RNA–Protein interactions for RNA: ENST00000564542.5

CDR2-204, Transcript of cerebellar degeneration related protein 2, humanhuman

TSL 5

Gene CDR2, Length 1,056 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDR2-204ENST00000564542 NISCHQ9Y2I1 1504 aa35.67■■■■□ 3.3
CDR2-204ENST00000564542 ABCC9O60706 1549 aa32.15■■■□□ 2.74
CDR2-204ENST00000564542 CCDC180Q9P1Z9 1646 aa32.14■■■□□ 2.74
CDR2-204ENST00000564542 RB1CC1Q8TDY2 1594 aa30.61■■■□□ 2.49
CDR2-204ENST00000564542 NACADO15069 1562 aa30.37■■■□□ 2.45
CDR2-204ENST00000564542 DNAJC5BQ9UF47 199 aa30.2■■■□□ 2.43
CDR2-204ENST00000564542 DCAF8L2P0C7V8 631 aa30.03■■■□□ 2.4
CDR2-204ENST00000564542 MYO15BQ96JP2 1530 aa29.94■■■□□ 2.38
CDR2-204ENST00000564542 UNC13AQ9UPW8 1703 aa29.93■■■□□ 2.38
CDR2-204ENST00000564542 PABPN1Q86U42 306 aaKnown RBP eCLIP29.85■■■□□ 2.37
CDR2-204ENST00000564542 BICRAQ9NZM4 1560 aa29.71■■■□□ 2.35
CDR2-204ENST00000564542 ZCCHC6Q5VYS8 1495 aaKnown RBP29.57■■■□□ 2.32
CDR2-204ENST00000564542 DCAF1Q9Y4B6 1507 aa29.5■■■□□ 2.31
CDR2-204ENST00000564542 SHROOM4Q9ULL8 1493 aa29.36■■■□□ 2.29
CDR2-204ENST00000564542 SCRIBQ14160 1630 aa29.21■■■□□ 2.27
CDR2-204ENST00000564542 CC2D2AQ9P2K1 1620 aa29.08■■■□□ 2.25
CDR2-204ENST00000564542 EIF4G1Q04637 1599 aaKnown RBP29■■■□□ 2.23
CDR2-204ENST00000564542 CECR2Q9BXF3 1484 aa28.99■■■□□ 2.23
CDR2-204ENST00000564542 NCAPD3P42695 1498 aa28.02■■■□□ 2.08
CDR2-204ENST00000564542 ATAD2BQ9ULI0 1458 aa27.9■■■□□ 2.06
CDR2-204ENST00000564542 SMARCA4P51532 1647 aa27.88■■■□□ 2.05
CDR2-204ENST00000564542 SMARCA2P51531 1590 aa27.86■■■□□ 2.05
CDR2-204ENST00000564542 DNAJC5Q9H3Z4 198 aa27.85■■■□□ 2.05
CDR2-204ENST00000564542 HMGXB3Q12766 1538 aa27.84■■■□□ 2.05
CDR2-204ENST00000564542 CUX2O14529 1486 aa27.82■■■□□ 2.04
CDR2-204ENST00000564542 ERCC6Q03468 1493 aa27.78■■■□□ 2.04
CDR2-204ENST00000564542 BAZ1AQ9NRL2 1556 aaPredicted RBP27.73■■■□□ 2.03
CDR2-204ENST00000564542 BAZ1BQ9UIG0 1483 aaKnown RBP27.64■■■□□ 2.01
CDR2-204ENST00000564542 PEG3Q9GZU2 1588 aa27.63■■■□□ 2.01
CDR2-204ENST00000564542 NESP48681 1621 aa27.59■■■□□ 2.01
CDR2-204ENST00000564542 MROH2BQ7Z745 1585 aa27.47■■□□□ 1.99
CDR2-204ENST00000564542 LAMC3Q9Y6N6 1575 aa27.43■■□□□ 1.98
CDR2-204ENST00000564542 THOC2Q8NI27 1593 aaKnown RBP27.4■■□□□ 1.98
CDR2-204ENST00000564542 KIF21AQ7Z4S6 1674 aa27.27■■□□□ 1.96
CDR2-204ENST00000564542 PDS5BQ9NTI5 1447 aa27.24■■□□□ 1.95
CDR2-204ENST00000564542 WIZO95785 1651 aa27.14■■□□□ 1.94
CDR2-204ENST00000564542 CADPSQ9ULU8 1353 aa27.13■■□□□ 1.93
CDR2-204ENST00000564542 MRC2Q9UBG0 1479 aa27.03■■□□□ 1.92
CDR2-204ENST00000564542 WDR62O43379 1518 aa27■■□□□ 1.91
CDR2-204ENST00000564542 CEP164Q9UPV0 1460 aa26.9■■□□□ 1.9
CDR2-204ENST00000564542 RSF1Q96T23 1441 aaPredicted RBP26.85■■□□□ 1.89
CDR2-204ENST00000564542 FANCD2Q9BXW9 1451 aa26.84■■□□□ 1.89
CDR2-204ENST00000564542 CFTRP13569 1480 aa26.83■■□□□ 1.89
CDR2-204ENST00000564542 TOP2AP11388 1531 aaKnown RBP26.82■■□□□ 1.88
CDR2-204ENST00000564542 URB2Q14146 1524 aaKnown RBP26.63■■□□□ 1.85
CDR2-204ENST00000564542 PRDM2Q13029 1718 aa26.61■■□□□ 1.85
CDR2-204ENST00000564542 TRIM41Q8WV44 630 aa26.55■■□□□ 1.84
CDR2-204ENST00000564542 CCDC88BA6NC98 1476 aa26.47■■□□□ 1.83
CDR2-204ENST00000564542 OSCARQ8IYS5 282 aa26.44■■□□□ 1.82
CDR2-204ENST00000564542 IFT140Q96RY7 1462 aa26.36■■□□□ 1.81
CDR2-204ENST00000564542 TOPBP1Q92547 1522 aa26.33■■□□□ 1.81
CDR2-204ENST00000564542 ZNF608Q9ULD9 1512 aaPredicted RBP26.3■■□□□ 1.8
CDR2-204ENST00000564542 ABCC8Q09428 1581 aa26.28■■□□□ 1.8
CDR2-204ENST00000564542 DNMBPQ6XZF7 1577 aa26.24■■□□□ 1.79
CDR2-204ENST00000564542 EIF4G3O43432 1585 aaKnown RBP26.21■■□□□ 1.79
CDR2-204ENST00000564542 RIMBP3CA6NJZ7 1639 aa26.17■■□□□ 1.78
CDR2-204ENST00000564542 RIMBP3BA6NNM3 1639 aa26.17■■□□□ 1.78
CDR2-204ENST00000564542 RIMBP3Q9UFD9 1639 aa26.17■■□□□ 1.78
CDR2-204ENST00000564542 TARBP1Q13395 1621 aaKnown RBP26.13■■□□□ 1.77
CDR2-204ENST00000564542 ARHGEF11O15085 1522 aa26.09■■□□□ 1.77
CDR2-204ENST00000564542 POLA1P09884 1462 aaPredicted RBP26.05■■□□□ 1.76
CDR2-204ENST00000564542 AQRO60306 1485 aaKnown RBP eCLIP26.04■■□□□ 1.764e-10■■■□□ 17.2
CDR2-204ENST00000564542 CHD1O14646 1710 aa26.02■■□□□ 1.76
CDR2-204ENST00000564542 RAD54L2Q9Y4B4 1467 aa25.92■■□□□ 1.74
CDR2-204ENST00000564542 WDR97A6NE52 1622 aa25.9■■□□□ 1.74
CDR2-204ENST00000564542 SOGA1O94964 1423 aa25.89■■□□□ 1.74
CDR2-204ENST00000564542 FGD5Q6ZNL6 1462 aa25.87■■□□□ 1.73
CDR2-204ENST00000564542 TDRD9Q8NDG6 1382 aaKnown RBP25.84■■□□□ 1.73
CDR2-204ENST00000564542 FBLN2P98095 1184 aa25.84■■□□□ 1.73
CDR2-204ENST00000564542 CUX1P39880 1505 aa25.83■■□□□ 1.73
CDR2-204ENST00000564542 ARAP1Q96P48 1450 aa25.81■■□□□ 1.72
CDR2-204ENST00000564542 CYB5RLQ6IPT4 315 aa25.81■■□□□ 1.72
CDR2-204ENST00000564542 SNAPC4Q5SXM2 1469 aa25.8■■□□□ 1.72
CDR2-204ENST00000564542 MAGI1Q96QZ7 1491 aaPredicted RBP25.75■■□□□ 1.71
CDR2-204ENST00000564542 CLASP1Q7Z460 1538 aa25.73■■□□□ 1.71
CDR2-204ENST00000564542 GRIN2BQ13224 1484 aa25.72■■□□□ 1.71
CDR2-204ENST00000564542 SYNJ1O43426 1573 aa25.7■■□□□ 1.71
CDR2-204ENST00000564542 SYNJ2O15056 1496 aa25.66■■□□□ 1.7
CDR2-204ENST00000564542 PBRM1Q86U86 1689 aa25.65■■□□□ 1.7
CDR2-204ENST00000564542 CHMP7Q8WUX9 453 aaPredicted RBP25.65■■□□□ 1.7
CDR2-204ENST00000564542 GAPVD1Q14C86 1478 aa25.6■■□□□ 1.69
CDR2-204ENST00000564542 ABCA5Q8WWZ7 1642 aa25.59■■□□□ 1.69
CDR2-204ENST00000564542 ABCA10Q8WWZ4 1543 aa25.58■■□□□ 1.69
CDR2-204ENST00000564542 TRHP20396 242 aaPredicted RBP25.56■■□□□ 1.68
CDR2-204ENST00000564542 SUPT5HO00267 1087 aaKnown RBP25.48■■□□□ 1.67
CDR2-204ENST00000564542 WRNQ14191 1432 aaPredicted RBP eCLIP25.43■■□□□ 1.661e-6■■■■■ 58.5
CDR2-204ENST00000564542 BIVM-ERCC5R4GMW8 1640 aa25.42■■□□□ 1.66
CDR2-204ENST00000564542 TOP2BQ02880 1626 aa25.41■■□□□ 1.66
CDR2-204ENST00000564542 GRIN2AQ12879 1464 aa25.4■■□□□ 1.66
CDR2-204ENST00000564542 ADAMTS12P58397 1594 aa25.4■■□□□ 1.66
CDR2-204ENST00000564542 CEP170Q5SW79 1584 aa25.32■■□□□ 1.64
CDR2-204ENST00000564542 NUP160Q12769 1436 aa25.32■■□□□ 1.64
CDR2-204ENST00000564542 ERCC6L2Q5T890 1561 aa25.28■■□□□ 1.64
CDR2-204ENST00000564542 FHAD1B1AJZ9 1412 aa25.28■■□□□ 1.64
CDR2-204ENST00000564542 ERICH3Q5RHP9 1530 aa25.27■■□□□ 1.64
CDR2-204ENST00000564542 SHROOM2Q13796 1616 aa25.26■■□□□ 1.63
CDR2-204ENST00000564542 RUSC2Q8N2Y8 1516 aa25.05■■□□□ 1.6
CDR2-204ENST00000564542 PRG4Q92954 1404 aaPredicted RBP25.04■■□□□ 1.6
CDR2-204ENST00000564542 JPH4Q96JJ6 628 aa24.98■■□□□ 1.59
CDR2-204ENST00000564542 KIF13AQ9H1H9 1805 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms