RNA–Protein interactions for RNA: ENST00000564272.1

SHCBP1-203, Transcript of SHC binding and spindle associated 1, humanhuman

TSL 3

Gene SHCBP1, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1-203ENST00000564272 NISCHQ9Y2I1 1504 aa49.34■■■■■ 5.49
SHCBP1-203ENST00000564272 CCDC180Q9P1Z9 1646 aa44.06■■■■■ 4.64
SHCBP1-203ENST00000564272 ABCC9O60706 1549 aa43.56■■■■■ 4.56
SHCBP1-203ENST00000564272 RB1CC1Q8TDY2 1594 aa41.67■■■■■ 4.26
SHCBP1-203ENST00000564272 NACADO15069 1562 aa41.5■■■■■ 4.23
SHCBP1-203ENST00000564272 DCAF8L2P0C7V8 631 aa41.38■■■■■ 4.21
SHCBP1-203ENST00000564272 MYO15BQ96JP2 1530 aa41.08■■■■■ 4.17
SHCBP1-203ENST00000564272 ZCCHC6Q5VYS8 1495 aaKnown RBP41.04■■■■■ 4.16
SHCBP1-203ENST00000564272 UNC13AQ9UPW8 1703 aa40.78■■■■■ 4.12
SHCBP1-203ENST00000564272 DCAF1Q9Y4B6 1507 aa40.77■■■■■ 4.12
SHCBP1-203ENST00000564272 PABPN1Q86U42 306 aaKnown RBP eCLIP40.62■■■■■ 4.09
SHCBP1-203ENST00000564272 BICRAQ9NZM4 1560 aa40.47■■■■■ 4.07
SHCBP1-203ENST00000564272 DNAJC5BQ9UF47 199 aa40.35■■■■■ 4.05
SHCBP1-203ENST00000564272 SCRIBQ14160 1630 aa40.24■■■■■ 4.03
SHCBP1-203ENST00000564272 SHROOM4Q9ULL8 1493 aa39.93■■■■□ 3.98
SHCBP1-203ENST00000564272 EIF4G1Q04637 1599 aaKnown RBP39.42■■■■□ 3.9
SHCBP1-203ENST00000564272 CC2D2AQ9P2K1 1620 aa39.37■■■■□ 3.89
SHCBP1-203ENST00000564272 CECR2Q9BXF3 1484 aa39.17■■■■□ 3.86
SHCBP1-203ENST00000564272 SMARCA4P51532 1647 aa38.41■■■■□ 3.74
SHCBP1-203ENST00000564272 NCAPD3P42695 1498 aa38.29■■■■□ 3.72
SHCBP1-203ENST00000564272 ATAD2BQ9ULI0 1458 aa38.28■■■■□ 3.72
SHCBP1-203ENST00000564272 BAZ1AQ9NRL2 1556 aaPredicted RBP38.27■■■■□ 3.72
SHCBP1-203ENST00000564272 SMARCA2P51531 1590 aa38.2■■■■□ 3.71
SHCBP1-203ENST00000564272 HMGXB3Q12766 1538 aa38.09■■■■□ 3.69
SHCBP1-203ENST00000564272 MROH2BQ7Z745 1585 aa38.06■■■■□ 3.68
SHCBP1-203ENST00000564272 PEG3Q9GZU2 1588 aa38■■■■□ 3.67
SHCBP1-203ENST00000564272 BAZ1BQ9UIG0 1483 aaKnown RBP37.96■■■■□ 3.67
SHCBP1-203ENST00000564272 WIZO95785 1651 aa37.63■■■■□ 3.62
SHCBP1-203ENST00000564272 NESP48681 1621 aa37.59■■■■□ 3.61
SHCBP1-203ENST00000564272 ERCC6Q03468 1493 aa37.56■■■■□ 3.6
SHCBP1-203ENST00000564272 RSF1Q96T23 1441 aaPredicted RBP37.44■■■■□ 3.58
SHCBP1-203ENST00000564272 LAMC3Q9Y6N6 1575 aa37.36■■■■□ 3.57
SHCBP1-203ENST00000564272 CUX2O14529 1486 aa37.28■■■■□ 3.56
SHCBP1-203ENST00000564272 TOP2AP11388 1531 aaKnown RBP37.19■■■■□ 3.54
SHCBP1-203ENST00000564272 CADPSQ9ULU8 1353 aa37.16■■■■□ 3.54
SHCBP1-203ENST00000564272 KIF21AQ7Z4S6 1674 aa37.14■■■■□ 3.54
SHCBP1-203ENST00000564272 THOC2Q8NI27 1593 aaKnown RBP37.11■■■■□ 3.53
SHCBP1-203ENST00000564272 PDS5BQ9NTI5 1447 aa37.1■■■■□ 3.53
SHCBP1-203ENST00000564272 CFTRP13569 1480 aa36.86■■■■□ 3.49
SHCBP1-203ENST00000564272 MRC2Q9UBG0 1479 aa36.81■■■■□ 3.48
SHCBP1-203ENST00000564272 FANCD2Q9BXW9 1451 aa36.76■■■■□ 3.48
SHCBP1-203ENST00000564272 CEP164Q9UPV0 1460 aa36.76■■■■□ 3.48
SHCBP1-203ENST00000564272 CCDC88BA6NC98 1476 aa36.74■■■■□ 3.47
SHCBP1-203ENST00000564272 WDR62O43379 1518 aa36.7■■■■□ 3.47
SHCBP1-203ENST00000564272 DNAJC5Q9H3Z4 198 aa36.61■■■■□ 3.45
SHCBP1-203ENST00000564272 PRDM2Q13029 1718 aa36.59■■■■□ 3.45
SHCBP1-203ENST00000564272 URB2Q14146 1524 aaKnown RBP36.45■■■■□ 3.43
SHCBP1-203ENST00000564272 SUPT5HO00267 1087 aaKnown RBP36.17■■■■□ 3.38
SHCBP1-203ENST00000564272 TOPBP1Q92547 1522 aa36.14■■■■□ 3.38
SHCBP1-203ENST00000564272 DNMBPQ6XZF7 1577 aa36.06■■■■□ 3.36
SHCBP1-203ENST00000564272 ABCC8Q09428 1581 aa36.03■■■■□ 3.36
SHCBP1-203ENST00000564272 IFT140Q96RY7 1462 aa35.99■■■■□ 3.35
SHCBP1-203ENST00000564272 ZNF608Q9ULD9 1512 aaPredicted RBP35.92■■■■□ 3.34
SHCBP1-203ENST00000564272 POLA1P09884 1462 aaPredicted RBP35.8■■■■□ 3.32
SHCBP1-203ENST00000564272 TARBP1Q13395 1621 aaKnown RBP35.79■■■■□ 3.32
SHCBP1-203ENST00000564272 EIF4G3O43432 1585 aaKnown RBP35.76■■■■□ 3.32
SHCBP1-203ENST00000564272 CUX1P39880 1505 aa35.73■■■■□ 3.31
SHCBP1-203ENST00000564272 FGD5Q6ZNL6 1462 aa35.67■■■■□ 3.3
SHCBP1-203ENST00000564272 RAD54L2Q9Y4B4 1467 aa35.67■■■■□ 3.3
SHCBP1-203ENST00000564272 AQRO60306 1485 aaKnown RBP eCLIP35.63■■■■□ 3.291e-16■■■■□ 20.6
SHCBP1-203ENST00000564272 OSCARQ8IYS5 282 aa35.62■■■■□ 3.29
SHCBP1-203ENST00000564272 SOGA1O94964 1423 aa35.61■■■■□ 3.29
SHCBP1-203ENST00000564272 TDRD9Q8NDG6 1382 aaKnown RBP35.5■■■■□ 3.27
SHCBP1-203ENST00000564272 WDR97A6NE52 1622 aa35.43■■■■□ 3.26
SHCBP1-203ENST00000564272 CHD1O14646 1710 aa35.4■■■■□ 3.26
SHCBP1-203ENST00000564272 SNAPC4Q5SXM2 1469 aa35.32■■■■□ 3.24
SHCBP1-203ENST00000564272 WRNQ14191 1432 aaPredicted RBP eCLIP35.31■■■■□ 3.24
SHCBP1-203ENST00000564272 BIVM-ERCC5R4GMW8 1640 aa35.3■■■■□ 3.24
SHCBP1-203ENST00000564272 SYNJ1O43426 1573 aa35.3■■■■□ 3.24
SHCBP1-203ENST00000564272 TRIM41Q8WV44 630 aa35.29■■■■□ 3.24
SHCBP1-203ENST00000564272 TOP2BQ02880 1626 aa35.28■■■■□ 3.24
SHCBP1-203ENST00000564272 ABCA10Q8WWZ4 1543 aa35.27■■■■□ 3.24
SHCBP1-203ENST00000564272 FBLN2P98095 1184 aa35.26■■■■□ 3.24
SHCBP1-203ENST00000564272 GRIN2BQ13224 1484 aa35.26■■■■□ 3.23
SHCBP1-203ENST00000564272 GAPVD1Q14C86 1478 aa35.22■■■■□ 3.23
SHCBP1-203ENST00000564272 PBRM1Q86U86 1689 aa35.21■■■■□ 3.23
SHCBP1-203ENST00000564272 MAGI1Q96QZ7 1491 aaPredicted RBP35.21■■■■□ 3.23
SHCBP1-203ENST00000564272 ABCA5Q8WWZ7 1642 aa35.21■■■■□ 3.23
SHCBP1-203ENST00000564272 RIMBP3CA6NJZ7 1639 aa35.2■■■■□ 3.23
SHCBP1-203ENST00000564272 RIMBP3BA6NNM3 1639 aa35.2■■■■□ 3.23
SHCBP1-203ENST00000564272 RIMBP3Q9UFD9 1639 aa35.2■■■■□ 3.23
SHCBP1-203ENST00000564272 ARHGEF11O15085 1522 aa35.13■■■■□ 3.21
SHCBP1-203ENST00000564272 SYNJ2O15056 1496 aa35.09■■■■□ 3.21
SHCBP1-203ENST00000564272 CHMP7Q8WUX9 453 aaPredicted RBP35.07■■■■□ 3.2
SHCBP1-203ENST00000564272 CLASP1Q7Z460 1538 aa34.99■■■■□ 3.19
SHCBP1-203ENST00000564272 ADAMTS12P58397 1594 aa34.91■■■■□ 3.18
SHCBP1-203ENST00000564272 ARAP1Q96P48 1450 aa34.84■■■■□ 3.17
SHCBP1-203ENST00000564272 ERICH3Q5RHP9 1530 aa34.83■■■■□ 3.17
SHCBP1-203ENST00000564272 GRIN2AQ12879 1464 aa34.83■■■■□ 3.17
SHCBP1-203ENST00000564272 CYB5RLQ6IPT4 315 aa34.78■■■■□ 3.16
SHCBP1-203ENST00000564272 FHAD1B1AJZ9 1412 aa34.78■■■■□ 3.16
SHCBP1-203ENST00000564272 CEP170Q5SW79 1584 aa34.7■■■■□ 3.15
SHCBP1-203ENST00000564272 NUP160Q12769 1436 aa34.69■■■■□ 3.14
SHCBP1-203ENST00000564272 KIF27Q86VH2 1401 aa34.58■■■■□ 3.13
SHCBP1-203ENST00000564272 ERCC6L2Q5T890 1561 aa34.51■■■■□ 3.12
SHCBP1-203ENST00000564272 IGF1RP08069 1367 aa34.49■■■■□ 3.11
SHCBP1-203ENST00000564272 SHROOM2Q13796 1616 aa34.48■■■■□ 3.11
SHCBP1-203ENST00000564272 CUL7Q14999 1698 aa34.45■■■■□ 3.11
SHCBP1-203ENST00000564272 RUSC2Q8N2Y8 1516 aa34.41■■■■□ 3.1
SHCBP1-203ENST00000564272 PRG4Q92954 1404 aaPredicted RBP34.3■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms