RNA–Protein interactions for RNA: ENST00000563348.1

TRADD-203, Transcript of TNFRSF1A associated via death domain, humanhuman

TSL 2

Gene TRADD, Length 833 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRADD-203ENST00000563348 NISCHQ9Y2I1 1504 aa46.58■■■■■ 5.05
TRADD-203ENST00000563348 CCDC180Q9P1Z9 1646 aa41.42■■■■■ 4.22
TRADD-203ENST00000563348 ABCC9O60706 1549 aa40.92■■■■■ 4.14
TRADD-203ENST00000563348 RB1CC1Q8TDY2 1594 aa39.18■■■■□ 3.86
TRADD-203ENST00000563348 DCAF8L2P0C7V8 631 aa39.15■■■■□ 3.86
TRADD-203ENST00000563348 NACADO15069 1562 aa39.1■■■■□ 3.85
TRADD-203ENST00000563348 MYO15BQ96JP2 1530 aa38.79■■■■□ 3.8
TRADD-203ENST00000563348 ZCCHC6Q5VYS8 1495 aaKnown RBP38.71■■■■□ 3.79
TRADD-203ENST00000563348 DCAF1Q9Y4B6 1507 aa38.52■■■■□ 3.76
TRADD-203ENST00000563348 PABPN1Q86U42 306 aaKnown RBP eCLIP38.28■■■■□ 3.72
TRADD-203ENST00000563348 UNC13AQ9UPW8 1703 aa38.18■■■■□ 3.7
TRADD-203ENST00000563348 BICRAQ9NZM4 1560 aa38.02■■■■□ 3.68
TRADD-203ENST00000563348 DNAJC5BQ9UF47 199 aa37.94■■■■□ 3.66
TRADD-203ENST00000563348 SCRIBQ14160 1630 aa37.79■■■■□ 3.64
TRADD-203ENST00000563348 SHROOM4Q9ULL8 1493 aa37.59■■■■□ 3.61
TRADD-203ENST00000563348 EIF4G1Q04637 1599 aaKnown RBP37.04■■■■□ 3.52
TRADD-203ENST00000563348 CC2D2AQ9P2K1 1620 aa36.95■■■■□ 3.51
TRADD-203ENST00000563348 CECR2Q9BXF3 1484 aa36.81■■■■□ 3.48
TRADD-203ENST00000563348 NCAPD3P42695 1498 aa36.15■■■■□ 3.38
TRADD-203ENST00000563348 SMARCA4P51532 1647 aa36.14■■■■□ 3.38
TRADD-203ENST00000563348 ATAD2BQ9ULI0 1458 aa36.1■■■■□ 3.37
TRADD-203ENST00000563348 BAZ1AQ9NRL2 1556 aaPredicted RBP36.09■■■■□ 3.37
TRADD-203ENST00000563348 SMARCA2P51531 1590 aa35.99■■■■□ 3.35
TRADD-203ENST00000563348 MROH2BQ7Z745 1585 aa35.89■■■■□ 3.34
TRADD-203ENST00000563348 HMGXB3Q12766 1538 aa35.85■■■■□ 3.33
TRADD-203ENST00000563348 PEG3Q9GZU2 1588 aa35.82■■■■□ 3.32
TRADD-203ENST00000563348 BAZ1BQ9UIG0 1483 aaKnown RBP35.75■■■■□ 3.31
TRADD-203ENST00000563348 WIZO95785 1651 aa35.43■■■■□ 3.26
TRADD-203ENST00000563348 RSF1Q96T23 1441 aaPredicted RBP35.42■■■■□ 3.26
TRADD-203ENST00000563348 NESP48681 1621 aa35.32■■■■□ 3.24
TRADD-203ENST00000563348 ERCC6Q03468 1493 aa35.28■■■■□ 3.24
TRADD-203ENST00000563348 LAMC3Q9Y6N6 1575 aa35.15■■■■□ 3.22
TRADD-203ENST00000563348 CADPSQ9ULU8 1353 aa35.1■■■■□ 3.21
TRADD-203ENST00000563348 TOP2AP11388 1531 aaKnown RBP35.06■■■■□ 3.2
TRADD-203ENST00000563348 CUX2O14529 1486 aa35.01■■■■□ 3.19
TRADD-203ENST00000563348 PDS5BQ9NTI5 1447 aa35■■■■□ 3.19
TRADD-203ENST00000563348 CFTRP13569 1480 aa34.79■■■■□ 3.16
TRADD-203ENST00000563348 KIF21AQ7Z4S6 1674 aa34.78■■■■□ 3.16
TRADD-203ENST00000563348 THOC2Q8NI27 1593 aaKnown RBP34.76■■■■□ 3.16
TRADD-203ENST00000563348 CCDC88BA6NC98 1476 aa34.71■■■■□ 3.15
TRADD-203ENST00000563348 FANCD2Q9BXW9 1451 aa34.64■■■■□ 3.14
TRADD-203ENST00000563348 MRC2Q9UBG0 1479 aa34.61■■■■□ 3.13
TRADD-203ENST00000563348 CEP164Q9UPV0 1460 aa34.59■■■■□ 3.13
TRADD-203ENST00000563348 WDR62O43379 1518 aa34.48■■■■□ 3.11
TRADD-203ENST00000563348 DNAJC5Q9H3Z4 198 aa34.4■■■■□ 3.1
TRADD-203ENST00000563348 SUPT5HO00267 1087 aaKnown RBP34.36■■■■□ 3.09
TRADD-203ENST00000563348 PRDM2Q13029 1718 aa34.3■■■■□ 3.08
TRADD-203ENST00000563348 URB2Q14146 1524 aaKnown RBP34.3■■■■□ 3.08
TRADD-203ENST00000563348 ABCC8Q09428 1581 aa34.05■■■■□ 3.04
TRADD-203ENST00000563348 TOPBP1Q92547 1522 aa34.04■■■■□ 3.04
TRADD-203ENST00000563348 DNMBPQ6XZF7 1577 aa33.94■■■■□ 3.02
TRADD-203ENST00000563348 IFT140Q96RY7 1462 aa33.91■■■■□ 3.02
TRADD-203ENST00000563348 ZNF608Q9ULD9 1512 aaPredicted RBP33.79■■■■□ 3
TRADD-203ENST00000563348 POLA1P09884 1462 aaPredicted RBP33.74■■■□□ 2.99
TRADD-203ENST00000563348 CUX1P39880 1505 aa33.66■■■□□ 2.98
TRADD-203ENST00000563348 TARBP1Q13395 1621 aaKnown RBP33.65■■■□□ 2.98
TRADD-203ENST00000563348 SOGA1O94964 1423 aa33.65■■■□□ 2.98
TRADD-203ENST00000563348 OSCARQ8IYS5 282 aa33.63■■■□□ 2.97
TRADD-203ENST00000563348 RAD54L2Q9Y4B4 1467 aa33.62■■■□□ 2.97
TRADD-203ENST00000563348 FGD5Q6ZNL6 1462 aa33.6■■■□□ 2.97
TRADD-203ENST00000563348 AQRO60306 1485 aaKnown RBP eCLIP33.59■■■□□ 2.97
TRADD-203ENST00000563348 EIF4G3O43432 1585 aaKnown RBP33.54■■■□□ 2.96
TRADD-203ENST00000563348 TDRD9Q8NDG6 1382 aaKnown RBP33.5■■■□□ 2.95
TRADD-203ENST00000563348 WRNQ14191 1432 aaPredicted RBP eCLIP33.38■■■□□ 2.93
TRADD-203ENST00000563348 WDR97A6NE52 1622 aa33.35■■■□□ 2.93
TRADD-203ENST00000563348 FBLN2P98095 1184 aa33.28■■■□□ 2.92
TRADD-203ENST00000563348 TOP2BQ02880 1626 aa33.28■■■□□ 2.92
TRADD-203ENST00000563348 ABCA10Q8WWZ4 1543 aa33.28■■■□□ 2.92
TRADD-203ENST00000563348 GRIN2BQ13224 1484 aa33.25■■■□□ 2.91
TRADD-203ENST00000563348 SYNJ1O43426 1573 aa33.25■■■□□ 2.91
TRADD-203ENST00000563348 BIVM-ERCC5R4GMW8 1640 aa33.24■■■□□ 2.91
TRADD-203ENST00000563348 GAPVD1Q14C86 1478 aa33.22■■■□□ 2.91
TRADD-203ENST00000563348 SNAPC4Q5SXM2 1469 aa33.21■■■□□ 2.91
TRADD-203ENST00000563348 MAGI1Q96QZ7 1491 aaPredicted RBP33.18■■■□□ 2.9
TRADD-203ENST00000563348 CHMP7Q8WUX9 453 aaPredicted RBP33.16■■■□□ 2.9
TRADD-203ENST00000563348 CHD1O14646 1710 aa33.14■■■□□ 2.9
TRADD-203ENST00000563348 TRIM41Q8WV44 630 aa33.1■■■□□ 2.89
TRADD-203ENST00000563348 ABCA5Q8WWZ7 1642 aa33.1■■■□□ 2.89
TRADD-203ENST00000563348 SYNJ2O15056 1496 aa33.05■■■□□ 2.88
TRADD-203ENST00000563348 PBRM1Q86U86 1689 aa33.02■■■□□ 2.88
TRADD-203ENST00000563348 ARHGEF11O15085 1522 aa32.96■■■□□ 2.87
TRADD-203ENST00000563348 RIMBP3CA6NJZ7 1639 aa32.95■■■□□ 2.87
TRADD-203ENST00000563348 RIMBP3BA6NNM3 1639 aa32.95■■■□□ 2.87
TRADD-203ENST00000563348 RIMBP3Q9UFD9 1639 aa32.95■■■□□ 2.87
TRADD-203ENST00000563348 ERICH3Q5RHP9 1530 aa32.85■■■□□ 2.85
TRADD-203ENST00000563348 CLASP1Q7Z460 1538 aa32.85■■■□□ 2.85
TRADD-203ENST00000563348 FHAD1B1AJZ9 1412 aa32.84■■■□□ 2.85
TRADD-203ENST00000563348 ADAMTS12P58397 1594 aa32.8■■■□□ 2.84
TRADD-203ENST00000563348 GRIN2AQ12879 1464 aa32.8■■■□□ 2.84
TRADD-203ENST00000563348 CYB5RLQ6IPT4 315 aa32.79■■■□□ 2.84
TRADD-203ENST00000563348 KIF27Q86VH2 1401 aa32.72■■■□□ 2.83
TRADD-203ENST00000563348 NUP160Q12769 1436 aa32.69■■■□□ 2.82
TRADD-203ENST00000563348 IGF1RP08069 1367 aa32.69■■■□□ 2.82
TRADD-203ENST00000563348 ARAP1Q96P48 1450 aa32.68■■■□□ 2.82
TRADD-203ENST00000563348 CEP170Q5SW79 1584 aa32.62■■■□□ 2.81
TRADD-203ENST00000563348 CARMIL1Q5VZK9 1371 aa32.46■■■□□ 2.79
TRADD-203ENST00000563348 JPH4Q96JJ6 628 aa32.45■■■□□ 2.79
TRADD-203ENST00000563348 CUL7Q14999 1698 aa32.43■■■□□ 2.78
TRADD-203ENST00000563348 SHROOM2Q13796 1616 aa32.4■■■□□ 2.78
TRADD-203ENST00000563348 ERCC6L2Q5T890 1561 aa32.39■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms