RNA–Protein interactions for RNA: ENST00000563492.1

CDH11-208, Transcript of cadherin 11, humanhuman

TSL 5

Gene CDH11, Length 468 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11-208ENST00000563492 NISCHQ9Y2I1 1504 aa17.24■□□□□ 0.35
CDH11-208ENST00000563492 ABCC9O60706 1549 aa15.52■□□□□ 0.07
CDH11-208ENST00000563492 CCDC180Q9P1Z9 1646 aa15.32■□□□□ 0.04
CDH11-208ENST00000563492 DCAF8L2P0C7V8 631 aa14.7□□□□□ -0.06
CDH11-208ENST00000563492 DNAJC5BQ9UF47 199 aa14.66□□□□□ -0.06
CDH11-208ENST00000563492 RB1CC1Q8TDY2 1594 aa14.64□□□□□ -0.07
CDH11-208ENST00000563492 NACADO15069 1562 aa14.55□□□□□ -0.08
CDH11-208ENST00000563492 PABPN1Q86U42 306 aaKnown RBP eCLIP14.54□□□□□ -0.08
CDH11-208ENST00000563492 MYO15BQ96JP2 1530 aa14.32□□□□□ -0.12
CDH11-208ENST00000563492 ZCCHC6Q5VYS8 1495 aaKnown RBP14.28□□□□□ -0.12
CDH11-208ENST00000563492 BICRAQ9NZM4 1560 aa14.28□□□□□ -0.12
CDH11-208ENST00000563492 UNC13AQ9UPW8 1703 aa14.27□□□□□ -0.13
CDH11-208ENST00000563492 DCAF1Q9Y4B6 1507 aa14.16□□□□□ -0.14
CDH11-208ENST00000563492 SCRIBQ14160 1630 aa14.09□□□□□ -0.15
CDH11-208ENST00000563492 SHROOM4Q9ULL8 1493 aa13.96□□□□□ -0.17
CDH11-208ENST00000563492 CC2D2AQ9P2K1 1620 aa13.93□□□□□ -0.18
CDH11-208ENST00000563492 CECR2Q9BXF3 1484 aa13.93□□□□□ -0.18
CDH11-208ENST00000563492 EIF4G1Q04637 1599 aaKnown RBP13.91□□□□□ -0.18
CDH11-208ENST00000563492 NCAPD3P42695 1498 aa13.5□□□□□ -0.25
CDH11-208ENST00000563492 ATAD2BQ9ULI0 1458 aa13.48□□□□□ -0.25
CDH11-208ENST00000563492 SMARCA4P51532 1647 aa13.4□□□□□ -0.26
CDH11-208ENST00000563492 SMARCA2P51531 1590 aa13.36□□□□□ -0.27
CDH11-208ENST00000563492 DNAJC5Q9H3Z4 198 aa13.35□□□□□ -0.27
CDH11-208ENST00000563492 NESP48681 1621 aa13.35□□□□□ -0.27
CDH11-208ENST00000563492 MROH2BQ7Z745 1585 aa13.33□□□□□ -0.28
CDH11-208ENST00000563492 BAZ1AQ9NRL2 1556 aaPredicted RBP13.33□□□□□ -0.28
CDH11-208ENST00000563492 ERCC6Q03468 1493 aa13.33□□□□□ -0.28
CDH11-208ENST00000563492 HMGXB3Q12766 1538 aa13.33□□□□□ -0.28
CDH11-208ENST00000563492 BAZ1BQ9UIG0 1483 aaKnown RBP13.32□□□□□ -0.28
CDH11-208ENST00000563492 PEG3Q9GZU2 1588 aa13.25□□□□□ -0.29
CDH11-208ENST00000563492 CUX2O14529 1486 aa13.25□□□□□ -0.29
CDH11-208ENST00000563492 WIZO95785 1651 aa13.12□□□□□ -0.31
CDH11-208ENST00000563492 CADPSQ9ULU8 1353 aa13.11□□□□□ -0.31
CDH11-208ENST00000563492 LAMC3Q9Y6N6 1575 aa13.11□□□□□ -0.31
CDH11-208ENST00000563492 PDS5BQ9NTI5 1447 aa13.09□□□□□ -0.31
CDH11-208ENST00000563492 THOC2Q8NI27 1593 aaKnown RBP13.08□□□□□ -0.32
CDH11-208ENST00000563492 RSF1Q96T23 1441 aaPredicted RBP13.08□□□□□ -0.32
CDH11-208ENST00000563492 KIF21AQ7Z4S6 1674 aa13.04□□□□□ -0.32
CDH11-208ENST00000563492 MRC2Q9UBG0 1479 aa12.98□□□□□ -0.33
CDH11-208ENST00000563492 CFTRP13569 1480 aa12.95□□□□□ -0.34
CDH11-208ENST00000563492 FANCD2Q9BXW9 1451 aa12.95□□□□□ -0.34
CDH11-208ENST00000563492 TOP2AP11388 1531 aaKnown RBP12.93□□□□□ -0.34
CDH11-208ENST00000563492 CEP164Q9UPV0 1460 aa12.93□□□□□ -0.34
CDH11-208ENST00000563492 WDR62O43379 1518 aa12.93□□□□□ -0.34
CDH11-208ENST00000563492 CCDC88BA6NC98 1476 aa12.86□□□□□ -0.35
CDH11-208ENST00000563492 URB2Q14146 1524 aaKnown RBP12.86□□□□□ -0.35
CDH11-208ENST00000563492 TRIM41Q8WV44 630 aa12.82□□□□□ -0.36
CDH11-208ENST00000563492 OSCARQ8IYS5 282 aa12.75□□□□□ -0.37
CDH11-208ENST00000563492 ZNF608Q9ULD9 1512 aaPredicted RBP12.73□□□□□ -0.37
CDH11-208ENST00000563492 TOPBP1Q92547 1522 aa12.7□□□□□ -0.38
CDH11-208ENST00000563492 IFT140Q96RY7 1462 aa12.67□□□□□ -0.38
CDH11-208ENST00000563492 AQRO60306 1485 aaKnown RBP eCLIP12.63□□□□□ -0.39
CDH11-208ENST00000563492 PRDM2Q13029 1718 aa12.62□□□□□ -0.39
CDH11-208ENST00000563492 SUPT5HO00267 1087 aaKnown RBP12.61□□□□□ -0.39
CDH11-208ENST00000563492 DNMBPQ6XZF7 1577 aa12.6□□□□□ -0.39
CDH11-208ENST00000563492 ABCC8Q09428 1581 aa12.6□□□□□ -0.39
CDH11-208ENST00000563492 RAD54L2Q9Y4B4 1467 aa12.59□□□□□ -0.39
CDH11-208ENST00000563492 POLA1P09884 1462 aaPredicted RBP12.59□□□□□ -0.39
CDH11-208ENST00000563492 TDRD9Q8NDG6 1382 aaKnown RBP12.58□□□□□ -0.4
CDH11-208ENST00000563492 FBLN2P98095 1184 aa12.57□□□□□ -0.4
CDH11-208ENST00000563492 TARBP1Q13395 1621 aaKnown RBP12.55□□□□□ -0.4
CDH11-208ENST00000563492 SOGA1O94964 1423 aa12.55□□□□□ -0.4
CDH11-208ENST00000563492 EIF4G3O43432 1585 aaKnown RBP12.55□□□□□ -0.4
CDH11-208ENST00000563492 CYB5RLQ6IPT4 315 aa12.51□□□□□ -0.41
CDH11-208ENST00000563492 FGD5Q6ZNL6 1462 aa12.51□□□□□ -0.41
CDH11-208ENST00000563492 CUX1P39880 1505 aa12.51□□□□□ -0.41
CDH11-208ENST00000563492 RIMBP3CA6NJZ7 1639 aa12.51□□□□□ -0.41
CDH11-208ENST00000563492 RIMBP3BA6NNM3 1639 aa12.51□□□□□ -0.41
CDH11-208ENST00000563492 RIMBP3Q9UFD9 1639 aa12.51□□□□□ -0.41
CDH11-208ENST00000563492 ARHGEF11O15085 1522 aa12.49□□□□□ -0.41
CDH11-208ENST00000563492 SNAPC4Q5SXM2 1469 aa12.45□□□□□ -0.42
CDH11-208ENST00000563492 CHMP7Q8WUX9 453 aaPredicted RBP12.44□□□□□ -0.42
CDH11-208ENST00000563492 CHD1O14646 1710 aa12.42□□□□□ -0.42
CDH11-208ENST00000563492 ARAP1Q96P48 1450 aa12.4□□□□□ -0.42
CDH11-208ENST00000563492 GRIN2BQ13224 1484 aa12.4□□□□□ -0.43
CDH11-208ENST00000563492 GAPVD1Q14C86 1478 aa12.36□□□□□ -0.43
CDH11-208ENST00000563492 MAGI1Q96QZ7 1491 aaPredicted RBP12.35□□□□□ -0.43
CDH11-208ENST00000563492 SYNJ2O15056 1496 aa12.34□□□□□ -0.43
CDH11-208ENST00000563492 TRHP20396 242 aaPredicted RBP12.34□□□□□ -0.43
CDH11-208ENST00000563492 CLASP1Q7Z460 1538 aa12.33□□□□□ -0.44
CDH11-208ENST00000563492 ABCA10Q8WWZ4 1543 aa12.33□□□□□ -0.44
CDH11-208ENST00000563492 WRNQ14191 1432 aaPredicted RBP eCLIP12.31□□□□□ -0.44
CDH11-208ENST00000563492 WDR97A6NE52 1622 aa12.31□□□□□ -0.44
CDH11-208ENST00000563492 SYNJ1O43426 1573 aa12.28□□□□□ -0.44
CDH11-208ENST00000563492 ABCA5Q8WWZ7 1642 aa12.28□□□□□ -0.44
CDH11-208ENST00000563492 PBRM1Q86U86 1689 aa12.25□□□□□ -0.45
CDH11-208ENST00000563492 TOP2BQ02880 1626 aa12.24□□□□□ -0.45
CDH11-208ENST00000563492 GRIN2AQ12879 1464 aa12.24□□□□□ -0.45
CDH11-208ENST00000563492 ERCC6L2Q5T890 1561 aa12.22□□□□□ -0.45
CDH11-208ENST00000563492 BIVM-ERCC5R4GMW8 1640 aa12.21□□□□□ -0.46
CDH11-208ENST00000563492 FHAD1B1AJZ9 1412 aa12.2□□□□□ -0.46
CDH11-208ENST00000563492 NUP160Q12769 1436 aa12.2□□□□□ -0.46
CDH11-208ENST00000563492 ADAMTS12P58397 1594 aa12.19□□□□□ -0.46
CDH11-208ENST00000563492 CEP170Q5SW79 1584 aa12.19□□□□□ -0.46
CDH11-208ENST00000563492 JPH4Q96JJ6 628 aa12.14□□□□□ -0.47
CDH11-208ENST00000563492 ERICH3Q5RHP9 1530 aa12.14□□□□□ -0.47
CDH11-208ENST00000563492 PRG4Q92954 1404 aaPredicted RBP12.12□□□□□ -0.47
CDH11-208ENST00000563492 IGF1RP08069 1367 aa12.12□□□□□ -0.47
CDH11-208ENST00000563492 SHROOM2Q13796 1616 aa12.08□□□□□ -0.48
CDH11-208ENST00000563492 KIF27Q86VH2 1401 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms