RNA–Protein interactions for RNA: ENST00000563790.5

HDGFL3-204, Transcript of HDGF like 3, humanhuman

TSL 3

Gene HDGFL3, Length 934 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-204ENST00000563790 NISCHQ9Y2I1 1504 aa29.24■■■□□ 2.27
HDGFL3-204ENST00000563790 ABCC9O60706 1549 aa28.84■■■□□ 2.21
HDGFL3-204ENST00000563790 DNAJC5BQ9UF47 199 aa28.73■■■□□ 2.19
HDGFL3-204ENST00000563790 DNAJC5Q9H3Z4 198 aa27.81■■■□□ 2.04
HDGFL3-204ENST00000563790 CCDC180Q9P1Z9 1646 aa27.24■■□□□ 1.95
HDGFL3-204ENST00000563790 RB1CC1Q8TDY2 1594 aa26.73■■□□□ 1.87
HDGFL3-204ENST00000563790 PABPN1Q86U42 306 aaKnown RBP eCLIP26.44■■□□□ 1.82
HDGFL3-204ENST00000563790 UNC13AQ9UPW8 1703 aa26.36■■□□□ 1.81
HDGFL3-204ENST00000563790 CECR2Q9BXF3 1484 aa26.2■■□□□ 1.78
HDGFL3-204ENST00000563790 NACADO15069 1562 aa26.09■■□□□ 1.77
HDGFL3-204ENST00000563790 BICRAQ9NZM4 1560 aa26.07■■□□□ 1.76
HDGFL3-204ENST00000563790 CC2D2AQ9P2K1 1620 aa26.07■■□□□ 1.76
HDGFL3-204ENST00000563790 CUX2O14529 1486 aa25.73■■□□□ 1.71
HDGFL3-204ENST00000563790 TRIM41Q8WV44 630 aa25.67■■□□□ 1.7
HDGFL3-204ENST00000563790 EIF4G1Q04637 1599 aaKnown RBP25.54■■□□□ 1.68
HDGFL3-204ENST00000563790 SHROOM4Q9ULL8 1493 aa25.52■■□□□ 1.68
HDGFL3-204ENST00000563790 DCAF8L2P0C7V8 631 aa25.23■■□□□ 1.63
HDGFL3-204ENST00000563790 MYO15BQ96JP2 1530 aa25.13■■□□□ 1.61
HDGFL3-204ENST00000563790 ERCC6Q03468 1493 aa25.02■■□□□ 1.6
HDGFL3-204ENST00000563790 AEBP2Q6ZN18 517 aaPredicted RBP24.68■■□□□ 1.54
HDGFL3-204ENST00000563790 SCRIBQ14160 1630 aa24.56■■□□□ 1.52
HDGFL3-204ENST00000563790 THOC2Q8NI27 1593 aaKnown RBP24.53■■□□□ 1.52
HDGFL3-204ENST00000563790 NESP48681 1621 aa24.26■■□□□ 1.47
HDGFL3-204ENST00000563790 BAZ1AQ9NRL2 1556 aaPredicted RBP24.25■■□□□ 1.47
HDGFL3-204ENST00000563790 RIMBP3CA6NJZ7 1639 aa24.18■■□□□ 1.46
HDGFL3-204ENST00000563790 RIMBP3BA6NNM3 1639 aa24.18■■□□□ 1.46
HDGFL3-204ENST00000563790 RIMBP3Q9UFD9 1639 aa24.18■■□□□ 1.46
HDGFL3-204ENST00000563790 OSCARQ8IYS5 282 aa24.11■■□□□ 1.45
HDGFL3-204ENST00000563790 DCAF1Q9Y4B6 1507 aa24.1■■□□□ 1.45
HDGFL3-204ENST00000563790 ILDR1Q86SU0 546 aaPredicted RBP24.08■■□□□ 1.45
HDGFL3-204ENST00000563790 SMARCA2P51531 1590 aa24.08■■□□□ 1.44
HDGFL3-204ENST00000563790 NCAPD3P42695 1498 aa24.07■■□□□ 1.44
HDGFL3-204ENST00000563790 KIF21AQ7Z4S6 1674 aa24.06■■□□□ 1.44
HDGFL3-204ENST00000563790 TRHP20396 242 aaPredicted RBP23.95■■□□□ 1.42
HDGFL3-204ENST00000563790 LAMC3Q9Y6N6 1575 aa23.89■■□□□ 1.41
HDGFL3-204ENST00000563790 ARHGEF11O15085 1522 aa23.84■■□□□ 1.41
HDGFL3-204ENST00000563790 ZCCHC6Q5VYS8 1495 aaKnown RBP23.83■■□□□ 1.41
HDGFL3-204ENST00000563790 HMGXB3Q12766 1538 aa23.77■■□□□ 1.4
HDGFL3-204ENST00000563790 WDR62O43379 1518 aa23.71■■□□□ 1.39
HDGFL3-204ENST00000563790 PDS5BQ9NTI5 1447 aa23.7■■□□□ 1.38
HDGFL3-204ENST00000563790 ATAD2BQ9ULI0 1458 aa23.69■■□□□ 1.38
HDGFL3-204ENST00000563790 MRC2Q9UBG0 1479 aa23.64■■□□□ 1.38
HDGFL3-204ENST00000563790 CYB5RLQ6IPT4 315 aa23.64■■□□□ 1.37
HDGFL3-204ENST00000563790 ARAP1Q96P48 1450 aa23.46■■□□□ 1.35
HDGFL3-204ENST00000563790 BAZ1BQ9UIG0 1483 aaKnown RBP23.35■■□□□ 1.33
HDGFL3-204ENST00000563790 SMARCA4P51532 1647 aa23.28■■□□□ 1.32
HDGFL3-204ENST00000563790 CADPSQ9ULU8 1353 aa23.17■■□□□ 1.3
HDGFL3-204ENST00000563790 CEP164Q9UPV0 1460 aa23.16■■□□□ 1.3
HDGFL3-204ENST00000563790 PEG3Q9GZU2 1588 aa23.1■■□□□ 1.29
HDGFL3-204ENST00000563790 RSF1Q96T23 1441 aaPredicted RBP23.1■■□□□ 1.29
HDGFL3-204ENST00000563790 CHD1O14646 1710 aa23.06■■□□□ 1.28
HDGFL3-204ENST00000563790 FANCD2Q9BXW9 1451 aa22.94■■□□□ 1.26
HDGFL3-204ENST00000563790 URB2Q14146 1524 aaKnown RBP22.9■■□□□ 1.26
HDGFL3-204ENST00000563790 ZNF608Q9ULD9 1512 aaPredicted RBP22.9■■□□□ 1.26
HDGFL3-204ENST00000563790 KDM4FA0A1W2PPD8 638 aa22.86■■□□□ 1.25
HDGFL3-204ENST00000563790 ERCC6L2Q5T890 1561 aa22.85■■□□□ 1.25
HDGFL3-204ENST00000563790 LMTK3Q96Q04 1460 aa22.79■■□□□ 1.24
HDGFL3-204ENST00000563790 EIF4G3O43432 1585 aaKnown RBP22.78■■□□□ 1.24
HDGFL3-204ENST00000563790 FBXO41Q8TF61 875 aa22.77■■□□□ 1.24
HDGFL3-204ENST00000563790 IFT140Q96RY7 1462 aa22.76■■□□□ 1.23
HDGFL3-204ENST00000563790 KIF13AQ9H1H9 1805 aa22.73■■□□□ 1.23
HDGFL3-204ENST00000563790 SOCS7O14512 581 aa22.68■■□□□ 1.22
HDGFL3-204ENST00000563790 CLASP1Q7Z460 1538 aa22.66■■□□□ 1.22
HDGFL3-204ENST00000563790 HECW2Q9P2P5 1572 aa22.64■■□□□ 1.22
HDGFL3-204ENST00000563790 CFTRP13569 1480 aa22.56■■□□□ 1.2
HDGFL3-204ENST00000563790 FBLN2P98095 1184 aa22.53■■□□□ 1.2
HDGFL3-204ENST00000563790 GAPVD1Q14C86 1478 aa22.49■■□□□ 1.19
HDGFL3-204ENST00000563790 MROH2BQ7Z745 1585 aa22.48■■□□□ 1.19
HDGFL3-204ENST00000563790 PRDM2Q13029 1718 aa22.47■■□□□ 1.19
HDGFL3-204ENST00000563790 ILDR2Q71H61 639 aa22.45■■□□□ 1.18
HDGFL3-204ENST00000563790 SYNJ1O43426 1573 aa22.44■■□□□ 1.18
HDGFL3-204ENST00000563790 AQRO60306 1485 aaKnown RBP eCLIP22.41■■□□□ 1.18
HDGFL3-204ENST00000563790 TARBP1Q13395 1621 aaKnown RBP22.37■■□□□ 1.17
HDGFL3-204ENST00000563790 KDM6BO15054 1643 aa22.35■■□□□ 1.17
HDGFL3-204ENST00000563790 TOPBP1Q92547 1522 aa22.32■■□□□ 1.16
HDGFL3-204ENST00000563790 SYNJ2O15056 1496 aa22.28■■□□□ 1.16
HDGFL3-204ENST00000563790 ADGRL1O94910 1474 aa22.28■■□□□ 1.16
HDGFL3-204ENST00000563790 DISP3Q9P2K9 1392 aa22.19■■□□□ 1.14
HDGFL3-204ENST00000563790 WIZO95785 1651 aa22.18■■□□□ 1.14
HDGFL3-204ENST00000563790 ABCC8Q09428 1581 aa22.16■■□□□ 1.14
HDGFL3-204ENST00000563790 SNAPC4Q5SXM2 1469 aa22.15■■□□□ 1.14
HDGFL3-204ENST00000563790 DNMBPQ6XZF7 1577 aa22.12■■□□□ 1.13
HDGFL3-204ENST00000563790 TSPOAP1O95153 1857 aa22.11■■□□□ 1.13
HDGFL3-204ENST00000563790 ABCC10Q5T3U5 1492 aa22.11■■□□□ 1.13
HDGFL3-204ENST00000563790 CHMP7Q8WUX9 453 aaPredicted RBP22.1■■□□□ 1.13
HDGFL3-204ENST00000563790 CHIC1Q5VXU3 224 aa22.08■■□□□ 1.13
HDGFL3-204ENST00000563790 MAGI1Q96QZ7 1491 aaPredicted RBP22.08■■□□□ 1.12
HDGFL3-204ENST00000563790 DIP2BQ9P265 1576 aa22.07■■□□□ 1.12
HDGFL3-204ENST00000563790 FAM69CQ0P6D2 419 aa22.05■■□□□ 1.12
HDGFL3-204ENST00000563790 WDR97A6NE52 1622 aa22.03■■□□□ 1.12
HDGFL3-204ENST00000563790 POLA1P09884 1462 aaPredicted RBP21.96■■□□□ 1.11
HDGFL3-204ENST00000563790 SPATA31D1Q6ZQQ2 1576 aa21.95■■□□□ 1.1
HDGFL3-204ENST00000563790 TDRD9Q8NDG6 1382 aaKnown RBP21.94■■□□□ 1.1
HDGFL3-204ENST00000563790 MAPKBP1O60336 1514 aa21.93■■□□□ 1.1
HDGFL3-204ENST00000563790 CEP170Q5SW79 1584 aa21.91■■□□□ 1.1
HDGFL3-204ENST00000563790 RAD54L2Q9Y4B4 1467 aa21.86■■□□□ 1.09
HDGFL3-204ENST00000563790 GRIN2BQ13224 1484 aa21.83■■□□□ 1.09
HDGFL3-204ENST00000563790 SHROOM2Q13796 1616 aa21.83■■□□□ 1.08
HDGFL3-204ENST00000563790 PBRM1Q86U86 1689 aa21.8■■□□□ 1.08
HDGFL3-204ENST00000563790 TOP2BQ02880 1626 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms