RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 NISCHQ9Y2I1 1504 aa35.09■■■■□ 3.21
SMPD3-204ENST00000563396 CCDC180Q9P1Z9 1646 aa31.49■■■□□ 2.63
SMPD3-204ENST00000563396 ABCC9O60706 1549 aa30.84■■■□□ 2.53
SMPD3-204ENST00000563396 RB1CC1Q8TDY2 1594 aa29.67■■■□□ 2.34
SMPD3-204ENST00000563396 NACADO15069 1562 aa29.57■■■□□ 2.32
SMPD3-204ENST00000563396 MYO15BQ96JP2 1530 aa29.37■■■□□ 2.29
SMPD3-204ENST00000563396 ZCCHC6Q5VYS8 1495 aaKnown RBP29.23■■■□□ 2.27
SMPD3-204ENST00000563396 DCAF1Q9Y4B6 1507 aa29.12■■■□□ 2.25
SMPD3-204ENST00000563396 UNC13AQ9UPW8 1703 aa29.1■■■□□ 2.25
SMPD3-204ENST00000563396 DCAF8L2P0C7V8 631 aa29.05■■■□□ 2.24
SMPD3-204ENST00000563396 BICRAQ9NZM4 1560 aa28.82■■■□□ 2.2
SMPD3-204ENST00000563396 PABPN1Q86U42 306 aaKnown RBP eCLIP28.63■■■□□ 2.17
SMPD3-204ENST00000563396 SHROOM4Q9ULL8 1493 aa28.57■■■□□ 2.16
SMPD3-204ENST00000563396 SCRIBQ14160 1630 aa28.55■■■□□ 2.16
SMPD3-204ENST00000563396 DNAJC5BQ9UF47 199 aa28.48■■■□□ 2.15
SMPD3-204ENST00000563396 EIF4G1Q04637 1599 aaKnown RBP28.06■■■□□ 2.08
SMPD3-204ENST00000563396 CC2D2AQ9P2K1 1620 aa27.99■■■□□ 2.07
SMPD3-204ENST00000563396 CECR2Q9BXF3 1484 aa27.77■■■□□ 2.04
SMPD3-204ENST00000563396 SMARCA4P51532 1647 aa27.35■■□□□ 1.97
SMPD3-204ENST00000563396 BAZ1AQ9NRL2 1556 aaPredicted RBP27.25■■□□□ 1.95
SMPD3-204ENST00000563396 NCAPD3P42695 1498 aa27.25■■□□□ 1.95
SMPD3-204ENST00000563396 SMARCA2P51531 1590 aa27.2■■□□□ 1.94
SMPD3-204ENST00000563396 ATAD2BQ9ULI0 1458 aa27.19■■□□□ 1.94
SMPD3-204ENST00000563396 HMGXB3Q12766 1538 aa27.18■■□□□ 1.94
SMPD3-204ENST00000563396 PEG3Q9GZU2 1588 aa27.15■■□□□ 1.94
SMPD3-204ENST00000563396 MROH2BQ7Z745 1585 aa27.01■■□□□ 1.92
SMPD3-204ENST00000563396 BAZ1BQ9UIG0 1483 aaKnown RBP26.95■■□□□ 1.91
SMPD3-204ENST00000563396 WIZO95785 1651 aa26.73■■□□□ 1.87
SMPD3-204ENST00000563396 LAMC3Q9Y6N6 1575 aa26.63■■□□□ 1.85
SMPD3-204ENST00000563396 NESP48681 1621 aa26.63■■□□□ 1.85
SMPD3-204ENST00000563396 ERCC6Q03468 1493 aa26.6■■□□□ 1.85
SMPD3-204ENST00000563396 RSF1Q96T23 1441 aaPredicted RBP26.56■■□□□ 1.84
SMPD3-204ENST00000563396 CUX2O14529 1486 aa26.55■■□□□ 1.84
SMPD3-204ENST00000563396 TOP2AP11388 1531 aaKnown RBP26.47■■□□□ 1.83
SMPD3-204ENST00000563396 THOC2Q8NI27 1593 aaKnown RBP26.46■■□□□ 1.83
SMPD3-204ENST00000563396 KIF21AQ7Z4S6 1674 aa26.44■■□□□ 1.82
SMPD3-204ENST00000563396 CADPSQ9ULU8 1353 aa26.36■■□□□ 1.81
SMPD3-204ENST00000563396 PDS5BQ9NTI5 1447 aa26.34■■□□□ 1.81
SMPD3-204ENST00000563396 CFTRP13569 1480 aa26.22■■□□□ 1.79
SMPD3-204ENST00000563396 PRDM2Q13029 1718 aa26.18■■□□□ 1.78
SMPD3-204ENST00000563396 MRC2Q9UBG0 1479 aa26.16■■□□□ 1.78
SMPD3-204ENST00000563396 WDR62O43379 1518 aa26.15■■□□□ 1.78
SMPD3-204ENST00000563396 CEP164Q9UPV0 1460 aa26.12■■□□□ 1.77
SMPD3-204ENST00000563396 FANCD2Q9BXW9 1451 aa26.1■■□□□ 1.77
SMPD3-204ENST00000563396 CCDC88BA6NC98 1476 aa26.05■■□□□ 1.76
SMPD3-204ENST00000563396 DNAJC5Q9H3Z4 198 aa25.91■■□□□ 1.74
SMPD3-204ENST00000563396 URB2Q14146 1524 aaKnown RBP25.88■■□□□ 1.73
SMPD3-204ENST00000563396 TOPBP1Q92547 1522 aa25.68■■□□□ 1.7
SMPD3-204ENST00000563396 DNMBPQ6XZF7 1577 aa25.67■■□□□ 1.7
SMPD3-204ENST00000563396 ABCC8Q09428 1581 aa25.65■■□□□ 1.7
SMPD3-204ENST00000563396 IFT140Q96RY7 1462 aa25.58■■□□□ 1.69
SMPD3-204ENST00000563396 TARBP1Q13395 1621 aaKnown RBP25.49■■□□□ 1.67
SMPD3-204ENST00000563396 EIF4G3O43432 1585 aaKnown RBP25.47■■□□□ 1.67
SMPD3-204ENST00000563396 ZNF608Q9ULD9 1512 aaPredicted RBP25.46■■□□□ 1.67
SMPD3-204ENST00000563396 POLA1P09884 1462 aaPredicted RBP25.44■■□□□ 1.66
SMPD3-204ENST00000563396 SUPT5HO00267 1087 aaKnown RBP25.4■■□□□ 1.66
SMPD3-204ENST00000563396 CUX1P39880 1505 aa25.37■■□□□ 1.65
SMPD3-204ENST00000563396 WDR97A6NE52 1622 aa25.34■■□□□ 1.65
SMPD3-204ENST00000563396 FGD5Q6ZNL6 1462 aa25.32■■□□□ 1.64
SMPD3-204ENST00000563396 RAD54L2Q9Y4B4 1467 aa25.25■■□□□ 1.63
SMPD3-204ENST00000563396 SOGA1O94964 1423 aa25.22■■□□□ 1.63
SMPD3-204ENST00000563396 AQRO60306 1485 aaKnown RBP eCLIP25.21■■□□□ 1.63
SMPD3-204ENST00000563396 CHD1O14646 1710 aa25.2■■□□□ 1.62
SMPD3-204ENST00000563396 BIVM-ERCC5R4GMW8 1640 aa25.18■■□□□ 1.62
SMPD3-204ENST00000563396 OSCARQ8IYS5 282 aa25.17■■□□□ 1.62
SMPD3-204ENST00000563396 TOP2BQ02880 1626 aa25.12■■□□□ 1.61
SMPD3-204ENST00000563396 PBRM1Q86U86 1689 aa25.1■■□□□ 1.61
SMPD3-204ENST00000563396 ABCA5Q8WWZ7 1642 aa25.1■■□□□ 1.61
SMPD3-204ENST00000563396 ABCA10Q8WWZ4 1543 aa25.09■■□□□ 1.61
SMPD3-204ENST00000563396 SYNJ1O43426 1573 aa25.09■■□□□ 1.61
SMPD3-204ENST00000563396 TDRD9Q8NDG6 1382 aaKnown RBP25.08■■□□□ 1.61
SMPD3-204ENST00000563396 SNAPC4Q5SXM2 1469 aa25.06■■□□□ 1.6
SMPD3-204ENST00000563396 MAGI1Q96QZ7 1491 aaPredicted RBP25.06■■□□□ 1.6
SMPD3-204ENST00000563396 WRNQ14191 1432 aaPredicted RBP eCLIP25.04■■□□□ 1.6
SMPD3-204ENST00000563396 GRIN2BQ13224 1484 aa25.04■■□□□ 1.6
SMPD3-204ENST00000563396 RIMBP3CA6NJZ7 1639 aa25.02■■□□□ 1.6
SMPD3-204ENST00000563396 RIMBP3BA6NNM3 1639 aa25.02■■□□□ 1.6
SMPD3-204ENST00000563396 RIMBP3Q9UFD9 1639 aa25.02■■□□□ 1.6
SMPD3-204ENST00000563396 GAPVD1Q14C86 1478 aa24.99■■□□□ 1.59
SMPD3-204ENST00000563396 ARHGEF11O15085 1522 aa24.96■■□□□ 1.59
SMPD3-204ENST00000563396 SYNJ2O15056 1496 aa24.94■■□□□ 1.58
SMPD3-204ENST00000563396 CLASP1Q7Z460 1538 aa24.92■■□□□ 1.58
SMPD3-204ENST00000563396 ADAMTS12P58397 1594 aa24.87■■□□□ 1.57
SMPD3-204ENST00000563396 TRIM41Q8WV44 630 aa24.81■■□□□ 1.56
SMPD3-204ENST00000563396 ERICH3Q5RHP9 1530 aa24.81■■□□□ 1.56
SMPD3-204ENST00000563396 FBLN2P98095 1184 aa24.8■■□□□ 1.56
SMPD3-204ENST00000563396 CHMP7Q8WUX9 453 aaPredicted RBP24.76■■□□□ 1.55
SMPD3-204ENST00000563396 GRIN2AQ12879 1464 aa24.75■■□□□ 1.55
SMPD3-204ENST00000563396 ARAP1Q96P48 1450 aa24.74■■□□□ 1.55
SMPD3-204ENST00000563396 FHAD1B1AJZ9 1412 aa24.69■■□□□ 1.54
SMPD3-204ENST00000563396 NUP160Q12769 1436 aa24.68■■□□□ 1.54
SMPD3-204ENST00000563396 CEP170Q5SW79 1584 aa24.67■■□□□ 1.54
SMPD3-204ENST00000563396 SHROOM2Q13796 1616 aa24.61■■□□□ 1.53
SMPD3-204ENST00000563396 CUL7Q14999 1698 aa24.56■■□□□ 1.52
SMPD3-204ENST00000563396 KIF27Q86VH2 1401 aa24.53■■□□□ 1.52
SMPD3-204ENST00000563396 RUSC2Q8N2Y8 1516 aa24.53■■□□□ 1.52
SMPD3-204ENST00000563396 CYB5RLQ6IPT4 315 aa24.51■■□□□ 1.51
SMPD3-204ENST00000563396 ERCC6L2Q5T890 1561 aa24.48■■□□□ 1.51
SMPD3-204ENST00000563396 IGF1RP08069 1367 aa24.42■■□□□ 1.5
SMPD3-204ENST00000563396 KIAA0586Q9BVV6 1533 aa24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms