RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 NISCHQ9Y2I1 1504 aa26.96■■□□□ 1.91
VPS39-208ENST00000564994 CCDC180Q9P1Z9 1646 aa24.12■■□□□ 1.45
VPS39-208ENST00000564994 ABCC9O60706 1549 aa23.91■■□□□ 1.42
VPS39-208ENST00000564994 RB1CC1Q8TDY2 1594 aa22.84■■□□□ 1.25
VPS39-208ENST00000564994 NACADO15069 1562 aa22.73■■□□□ 1.23
VPS39-208ENST00000564994 DCAF8L2P0C7V8 631 aa22.62■■□□□ 1.21
VPS39-208ENST00000564994 MYO15BQ96JP2 1530 aa22.48■■□□□ 1.19
VPS39-208ENST00000564994 UNC13AQ9UPW8 1703 aa22.42■■□□□ 1.18
VPS39-208ENST00000564994 ZCCHC6Q5VYS8 1495 aaKnown RBP22.4■■□□□ 1.18
VPS39-208ENST00000564994 PABPN1Q86U42 306 aaKnown RBP eCLIP22.28■■□□□ 1.16
VPS39-208ENST00000564994 DCAF1Q9Y4B6 1507 aa22.27■■□□□ 1.16
VPS39-208ENST00000564994 DNAJC5BQ9UF47 199 aa22.27■■□□□ 1.16
VPS39-208ENST00000564994 BICRAQ9NZM4 1560 aa22.22■■□□□ 1.15
VPS39-208ENST00000564994 SCRIBQ14160 1630 aa22■■□□□ 1.11
VPS39-208ENST00000564994 SHROOM4Q9ULL8 1493 aa21.86■■□□□ 1.09
VPS39-208ENST00000564994 CC2D2AQ9P2K1 1620 aa21.62■■□□□ 1.05
VPS39-208ENST00000564994 EIF4G1Q04637 1599 aaKnown RBP21.62■■□□□ 1.05
VPS39-208ENST00000564994 CECR2Q9BXF3 1484 aa21.5■■□□□ 1.03
VPS39-208ENST00000564994 SMARCA4P51532 1647 aa21■□□□□ 0.95
VPS39-208ENST00000564994 NCAPD3P42695 1498 aa20.98■□□□□ 0.95
VPS39-208ENST00000564994 ATAD2BQ9ULI0 1458 aa20.95■□□□□ 0.94
VPS39-208ENST00000564994 BAZ1AQ9NRL2 1556 aaPredicted RBP20.9■□□□□ 0.94
VPS39-208ENST00000564994 SMARCA2P51531 1590 aa20.89■□□□□ 0.94
VPS39-208ENST00000564994 HMGXB3Q12766 1538 aa20.84■□□□□ 0.93
VPS39-208ENST00000564994 MROH2BQ7Z745 1585 aa20.8■□□□□ 0.92
VPS39-208ENST00000564994 PEG3Q9GZU2 1588 aa20.8■□□□□ 0.92
VPS39-208ENST00000564994 BAZ1BQ9UIG0 1483 aaKnown RBP20.75■□□□□ 0.91
VPS39-208ENST00000564994 NESP48681 1621 aa20.62■□□□□ 0.89
VPS39-208ENST00000564994 ERCC6Q03468 1493 aa20.59■□□□□ 0.89
VPS39-208ENST00000564994 WIZO95785 1651 aa20.58■□□□□ 0.89
VPS39-208ENST00000564994 CUX2O14529 1486 aa20.5■□□□□ 0.87
VPS39-208ENST00000564994 LAMC3Q9Y6N6 1575 aa20.48■□□□□ 0.87
VPS39-208ENST00000564994 RSF1Q96T23 1441 aaPredicted RBP20.43■□□□□ 0.86
VPS39-208ENST00000564994 KIF21AQ7Z4S6 1674 aa20.38■□□□□ 0.85
VPS39-208ENST00000564994 THOC2Q8NI27 1593 aaKnown RBP20.38■□□□□ 0.85
VPS39-208ENST00000564994 CADPSQ9ULU8 1353 aa20.34■□□□□ 0.85
VPS39-208ENST00000564994 PDS5BQ9NTI5 1447 aa20.32■□□□□ 0.84
VPS39-208ENST00000564994 TOP2AP11388 1531 aaKnown RBP20.3■□□□□ 0.84
VPS39-208ENST00000564994 DNAJC5Q9H3Z4 198 aa20.26■□□□□ 0.83
VPS39-208ENST00000564994 CFTRP13569 1480 aa20.17■□□□□ 0.82
VPS39-208ENST00000564994 MRC2Q9UBG0 1479 aa20.16■□□□□ 0.82
VPS39-208ENST00000564994 WDR62O43379 1518 aa20.12■□□□□ 0.81
VPS39-208ENST00000564994 FANCD2Q9BXW9 1451 aa20.12■□□□□ 0.81
VPS39-208ENST00000564994 CEP164Q9UPV0 1460 aa20.11■□□□□ 0.81
VPS39-208ENST00000564994 CCDC88BA6NC98 1476 aa20.07■□□□□ 0.8
VPS39-208ENST00000564994 PRDM2Q13029 1718 aa20.05■□□□□ 0.8
VPS39-208ENST00000564994 URB2Q14146 1524 aaKnown RBP19.97■□□□□ 0.79
VPS39-208ENST00000564994 TOPBP1Q92547 1522 aa19.78■□□□□ 0.76
VPS39-208ENST00000564994 DNMBPQ6XZF7 1577 aa19.72■□□□□ 0.75
VPS39-208ENST00000564994 ABCC8Q09428 1581 aa19.71■□□□□ 0.75
VPS39-208ENST00000564994 IFT140Q96RY7 1462 aa19.7■□□□□ 0.74
VPS39-208ENST00000564994 ZNF608Q9ULD9 1512 aaPredicted RBP19.69■□□□□ 0.74
VPS39-208ENST00000564994 SUPT5HO00267 1087 aaKnown RBP19.64■□□□□ 0.73
VPS39-208ENST00000564994 TARBP1Q13395 1621 aaKnown RBP19.62■□□□□ 0.73
VPS39-208ENST00000564994 EIF4G3O43432 1585 aaKnown RBP19.6■□□□□ 0.73
VPS39-208ENST00000564994 POLA1P09884 1462 aaPredicted RBP19.59■□□□□ 0.73
VPS39-208ENST00000564994 OSCARQ8IYS5 282 aa19.57■□□□□ 0.72
VPS39-208ENST00000564994 CUX1P39880 1505 aa19.52■□□□□ 0.72
VPS39-208ENST00000564994 AQRO60306 1485 aaKnown RBP eCLIP19.52■□□□□ 0.72
VPS39-208ENST00000564994 RAD54L2Q9Y4B4 1467 aa19.52■□□□□ 0.72
VPS39-208ENST00000564994 FGD5Q6ZNL6 1462 aa19.49■□□□□ 0.71
VPS39-208ENST00000564994 SOGA1O94964 1423 aa19.48■□□□□ 0.71
VPS39-208ENST00000564994 TRIM41Q8WV44 630 aa19.44■□□□□ 0.7
VPS39-208ENST00000564994 CHD1O14646 1710 aa19.44■□□□□ 0.7
VPS39-208ENST00000564994 TDRD9Q8NDG6 1382 aaKnown RBP19.43■□□□□ 0.7
VPS39-208ENST00000564994 WDR97A6NE52 1622 aa19.39■□□□□ 0.69
VPS39-208ENST00000564994 RIMBP3CA6NJZ7 1639 aa19.36■□□□□ 0.69
VPS39-208ENST00000564994 RIMBP3BA6NNM3 1639 aa19.36■□□□□ 0.69
VPS39-208ENST00000564994 RIMBP3Q9UFD9 1639 aa19.36■□□□□ 0.69
VPS39-208ENST00000564994 SNAPC4Q5SXM2 1469 aa19.33■□□□□ 0.68
VPS39-208ENST00000564994 ARHGEF11O15085 1522 aa19.3■□□□□ 0.68
VPS39-208ENST00000564994 FBLN2P98095 1184 aa19.3■□□□□ 0.68
VPS39-208ENST00000564994 PBRM1Q86U86 1689 aa19.29■□□□□ 0.68
VPS39-208ENST00000564994 GRIN2BQ13224 1484 aa19.28■□□□□ 0.68
VPS39-208ENST00000564994 BIVM-ERCC5R4GMW8 1640 aa19.28■□□□□ 0.68
VPS39-208ENST00000564994 ABCA10Q8WWZ4 1543 aa19.27■□□□□ 0.68
VPS39-208ENST00000564994 MAGI1Q96QZ7 1491 aaPredicted RBP19.27■□□□□ 0.67
VPS39-208ENST00000564994 SYNJ1O43426 1573 aa19.27■□□□□ 0.67
VPS39-208ENST00000564994 TOP2BQ02880 1626 aa19.26■□□□□ 0.67
VPS39-208ENST00000564994 ABCA5Q8WWZ7 1642 aa19.26■□□□□ 0.67
VPS39-208ENST00000564994 GAPVD1Q14C86 1478 aa19.25■□□□□ 0.67
VPS39-208ENST00000564994 WRNQ14191 1432 aaPredicted RBP eCLIP19.25■□□□□ 0.67
VPS39-208ENST00000564994 SYNJ2O15056 1496 aa19.21■□□□□ 0.67
VPS39-208ENST00000564994 CLASP1Q7Z460 1538 aa19.2■□□□□ 0.66
VPS39-208ENST00000564994 CHMP7Q8WUX9 453 aaPredicted RBP19.19■□□□□ 0.66
VPS39-208ENST00000564994 ARAP1Q96P48 1450 aa19.14■□□□□ 0.65
VPS39-208ENST00000564994 CYB5RLQ6IPT4 315 aa19.12■□□□□ 0.65
VPS39-208ENST00000564994 ADAMTS12P58397 1594 aa19.09■□□□□ 0.65
VPS39-208ENST00000564994 GRIN2AQ12879 1464 aa19.05■□□□□ 0.64
VPS39-208ENST00000564994 ERICH3Q5RHP9 1530 aa19.03■□□□□ 0.64
VPS39-208ENST00000564994 FHAD1B1AJZ9 1412 aa19.01■□□□□ 0.63
VPS39-208ENST00000564994 CEP170Q5SW79 1584 aa19.01■□□□□ 0.63
VPS39-208ENST00000564994 NUP160Q12769 1436 aa18.99■□□□□ 0.63
VPS39-208ENST00000564994 ERCC6L2Q5T890 1561 aa18.93■□□□□ 0.62
VPS39-208ENST00000564994 SHROOM2Q13796 1616 aa18.9■□□□□ 0.62
VPS39-208ENST00000564994 KIF27Q86VH2 1401 aa18.85■□□□□ 0.61
VPS39-208ENST00000564994 IGF1RP08069 1367 aa18.84■□□□□ 0.61
VPS39-208ENST00000564994 RUSC2Q8N2Y8 1516 aa18.82■□□□□ 0.6
VPS39-208ENST00000564994 TRHP20396 242 aaPredicted RBP18.81■□□□□ 0.6
VPS39-208ENST00000564994 CUL7Q14999 1698 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms