RNA–Protein interactions for RNA: ENST00000564409.1

SPG7-210, Transcript of SPG7, paraplegin matrix AAA peptidase subunit, humanhuman

TSL 3

Gene SPG7, Length 717 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG7-210ENST00000564409 NISCHQ9Y2I1 1504 aa37.29■■■■□ 3.56
SPG7-210ENST00000564409 CCDC180Q9P1Z9 1646 aa33.46■■■□□ 2.95
SPG7-210ENST00000564409 ABCC9O60706 1549 aa33.09■■■□□ 2.89
SPG7-210ENST00000564409 RB1CC1Q8TDY2 1594 aa31.72■■■□□ 2.67
SPG7-210ENST00000564409 NACADO15069 1562 aa31.57■■■□□ 2.64
SPG7-210ENST00000564409 DCAF8L2P0C7V8 631 aa31.29■■■□□ 2.6
SPG7-210ENST00000564409 MYO15BQ96JP2 1530 aa31.25■■■□□ 2.59
SPG7-210ENST00000564409 UNC13AQ9UPW8 1703 aa30.95■■■□□ 2.55
SPG7-210ENST00000564409 ZCCHC6Q5VYS8 1495 aaKnown RBP30.93■■■□□ 2.54
SPG7-210ENST00000564409 DNAJC5BQ9UF47 199 aa30.92■■■□□ 2.54
SPG7-210ENST00000564409 DCAF1Q9Y4B6 1507 aa30.9■■■□□ 2.54
SPG7-210ENST00000564409 PABPN1Q86U42 306 aaKnown RBP eCLIP30.8■■■□□ 2.52
SPG7-210ENST00000564409 BICRAQ9NZM4 1560 aa30.71■■■□□ 2.51
SPG7-210ENST00000564409 SHROOM4Q9ULL8 1493 aa30.48■■■□□ 2.47
SPG7-210ENST00000564409 SCRIBQ14160 1630 aa30.35■■■□□ 2.45
SPG7-210ENST00000564409 CC2D2AQ9P2K1 1620 aa29.96■■■□□ 2.39
SPG7-210ENST00000564409 EIF4G1Q04637 1599 aaKnown RBP29.96■■■□□ 2.39
SPG7-210ENST00000564409 CECR2Q9BXF3 1484 aa29.84■■■□□ 2.37
SPG7-210ENST00000564409 NCAPD3P42695 1498 aa29.11■■■□□ 2.25
SPG7-210ENST00000564409 SMARCA4P51532 1647 aa29.04■■■□□ 2.24
SPG7-210ENST00000564409 SMARCA2P51531 1590 aa29.01■■■□□ 2.24
SPG7-210ENST00000564409 ATAD2BQ9ULI0 1458 aa29.01■■■□□ 2.23
SPG7-210ENST00000564409 BAZ1AQ9NRL2 1556 aaPredicted RBP28.96■■■□□ 2.23
SPG7-210ENST00000564409 HMGXB3Q12766 1538 aa28.93■■■□□ 2.22
SPG7-210ENST00000564409 PEG3Q9GZU2 1588 aa28.81■■■□□ 2.2
SPG7-210ENST00000564409 BAZ1BQ9UIG0 1483 aaKnown RBP28.75■■■□□ 2.19
SPG7-210ENST00000564409 MROH2BQ7Z745 1585 aa28.67■■■□□ 2.18
SPG7-210ENST00000564409 ERCC6Q03468 1493 aa28.62■■■□□ 2.17
SPG7-210ENST00000564409 CUX2O14529 1486 aa28.57■■■□□ 2.16
SPG7-210ENST00000564409 NESP48681 1621 aa28.47■■■□□ 2.15
SPG7-210ENST00000564409 LAMC3Q9Y6N6 1575 aa28.45■■■□□ 2.14
SPG7-210ENST00000564409 DNAJC5Q9H3Z4 198 aa28.43■■■□□ 2.14
SPG7-210ENST00000564409 WIZO95785 1651 aa28.34■■■□□ 2.13
SPG7-210ENST00000564409 PDS5BQ9NTI5 1447 aa28.27■■■□□ 2.12
SPG7-210ENST00000564409 CADPSQ9ULU8 1353 aa28.22■■■□□ 2.11
SPG7-210ENST00000564409 THOC2Q8NI27 1593 aaKnown RBP28.2■■■□□ 2.11
SPG7-210ENST00000564409 RSF1Q96T23 1441 aaPredicted RBP28.18■■■□□ 2.1
SPG7-210ENST00000564409 KIF21AQ7Z4S6 1674 aa28.17■■■□□ 2.1
SPG7-210ENST00000564409 TOP2AP11388 1531 aaKnown RBP28.05■■■□□ 2.08
SPG7-210ENST00000564409 MRC2Q9UBG0 1479 aa27.97■■■□□ 2.07
SPG7-210ENST00000564409 CFTRP13569 1480 aa27.95■■■□□ 2.06
SPG7-210ENST00000564409 CEP164Q9UPV0 1460 aa27.9■■■□□ 2.06
SPG7-210ENST00000564409 WDR62O43379 1518 aa27.9■■■□□ 2.06
SPG7-210ENST00000564409 FANCD2Q9BXW9 1451 aa27.87■■■□□ 2.05
SPG7-210ENST00000564409 PRDM2Q13029 1718 aa27.75■■■□□ 2.03
SPG7-210ENST00000564409 CCDC88BA6NC98 1476 aa27.7■■■□□ 2.02
SPG7-210ENST00000564409 URB2Q14146 1524 aaKnown RBP27.6■■■□□ 2.01
SPG7-210ENST00000564409 ABCC8Q09428 1581 aa27.43■■□□□ 1.98
SPG7-210ENST00000564409 TOPBP1Q92547 1522 aa27.36■■□□□ 1.97
SPG7-210ENST00000564409 IFT140Q96RY7 1462 aa27.36■■□□□ 1.97
SPG7-210ENST00000564409 DNMBPQ6XZF7 1577 aa27.31■■□□□ 1.96
SPG7-210ENST00000564409 OSCARQ8IYS5 282 aa27.28■■□□□ 1.96
SPG7-210ENST00000564409 ZNF608Q9ULD9 1512 aaPredicted RBP27.2■■□□□ 1.94
SPG7-210ENST00000564409 TARBP1Q13395 1621 aaKnown RBP27.12■■□□□ 1.93
SPG7-210ENST00000564409 EIF4G3O43432 1585 aaKnown RBP27.1■■□□□ 1.93
SPG7-210ENST00000564409 POLA1P09884 1462 aaPredicted RBP27.09■■□□□ 1.93
SPG7-210ENST00000564409 TRIM41Q8WV44 630 aa27.02■■□□□ 1.92
SPG7-210ENST00000564409 SUPT5HO00267 1087 aaKnown RBP27.01■■□□□ 1.91
SPG7-210ENST00000564409 AQRO60306 1485 aaKnown RBP eCLIP26.99■■□□□ 1.918e-8■■■■■ 38.2
SPG7-210ENST00000564409 SOGA1O94964 1423 aa26.99■■□□□ 1.91
SPG7-210ENST00000564409 WDR97A6NE52 1622 aa26.98■■□□□ 1.91
SPG7-210ENST00000564409 CUX1P39880 1505 aa26.95■■□□□ 1.9
SPG7-210ENST00000564409 FGD5Q6ZNL6 1462 aa26.93■■□□□ 1.9
SPG7-210ENST00000564409 RAD54L2Q9Y4B4 1467 aa26.93■■□□□ 1.9
SPG7-210ENST00000564409 CHD1O14646 1710 aa26.87■■□□□ 1.89
SPG7-210ENST00000564409 TDRD9Q8NDG6 1382 aaKnown RBP26.85■■□□□ 1.89
SPG7-210ENST00000564409 RIMBP3CA6NJZ7 1639 aa26.84■■□□□ 1.89
SPG7-210ENST00000564409 RIMBP3BA6NNM3 1639 aa26.84■■□□□ 1.89
SPG7-210ENST00000564409 RIMBP3Q9UFD9 1639 aa26.84■■□□□ 1.89
SPG7-210ENST00000564409 ARHGEF11O15085 1522 aa26.79■■□□□ 1.88
SPG7-210ENST00000564409 FBLN2P98095 1184 aa26.77■■□□□ 1.88
SPG7-210ENST00000564409 MAGI1Q96QZ7 1491 aaPredicted RBP26.76■■□□□ 1.87
SPG7-210ENST00000564409 GRIN2BQ13224 1484 aa26.75■■□□□ 1.87
SPG7-210ENST00000564409 SNAPC4Q5SXM2 1469 aa26.74■■□□□ 1.87
SPG7-210ENST00000564409 ABCA10Q8WWZ4 1543 aa26.7■■□□□ 1.86
SPG7-210ENST00000564409 GAPVD1Q14C86 1478 aa26.68■■□□□ 1.86
SPG7-210ENST00000564409 CHMP7Q8WUX9 453 aaPredicted RBP26.67■■□□□ 1.86
SPG7-210ENST00000564409 SYNJ2O15056 1496 aa26.65■■□□□ 1.86
SPG7-210ENST00000564409 PBRM1Q86U86 1689 aa26.65■■□□□ 1.86
SPG7-210ENST00000564409 WRNQ14191 1432 aaPredicted RBP eCLIP26.64■■□□□ 1.85
SPG7-210ENST00000564409 SYNJ1O43426 1573 aa26.63■■□□□ 1.85
SPG7-210ENST00000564409 TOP2BQ02880 1626 aa26.62■■□□□ 1.85
SPG7-210ENST00000564409 BIVM-ERCC5R4GMW8 1640 aa26.62■■□□□ 1.85
SPG7-210ENST00000564409 ABCA5Q8WWZ7 1642 aa26.61■■□□□ 1.85
SPG7-210ENST00000564409 CLASP1Q7Z460 1538 aa26.58■■□□□ 1.85
SPG7-210ENST00000564409 CYB5RLQ6IPT4 315 aa26.55■■□□□ 1.84
SPG7-210ENST00000564409 ARAP1Q96P48 1450 aa26.52■■□□□ 1.84
SPG7-210ENST00000564409 ERICH3Q5RHP9 1530 aa26.39■■□□□ 1.82
SPG7-210ENST00000564409 ADAMTS12P58397 1594 aa26.39■■□□□ 1.82
SPG7-210ENST00000564409 GRIN2AQ12879 1464 aa26.38■■□□□ 1.81
SPG7-210ENST00000564409 FHAD1B1AJZ9 1412 aa26.36■■□□□ 1.81
SPG7-210ENST00000564409 NUP160Q12769 1436 aa26.31■■□□□ 1.8
SPG7-210ENST00000564409 CEP170Q5SW79 1584 aa26.24■■□□□ 1.79
SPG7-210ENST00000564409 TRHP20396 242 aaPredicted RBP26.19■■□□□ 1.78
SPG7-210ENST00000564409 SHROOM2Q13796 1616 aa26.18■■□□□ 1.78
SPG7-210ENST00000564409 KIF27Q86VH2 1401 aa26.11■■□□□ 1.77
SPG7-210ENST00000564409 ERCC6L2Q5T890 1561 aa26.09■■□□□ 1.77
SPG7-210ENST00000564409 CUL7Q14999 1698 aa26.06■■□□□ 1.76
SPG7-210ENST00000564409 IGF1RP08069 1367 aa26.05■■□□□ 1.76
SPG7-210ENST00000564409 JPH4Q96JJ6 628 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms