□□□ 0.45
CMTM3-209ENST00000565003 WRNQ14191 1432 aaPredicted RBP eCLIP17.83■□□□□ 0.45
CMTM3-209ENST00000565003 PBRM1Q86U86 1689 aa17.83■□□□□ 0.44
CMTM3-209ENST00000565003 TOP2BQ02880 1626 aa17.83■□□□□ 0.44
CMTM3-209ENST00000565003 ABCA5Q8WWZ7 1642 aa17.83■□□□□ 0.44
CMTM3-209ENST00000565003 BIVM-ERCC5R4GMW8 1640 aa17.83■□□□□ 0.44
CMTM3-209ENST00000565003 GAPVD1Q14C86 1478 aa17.82■□□□□ 0.44
CMTM3-209ENST00000565003 SYNJ2O15056 1496 aa17.8■□□□□ 0.44
CMTM3-209ENST00000565003 CHMP7Q8WUX9 453 aaPredicted RBP17.78■□□□□ 0.44
CMTM3-209ENST00000565003 CLASP1Q7Z460 1538 aa17.77■□□□□ 0.44
CMTM3-209ENST00000565003 ARAP1Q96P48 1450 aa17.73■□□□□ 0.43
CMTM3-209ENST00000565003 CYB5RLQ6IPT4 315 aa17.7■□□□□ 0.42
CMTM3-209ENST00000565003 ADAMTS12P58397 1594 aa17.68■□□□□ 0.42
CMTM3-209ENST00000565003 GRIN2AQ12879 1464 aa17.65■□□□□ 0.42
CMTM3-209ENST00000565003 ERICH3Q5RHP9 1530 aa17.62■□□□□ 0.41
CMTM3-209ENST00000565003 FHAD1B1AJZ9 1412 aa17.61■□□□□ 0.41
CMTM3-209ENST00000565003 CEP170Q5SW79 1584 aa17.6■□□□□ 0.41
CMTM3-209ENST00000565003 NUP160Q12769 1436 aa17.59■□□□□ 0.41
CMTM3-209ENST00000565003 ERCC6L2Q5T890 1561 aa17.53■□□□□ 0.4
CMTM3-209ENST00000565003 SHROOM2Q13796 1616 aa17.5■□□□□ 0.39
CMTM3-209ENST00000565003 KIF27Q86VH2 1401 aa17.47■□□□□ 0.39
CMTM3-209ENST00000565003 IGF1RP08069 1367 aa17.44■□□□□ 0.38
CMTM3-209ENST00000565003 RUSC2Q8N2Y8 1516 aa17.43■□□□□ 0.38
CMTM3-209ENST00000565003 TRHP20396 242 aaPredicted RBP17.43■□□□□ 0.38
CMTM3-209ENST00000565003 CUL7Q14999 1698 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms