RNA–Protein interactions for RNA: ENST00000563643.1

E4F1-203, Transcript of E4F transcription factor 1, humanhuman

TSL 3

Gene E4F1, Length 793 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
E4F1-203ENST00000563643 NISCHQ9Y2I1 1504 aa46.73■■■■■ 5.07
E4F1-203ENST00000563643 ABCC9O60706 1549 aa43.55■■■■■ 4.56
E4F1-203ENST00000563643 CCDC180Q9P1Z9 1646 aa42.39■■■■■ 4.38
E4F1-203ENST00000563643 DNAJC5BQ9UF47 199 aa41.86■■■■■ 4.29
E4F1-203ENST00000563643 RB1CC1Q8TDY2 1594 aa40.93■■■■■ 4.14
E4F1-203ENST00000563643 NACADO15069 1562 aa40.37■■■■■ 4.05
E4F1-203ENST00000563643 PABPN1Q86U42 306 aaKnown RBP eCLIP40.36■■■■■ 4.05
E4F1-203ENST00000563643 UNC13AQ9UPW8 1703 aa39.94■■■■□ 3.98
E4F1-203ENST00000563643 DCAF8L2P0C7V8 631 aa39.91■■■■□ 3.98
E4F1-203ENST00000563643 BICRAQ9NZM4 1560 aa39.8■■■■□ 3.96
E4F1-203ENST00000563643 MYO15BQ96JP2 1530 aa39.45■■■■□ 3.91
E4F1-203ENST00000563643 CECR2Q9BXF3 1484 aa39.36■■■■□ 3.89
E4F1-203ENST00000563643 DNAJC5Q9H3Z4 198 aa39.27■■■■□ 3.88
E4F1-203ENST00000563643 CC2D2AQ9P2K1 1620 aa39.25■■■■□ 3.87
E4F1-203ENST00000563643 SHROOM4Q9ULL8 1493 aa39.16■■■■□ 3.86
E4F1-203ENST00000563643 EIF4G1Q04637 1599 aaKnown RBP38.91■■■■□ 3.82
E4F1-203ENST00000563643 SCRIBQ14160 1630 aa38.59■■■■□ 3.77
E4F1-203ENST00000563643 DCAF1Q9Y4B6 1507 aa38.53■■■■□ 3.76
E4F1-203ENST00000563643 ZCCHC6Q5VYS8 1495 aaKnown RBP38.5■■■■□ 3.75
E4F1-203ENST00000563643 CUX2O14529 1486 aa38.01■■■■□ 3.67
E4F1-203ENST00000563643 ERCC6Q03468 1493 aa37.69■■■■□ 3.62
E4F1-203ENST00000563643 NCAPD3P42695 1498 aa37.31■■■■□ 3.56
E4F1-203ENST00000563643 NESP48681 1621 aa37.09■■■■□ 3.53
E4F1-203ENST00000563643 TRIM41Q8WV44 630 aa37.08■■■■□ 3.53
E4F1-203ENST00000563643 ATAD2BQ9ULI0 1458 aa37.02■■■■□ 3.52
E4F1-203ENST00000563643 THOC2Q8NI27 1593 aaKnown RBP36.94■■■■□ 3.5
E4F1-203ENST00000563643 HMGXB3Q12766 1538 aa36.92■■■■□ 3.5
E4F1-203ENST00000563643 SMARCA2P51531 1590 aa36.85■■■■□ 3.49
E4F1-203ENST00000563643 SMARCA4P51532 1647 aa36.69■■■■□ 3.46
E4F1-203ENST00000563643 LAMC3Q9Y6N6 1575 aa36.63■■■■□ 3.45
E4F1-203ENST00000563643 BAZ1BQ9UIG0 1483 aaKnown RBP36.61■■■■□ 3.45
E4F1-203ENST00000563643 KIF21AQ7Z4S6 1674 aa36.52■■■■□ 3.44
E4F1-203ENST00000563643 PDS5BQ9NTI5 1447 aa36.47■■■■□ 3.43
E4F1-203ENST00000563643 PEG3Q9GZU2 1588 aa36.35■■■■□ 3.41
E4F1-203ENST00000563643 BAZ1AQ9NRL2 1556 aaPredicted RBP36.35■■■■□ 3.41
E4F1-203ENST00000563643 MRC2Q9UBG0 1479 aa36.24■■■■□ 3.39
E4F1-203ENST00000563643 WDR62O43379 1518 aa36.18■■■■□ 3.38
E4F1-203ENST00000563643 CADPSQ9ULU8 1353 aa36.11■■■■□ 3.37
E4F1-203ENST00000563643 OSCARQ8IYS5 282 aa36.05■■■■□ 3.36
E4F1-203ENST00000563643 MROH2BQ7Z745 1585 aa36■■■■□ 3.35
E4F1-203ENST00000563643 CEP164Q9UPV0 1460 aa35.86■■■■□ 3.33
E4F1-203ENST00000563643 FANCD2Q9BXW9 1451 aa35.72■■■■□ 3.31
E4F1-203ENST00000563643 RIMBP3CA6NJZ7 1639 aa35.72■■■■□ 3.31
E4F1-203ENST00000563643 RIMBP3BA6NNM3 1639 aa35.72■■■■□ 3.31
E4F1-203ENST00000563643 RIMBP3Q9UFD9 1639 aa35.72■■■■□ 3.31
E4F1-203ENST00000563643 ARHGEF11O15085 1522 aa35.52■■■■□ 3.28
E4F1-203ENST00000563643 URB2Q14146 1524 aaKnown RBP35.5■■■■□ 3.27
E4F1-203ENST00000563643 WIZO95785 1651 aa35.48■■■■□ 3.27
E4F1-203ENST00000563643 CFTRP13569 1480 aa35.47■■■■□ 3.27
E4F1-203ENST00000563643 CYB5RLQ6IPT4 315 aa35.3■■■■□ 3.24
E4F1-203ENST00000563643 TRHP20396 242 aaPredicted RBP35.28■■■■□ 3.24
E4F1-203ENST00000563643 ZNF608Q9ULD9 1512 aaPredicted RBP35.25■■■■□ 3.23
E4F1-203ENST00000563643 IFT140Q96RY7 1462 aa35.18■■■■□ 3.22
E4F1-203ENST00000563643 ARAP1Q96P48 1450 aa35.09■■■■□ 3.21
E4F1-203ENST00000563643 AEBP2Q6ZN18 517 aaPredicted RBP35.08■■■■□ 3.21
E4F1-203ENST00000563643 EIF4G3O43432 1585 aaKnown RBP34.99■■■■□ 3.19
E4F1-203ENST00000563643 TOP2AP11388 1531 aaKnown RBP34.98■■■■□ 3.19
E4F1-203ENST00000563643 PRDM2Q13029 1718 aa34.92■■■■□ 3.18
E4F1-203ENST00000563643 RSF1Q96T23 1441 aaPredicted RBP34.91■■■■□ 3.18
E4F1-203ENST00000563643 TOPBP1Q92547 1522 aa34.91■■■■□ 3.18
E4F1-203ENST00000563643 CHD1O14646 1710 aa34.89■■■■□ 3.18
E4F1-203ENST00000563643 AQRO60306 1485 aaKnown RBP eCLIP34.78■■■■□ 3.163e-7■■■■■ 73.8
E4F1-203ENST00000563643 FBLN2P98095 1184 aa34.76■■■■□ 3.16
E4F1-203ENST00000563643 ABCC8Q09428 1581 aa34.72■■■■□ 3.15
E4F1-203ENST00000563643 TARBP1Q13395 1621 aaKnown RBP34.67■■■■□ 3.14
E4F1-203ENST00000563643 DNMBPQ6XZF7 1577 aa34.66■■■■□ 3.14
E4F1-203ENST00000563643 CCDC88BA6NC98 1476 aa34.59■■■■□ 3.13
E4F1-203ENST00000563643 CLASP1Q7Z460 1538 aa34.52■■■■□ 3.12
E4F1-203ENST00000563643 POLA1P09884 1462 aaPredicted RBP34.49■■■■□ 3.11
E4F1-203ENST00000563643 SNAPC4Q5SXM2 1469 aa34.39■■■■□ 3.1
E4F1-203ENST00000563643 TDRD9Q8NDG6 1382 aaKnown RBP34.38■■■■□ 3.09
E4F1-203ENST00000563643 SYNJ1O43426 1573 aa34.38■■■■□ 3.09
E4F1-203ENST00000563643 RAD54L2Q9Y4B4 1467 aa34.38■■■■□ 3.09
E4F1-203ENST00000563643 CHMP7Q8WUX9 453 aaPredicted RBP34.32■■■■□ 3.08
E4F1-203ENST00000563643 SOGA1O94964 1423 aa34.29■■■■□ 3.08
E4F1-203ENST00000563643 GAPVD1Q14C86 1478 aa34.25■■■■□ 3.07
E4F1-203ENST00000563643 MAGI1Q96QZ7 1491 aaPredicted RBP34.25■■■■□ 3.07
E4F1-203ENST00000563643 WDR97A6NE52 1622 aa34.23■■■■□ 3.07
E4F1-203ENST00000563643 SYNJ2O15056 1496 aa34.16■■■■□ 3.06
E4F1-203ENST00000563643 GRIN2BQ13224 1484 aa34.14■■■■□ 3.06
E4F1-203ENST00000563643 FGD5Q6ZNL6 1462 aa34.1■■■■□ 3.05
E4F1-203ENST00000563643 ERCC6L2Q5T890 1561 aa33.9■■■■□ 3.02
E4F1-203ENST00000563643 CUX1P39880 1505 aa33.89■■■■□ 3.02
E4F1-203ENST00000563643 PBRM1Q86U86 1689 aa33.87■■■■□ 3.01
E4F1-203ENST00000563643 KIF13AQ9H1H9 1805 aa33.74■■■□□ 2.99
E4F1-203ENST00000563643 CEP170Q5SW79 1584 aa33.73■■■□□ 2.99
E4F1-203ENST00000563643 ILDR1Q86SU0 546 aaPredicted RBP33.72■■■□□ 2.99
E4F1-203ENST00000563643 GRIN2AQ12879 1464 aa33.7■■■□□ 2.99
E4F1-203ENST00000563643 ABCA5Q8WWZ7 1642 aa33.69■■■□□ 2.98
E4F1-203ENST00000563643 ABCA10Q8WWZ4 1543 aa33.64■■■□□ 2.98
E4F1-203ENST00000563643 NUP160Q12769 1436 aa33.63■■■□□ 2.97
E4F1-203ENST00000563643 SHROOM2Q13796 1616 aa33.6■■■□□ 2.97
E4F1-203ENST00000563643 KDM4FA0A1W2PPD8 638 aa33.56■■■□□ 2.96
E4F1-203ENST00000563643 ADAMTS12P58397 1594 aa33.54■■■□□ 2.96
E4F1-203ENST00000563643 FAM69CQ0P6D2 419 aa33.49■■■□□ 2.95
E4F1-203ENST00000563643 ABCC10Q5T3U5 1492 aa33.49■■■□□ 2.95
E4F1-203ENST00000563643 PRG4Q92954 1404 aaPredicted RBP33.4■■■□□ 2.94
E4F1-203ENST00000563643 FHAD1B1AJZ9 1412 aa33.38■■■□□ 2.93
E4F1-203ENST00000563643 KDM6BO15054 1643 aa33.36■■■□□ 2.93
E4F1-203ENST00000563643 DIP2BQ9P265 1576 aa33.36■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms