RNA–Protein interactions for RNA: ENST00000564480.1

KNOP1-202, Transcript of lysine rich nucleolar protein 1, humanhuman

APPRIS ALT2 TSL 2

Gene KNOP1, Length 1,020 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KNOP1-202ENST00000564480 NISCHQ9Y2I1 1504 aa34.96■■■■□ 3.19
KNOP1-202ENST00000564480 ABCC9O60706 1549 aa31.72■■■□□ 2.67
KNOP1-202ENST00000564480 CCDC180Q9P1Z9 1646 aa31.35■■■□□ 2.61
KNOP1-202ENST00000564480 DNAJC5BQ9UF47 199 aa30.09■■■□□ 2.41
KNOP1-202ENST00000564480 RB1CC1Q8TDY2 1594 aa29.98■■■□□ 2.39
KNOP1-202ENST00000564480 NACADO15069 1562 aa29.73■■■□□ 2.35
KNOP1-202ENST00000564480 DCAF8L2P0C7V8 631 aa29.66■■■□□ 2.34
KNOP1-202ENST00000564480 PABPN1Q86U42 306 aaKnown RBP eCLIP29.56■■■□□ 2.32
KNOP1-202ENST00000564480 UNC13AQ9UPW8 1703 aa29.34■■■□□ 2.29
KNOP1-202ENST00000564480 MYO15BQ96JP2 1530 aa29.25■■■□□ 2.27
KNOP1-202ENST00000564480 BICRAQ9NZM4 1560 aa29.23■■■□□ 2.27
KNOP1-202ENST00000564480 ZCCHC6Q5VYS8 1495 aaKnown RBP28.91■■■□□ 2.22
KNOP1-202ENST00000564480 DCAF1Q9Y4B6 1507 aa28.8■■■□□ 2.2
KNOP1-202ENST00000564480 SHROOM4Q9ULL8 1493 aa28.65■■■□□ 2.18
KNOP1-202ENST00000564480 SCRIBQ14160 1630 aa28.65■■■□□ 2.18
KNOP1-202ENST00000564480 CC2D2AQ9P2K1 1620 aa28.6■■■□□ 2.17
KNOP1-202ENST00000564480 CECR2Q9BXF3 1484 aa28.56■■■□□ 2.16
KNOP1-202ENST00000564480 EIF4G1Q04637 1599 aaKnown RBP28.48■■■□□ 2.15
KNOP1-202ENST00000564480 DNAJC5Q9H3Z4 198 aa27.68■■■□□ 2.02
KNOP1-202ENST00000564480 NCAPD3P42695 1498 aa27.52■■■□□ 2
KNOP1-202ENST00000564480 ATAD2BQ9ULI0 1458 aa27.42■■□□□ 1.98
KNOP1-202ENST00000564480 CUX2O14529 1486 aa27.33■■□□□ 1.97
KNOP1-202ENST00000564480 ERCC6Q03468 1493 aa27.32■■□□□ 1.96
KNOP1-202ENST00000564480 SMARCA4P51532 1647 aa27.29■■□□□ 1.96
KNOP1-202ENST00000564480 SMARCA2P51531 1590 aa27.24■■□□□ 1.95
KNOP1-202ENST00000564480 HMGXB3Q12766 1538 aa27.23■■□□□ 1.95
KNOP1-202ENST00000564480 NESP48681 1621 aa27.22■■□□□ 1.95
KNOP1-202ENST00000564480 BAZ1AQ9NRL2 1556 aaPredicted RBP27.09■■□□□ 1.93
KNOP1-202ENST00000564480 BAZ1BQ9UIG0 1483 aaKnown RBP27.09■■□□□ 1.93
KNOP1-202ENST00000564480 PEG3Q9GZU2 1588 aa27.01■■□□□ 1.92
KNOP1-202ENST00000564480 MROH2BQ7Z745 1585 aa26.99■■□□□ 1.91
KNOP1-202ENST00000564480 THOC2Q8NI27 1593 aaKnown RBP26.9■■□□□ 1.9
KNOP1-202ENST00000564480 LAMC3Q9Y6N6 1575 aa26.86■■□□□ 1.89
KNOP1-202ENST00000564480 KIF21AQ7Z4S6 1674 aa26.76■■□□□ 1.87
KNOP1-202ENST00000564480 PDS5BQ9NTI5 1447 aa26.73■■□□□ 1.87
KNOP1-202ENST00000564480 CADPSQ9ULU8 1353 aa26.68■■□□□ 1.86
KNOP1-202ENST00000564480 WIZO95785 1651 aa26.62■■□□□ 1.85
KNOP1-202ENST00000564480 MRC2Q9UBG0 1479 aa26.54■■□□□ 1.84
KNOP1-202ENST00000564480 WDR62O43379 1518 aa26.48■■□□□ 1.83
KNOP1-202ENST00000564480 FANCD2Q9BXW9 1451 aa26.36■■□□□ 1.81
KNOP1-202ENST00000564480 CEP164Q9UPV0 1460 aa26.36■■□□□ 1.81
KNOP1-202ENST00000564480 TRIM41Q8WV44 630 aa26.36■■□□□ 1.81
KNOP1-202ENST00000564480 RSF1Q96T23 1441 aaPredicted RBP26.35■■□□□ 1.81
KNOP1-202ENST00000564480 CFTRP13569 1480 aa26.32■■□□□ 1.8
KNOP1-202ENST00000564480 TOP2AP11388 1531 aaKnown RBP26.22■■□□□ 1.79
KNOP1-202ENST00000564480 URB2Q14146 1524 aaKnown RBP26.19■■□□□ 1.78
KNOP1-202ENST00000564480 OSCARQ8IYS5 282 aa26.11■■□□□ 1.77
KNOP1-202ENST00000564480 CCDC88BA6NC98 1476 aa25.99■■□□□ 1.75
KNOP1-202ENST00000564480 ZNF608Q9ULD9 1512 aaPredicted RBP25.93■■□□□ 1.74
KNOP1-202ENST00000564480 PRDM2Q13029 1718 aa25.89■■□□□ 1.74
KNOP1-202ENST00000564480 IFT140Q96RY7 1462 aa25.85■■□□□ 1.73
KNOP1-202ENST00000564480 TOPBP1Q92547 1522 aa25.84■■□□□ 1.73
KNOP1-202ENST00000564480 RIMBP3CA6NJZ7 1639 aa25.77■■□□□ 1.72
KNOP1-202ENST00000564480 RIMBP3BA6NNM3 1639 aa25.77■■□□□ 1.72
KNOP1-202ENST00000564480 RIMBP3Q9UFD9 1639 aa25.77■■□□□ 1.72
KNOP1-202ENST00000564480 EIF4G3O43432 1585 aaKnown RBP25.69■■□□□ 1.7
KNOP1-202ENST00000564480 ABCC8Q09428 1581 aa25.69■■□□□ 1.7
KNOP1-202ENST00000564480 DNMBPQ6XZF7 1577 aa25.69■■□□□ 1.7
KNOP1-202ENST00000564480 ARHGEF11O15085 1522 aa25.68■■□□□ 1.7
KNOP1-202ENST00000564480 AQRO60306 1485 aaKnown RBP eCLIP25.66■■□□□ 1.77e-7■□□□□ 11.3
KNOP1-202ENST00000564480 TARBP1Q13395 1621 aaKnown RBP25.63■■□□□ 1.69
KNOP1-202ENST00000564480 POLA1P09884 1462 aaPredicted RBP25.57■■□□□ 1.68
KNOP1-202ENST00000564480 CYB5RLQ6IPT4 315 aa25.56■■□□□ 1.68
KNOP1-202ENST00000564480 RAD54L2Q9Y4B4 1467 aa25.53■■□□□ 1.68
KNOP1-202ENST00000564480 CHD1O14646 1710 aa25.52■■□□□ 1.68
KNOP1-202ENST00000564480 FBLN2P98095 1184 aa25.51■■□□□ 1.67
KNOP1-202ENST00000564480 TDRD9Q8NDG6 1382 aaKnown RBP25.48■■□□□ 1.67
KNOP1-202ENST00000564480 SOGA1O94964 1423 aa25.46■■□□□ 1.67
KNOP1-202ENST00000564480 ARAP1Q96P48 1450 aa25.45■■□□□ 1.66
KNOP1-202ENST00000564480 FGD5Q6ZNL6 1462 aa25.38■■□□□ 1.65
KNOP1-202ENST00000564480 SNAPC4Q5SXM2 1469 aa25.34■■□□□ 1.65
KNOP1-202ENST00000564480 CUX1P39880 1505 aa25.34■■□□□ 1.65
KNOP1-202ENST00000564480 TRHP20396 242 aaPredicted RBP25.3■■□□□ 1.64
KNOP1-202ENST00000564480 CLASP1Q7Z460 1538 aa25.27■■□□□ 1.64
KNOP1-202ENST00000564480 CHMP7Q8WUX9 453 aaPredicted RBP25.26■■□□□ 1.63
KNOP1-202ENST00000564480 WDR97A6NE52 1622 aa25.23■■□□□ 1.63
KNOP1-202ENST00000564480 GRIN2BQ13224 1484 aa25.22■■□□□ 1.63
KNOP1-202ENST00000564480 MAGI1Q96QZ7 1491 aaPredicted RBP25.21■■□□□ 1.63
KNOP1-202ENST00000564480 SYNJ2O15056 1496 aa25.16■■□□□ 1.62
KNOP1-202ENST00000564480 SYNJ1O43426 1573 aa25.16■■□□□ 1.62
KNOP1-202ENST00000564480 GAPVD1Q14C86 1478 aa25.12■■□□□ 1.61
KNOP1-202ENST00000564480 PBRM1Q86U86 1689 aa25.06■■□□□ 1.6
KNOP1-202ENST00000564480 ABCA10Q8WWZ4 1543 aa25.06■■□□□ 1.6
KNOP1-202ENST00000564480 SUPT5HO00267 1087 aaKnown RBP25.04■■□□□ 1.6
KNOP1-202ENST00000564480 ABCA5Q8WWZ7 1642 aa25.03■■□□□ 1.6
KNOP1-202ENST00000564480 ERCC6L2Q5T890 1561 aa24.94■■□□□ 1.58
KNOP1-202ENST00000564480 GRIN2AQ12879 1464 aa24.91■■□□□ 1.58
KNOP1-202ENST00000564480 WRNQ14191 1432 aaPredicted RBP eCLIP24.9■■□□□ 1.58
KNOP1-202ENST00000564480 CEP170Q5SW79 1584 aa24.86■■□□□ 1.57
KNOP1-202ENST00000564480 NUP160Q12769 1436 aa24.86■■□□□ 1.57
KNOP1-202ENST00000564480 ADAMTS12P58397 1594 aa24.85■■□□□ 1.57
KNOP1-202ENST00000564480 TOP2BQ02880 1626 aa24.82■■□□□ 1.56
KNOP1-202ENST00000564480 BIVM-ERCC5R4GMW8 1640 aa24.81■■□□□ 1.56
KNOP1-202ENST00000564480 FHAD1B1AJZ9 1412 aa24.78■■□□□ 1.56
KNOP1-202ENST00000564480 SHROOM2Q13796 1616 aa24.74■■□□□ 1.55
KNOP1-202ENST00000564480 ERICH3Q5RHP9 1530 aa24.71■■□□□ 1.55
KNOP1-202ENST00000564480 AEBP2Q6ZN18 517 aaPredicted RBP24.66■■□□□ 1.54
KNOP1-202ENST00000564480 PRG4Q92954 1404 aaPredicted RBP24.64■■□□□ 1.54
KNOP1-202ENST00000564480 JPH4Q96JJ6 628 aa24.63■■□□□ 1.53
KNOP1-202ENST00000564480 KIF13AQ9H1H9 1805 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms