RNA–Protein interactions for RNA: ENST00000563835.1

PTPN9-203, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 5

Gene PTPN9, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-203ENST00000563835 NISCHQ9Y2I1 1504 aa22.95■■□□□ 1.26
PTPN9-203ENST00000563835 CCDC180Q9P1Z9 1646 aa20.56■□□□□ 0.88
PTPN9-203ENST00000563835 ABCC9O60706 1549 aa20.28■□□□□ 0.84
PTPN9-203ENST00000563835 RB1CC1Q8TDY2 1594 aa19.4■□□□□ 0.7
PTPN9-203ENST00000563835 NACADO15069 1562 aa19.3■□□□□ 0.68
PTPN9-203ENST00000563835 DCAF8L2P0C7V8 631 aa19.17■□□□□ 0.66
PTPN9-203ENST00000563835 ZCCHC6Q5VYS8 1495 aaKnown RBP19.11■□□□□ 0.65
PTPN9-203ENST00000563835 UNC13AQ9UPW8 1703 aa19.11■□□□□ 0.65
PTPN9-203ENST00000563835 MYO15BQ96JP2 1530 aa19.08■□□□□ 0.64
PTPN9-203ENST00000563835 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
PTPN9-203ENST00000563835 BICRAQ9NZM4 1560 aa18.88■□□□□ 0.61
PTPN9-203ENST00000563835 PABPN1Q86U42 306 aaKnown RBP eCLIP18.86■□□□□ 0.61
PTPN9-203ENST00000563835 SCRIBQ14160 1630 aa18.78■□□□□ 0.6
PTPN9-203ENST00000563835 DNAJC5BQ9UF47 199 aa18.75■□□□□ 0.59
PTPN9-203ENST00000563835 SHROOM4Q9ULL8 1493 aa18.55■□□□□ 0.56
PTPN9-203ENST00000563835 EIF4G1Q04637 1599 aaKnown RBP18.37■□□□□ 0.53
PTPN9-203ENST00000563835 CC2D2AQ9P2K1 1620 aa18.36■□□□□ 0.53
PTPN9-203ENST00000563835 CECR2Q9BXF3 1484 aa18.21■□□□□ 0.51
PTPN9-203ENST00000563835 SMARCA4P51532 1647 aa17.9■□□□□ 0.46
PTPN9-203ENST00000563835 BAZ1AQ9NRL2 1556 aaPredicted RBP17.8■□□□□ 0.44
PTPN9-203ENST00000563835 ATAD2BQ9ULI0 1458 aa17.8■□□□□ 0.44
PTPN9-203ENST00000563835 NCAPD3P42695 1498 aa17.78■□□□□ 0.44
PTPN9-203ENST00000563835 SMARCA2P51531 1590 aa17.76■□□□□ 0.43
PTPN9-203ENST00000563835 HMGXB3Q12766 1538 aa17.74■□□□□ 0.43
PTPN9-203ENST00000563835 MROH2BQ7Z745 1585 aa17.73■□□□□ 0.43
PTPN9-203ENST00000563835 PEG3Q9GZU2 1588 aa17.7■□□□□ 0.42
PTPN9-203ENST00000563835 BAZ1BQ9UIG0 1483 aaKnown RBP17.65■□□□□ 0.42
PTPN9-203ENST00000563835 WIZO95785 1651 aa17.57■□□□□ 0.4
PTPN9-203ENST00000563835 NESP48681 1621 aa17.52■□□□□ 0.4
PTPN9-203ENST00000563835 ERCC6Q03468 1493 aa17.45■□□□□ 0.38
PTPN9-203ENST00000563835 LAMC3Q9Y6N6 1575 aa17.4■□□□□ 0.38
PTPN9-203ENST00000563835 RSF1Q96T23 1441 aaPredicted RBP17.39■□□□□ 0.38
PTPN9-203ENST00000563835 KIF21AQ7Z4S6 1674 aa17.36■□□□□ 0.37
PTPN9-203ENST00000563835 THOC2Q8NI27 1593 aaKnown RBP17.34■□□□□ 0.37
PTPN9-203ENST00000563835 TOP2AP11388 1531 aaKnown RBP17.32■□□□□ 0.36
PTPN9-203ENST00000563835 CUX2O14529 1486 aa17.32■□□□□ 0.36
PTPN9-203ENST00000563835 CADPSQ9ULU8 1353 aa17.24■□□□□ 0.35
PTPN9-203ENST00000563835 PDS5BQ9NTI5 1447 aa17.21■□□□□ 0.34
PTPN9-203ENST00000563835 PRDM2Q13029 1718 aa17.13■□□□□ 0.33
PTPN9-203ENST00000563835 CFTRP13569 1480 aa17.12■□□□□ 0.33
PTPN9-203ENST00000563835 MRC2Q9UBG0 1479 aa17.12■□□□□ 0.33
PTPN9-203ENST00000563835 FANCD2Q9BXW9 1451 aa17.1■□□□□ 0.33
PTPN9-203ENST00000563835 CEP164Q9UPV0 1460 aa17.1■□□□□ 0.33
PTPN9-203ENST00000563835 WDR62O43379 1518 aa17.1■□□□□ 0.33
PTPN9-203ENST00000563835 CCDC88BA6NC98 1476 aa17.08■□□□□ 0.32
PTPN9-203ENST00000563835 URB2Q14146 1524 aaKnown RBP16.98■□□□□ 0.31
PTPN9-203ENST00000563835 DNAJC5Q9H3Z4 198 aa16.96■□□□□ 0.31
PTPN9-203ENST00000563835 TOPBP1Q92547 1522 aa16.82■□□□□ 0.28
PTPN9-203ENST00000563835 DNMBPQ6XZF7 1577 aa16.8■□□□□ 0.28
PTPN9-203ENST00000563835 SUPT5HO00267 1087 aaKnown RBP16.77■□□□□ 0.28
PTPN9-203ENST00000563835 ZNF608Q9ULD9 1512 aaPredicted RBP16.73■□□□□ 0.27
PTPN9-203ENST00000563835 IFT140Q96RY7 1462 aa16.72■□□□□ 0.27
PTPN9-203ENST00000563835 ABCC8Q09428 1581 aa16.71■□□□□ 0.27
PTPN9-203ENST00000563835 EIF4G3O43432 1585 aaKnown RBP16.7■□□□□ 0.26
PTPN9-203ENST00000563835 TARBP1Q13395 1621 aaKnown RBP16.69■□□□□ 0.26
PTPN9-203ENST00000563835 POLA1P09884 1462 aaPredicted RBP16.67■□□□□ 0.26
PTPN9-203ENST00000563835 CUX1P39880 1505 aa16.65■□□□□ 0.26
PTPN9-203ENST00000563835 FGD5Q6ZNL6 1462 aa16.61■□□□□ 0.25
PTPN9-203ENST00000563835 RAD54L2Q9Y4B4 1467 aa16.61■□□□□ 0.25
PTPN9-203ENST00000563835 WDR97A6NE52 1622 aa16.57■□□□□ 0.24
PTPN9-203ENST00000563835 AQRO60306 1485 aaKnown RBP eCLIP16.57■□□□□ 0.24
PTPN9-203ENST00000563835 CHD1O14646 1710 aa16.56■□□□□ 0.24
PTPN9-203ENST00000563835 SOGA1O94964 1423 aa16.53■□□□□ 0.24
PTPN9-203ENST00000563835 TDRD9Q8NDG6 1382 aaKnown RBP16.49■□□□□ 0.23
PTPN9-203ENST00000563835 OSCARQ8IYS5 282 aa16.48■□□□□ 0.23
PTPN9-203ENST00000563835 SYNJ1O43426 1573 aa16.47■□□□□ 0.23
PTPN9-203ENST00000563835 PBRM1Q86U86 1689 aa16.47■□□□□ 0.23
PTPN9-203ENST00000563835 BIVM-ERCC5R4GMW8 1640 aa16.47■□□□□ 0.23
PTPN9-203ENST00000563835 SNAPC4Q5SXM2 1469 aa16.45■□□□□ 0.22
PTPN9-203ENST00000563835 TOP2BQ02880 1626 aa16.44■□□□□ 0.22
PTPN9-203ENST00000563835 ABCA5Q8WWZ7 1642 aa16.43■□□□□ 0.22
PTPN9-203ENST00000563835 RIMBP3CA6NJZ7 1639 aa16.42■□□□□ 0.22
PTPN9-203ENST00000563835 RIMBP3BA6NNM3 1639 aa16.42■□□□□ 0.22
PTPN9-203ENST00000563835 RIMBP3Q9UFD9 1639 aa16.42■□□□□ 0.22
PTPN9-203ENST00000563835 WRNQ14191 1432 aaPredicted RBP eCLIP16.4■□□□□ 0.22
PTPN9-203ENST00000563835 ABCA10Q8WWZ4 1543 aa16.4■□□□□ 0.22
PTPN9-203ENST00000563835 GRIN2BQ13224 1484 aa16.38■□□□□ 0.21
PTPN9-203ENST00000563835 TRIM41Q8WV44 630 aa16.38■□□□□ 0.21
PTPN9-203ENST00000563835 GAPVD1Q14C86 1478 aa16.36■□□□□ 0.21
PTPN9-203ENST00000563835 MAGI1Q96QZ7 1491 aaPredicted RBP16.36■□□□□ 0.21
PTPN9-203ENST00000563835 ARHGEF11O15085 1522 aa16.36■□□□□ 0.21
PTPN9-203ENST00000563835 FBLN2P98095 1184 aa16.35■□□□□ 0.21
PTPN9-203ENST00000563835 CLASP1Q7Z460 1538 aa16.31■□□□□ 0.2
PTPN9-203ENST00000563835 SYNJ2O15056 1496 aa16.31■□□□□ 0.2
PTPN9-203ENST00000563835 ADAMTS12P58397 1594 aa16.3■□□□□ 0.2
PTPN9-203ENST00000563835 CHMP7Q8WUX9 453 aaPredicted RBP16.23■□□□□ 0.19
PTPN9-203ENST00000563835 ARAP1Q96P48 1450 aa16.22■□□□□ 0.19
PTPN9-203ENST00000563835 ERICH3Q5RHP9 1530 aa16.2■□□□□ 0.18
PTPN9-203ENST00000563835 GRIN2AQ12879 1464 aa16.2■□□□□ 0.18
PTPN9-203ENST00000563835 CEP170Q5SW79 1584 aa16.19■□□□□ 0.18
PTPN9-203ENST00000563835 FHAD1B1AJZ9 1412 aa16.14■□□□□ 0.17
PTPN9-203ENST00000563835 NUP160Q12769 1436 aa16.12■□□□□ 0.17
PTPN9-203ENST00000563835 CYB5RLQ6IPT4 315 aa16.12■□□□□ 0.17
PTPN9-203ENST00000563835 ERCC6L2Q5T890 1561 aa16.12■□□□□ 0.17
PTPN9-203ENST00000563835 SHROOM2Q13796 1616 aa16.08■□□□□ 0.17
PTPN9-203ENST00000563835 RUSC2Q8N2Y8 1516 aa16.07■□□□□ 0.16
PTPN9-203ENST00000563835 CUL7Q14999 1698 aa16.06■□□□□ 0.16
PTPN9-203ENST00000563835 KIF27Q86VH2 1401 aa16.04■□□□□ 0.16
PTPN9-203ENST00000563835 IGF1RP08069 1367 aa16■□□□□ 0.15
PTPN9-203ENST00000563835 PRG4Q92954 1404 aaPredicted RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms