RNA–Protein interactions for RNA: ENST00000563275.1

PKM-208, Transcript of pyruvate kinase M1/2, humanhuman

TSL 1 (best)

Gene PKM, Length 699 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKM-208ENST00000563275 NISCHQ9Y2I1 1504 aa31.29■■■□□ 2.6
PKM-208ENST00000563275 CCDC180Q9P1Z9 1646 aa27.93■■■□□ 2.06
PKM-208ENST00000563275 ABCC9O60706 1549 aa27.58■■■□□ 2.01
PKM-208ENST00000563275 RB1CC1Q8TDY2 1594 aa26.42■■□□□ 1.82
PKM-208ENST00000563275 NACADO15069 1562 aa26.35■■□□□ 1.81
PKM-208ENST00000563275 MYO15BQ96JP2 1530 aa26.18■■□□□ 1.78
PKM-208ENST00000563275 DCAF8L2P0C7V8 631 aa26.07■■□□□ 1.76
PKM-208ENST00000563275 ZCCHC6Q5VYS8 1495 aaKnown RBP26.02■■□□□ 1.76
PKM-208ENST00000563275 DCAF1Q9Y4B6 1507 aa25.93■■□□□ 1.74
PKM-208ENST00000563275 UNC13AQ9UPW8 1703 aa25.8■■□□□ 1.72
PKM-208ENST00000563275 PABPN1Q86U42 306 aaKnown RBP eCLIP25.71■■□□□ 1.71
PKM-208ENST00000563275 BICRAQ9NZM4 1560 aa25.7■■□□□ 1.71
PKM-208ENST00000563275 DNAJC5BQ9UF47 199 aa25.68■■□□□ 1.7
PKM-208ENST00000563275 SHROOM4Q9ULL8 1493 aa25.43■■□□□ 1.66
PKM-208ENST00000563275 SCRIBQ14160 1630 aa25.41■■□□□ 1.66
PKM-208ENST00000563275 EIF4G1Q04637 1599 aaKnown RBP25.01■■□□□ 1.59
PKM-208ENST00000563275 CC2D2AQ9P2K1 1620 aa24.97■■□□□ 1.59
PKM-208ENST00000563275 CECR2Q9BXF3 1484 aa24.84■■□□□ 1.57
PKM-208ENST00000563275 NCAPD3P42695 1498 aa24.36■■□□□ 1.49
PKM-208ENST00000563275 SMARCA4P51532 1647 aa24.32■■□□□ 1.48
PKM-208ENST00000563275 ATAD2BQ9ULI0 1458 aa24.3■■□□□ 1.48
PKM-208ENST00000563275 BAZ1AQ9NRL2 1556 aaPredicted RBP24.25■■□□□ 1.47
PKM-208ENST00000563275 SMARCA2P51531 1590 aa24.21■■□□□ 1.47
PKM-208ENST00000563275 HMGXB3Q12766 1538 aa24.19■■□□□ 1.46
PKM-208ENST00000563275 PEG3Q9GZU2 1588 aa24.16■■□□□ 1.46
PKM-208ENST00000563275 MROH2BQ7Z745 1585 aa24.1■■□□□ 1.45
PKM-208ENST00000563275 BAZ1BQ9UIG0 1483 aaKnown RBP24.03■■□□□ 1.44
PKM-208ENST00000563275 NESP48681 1621 aa23.81■■□□□ 1.4
PKM-208ENST00000563275 WIZO95785 1651 aa23.77■■□□□ 1.4
PKM-208ENST00000563275 ERCC6Q03468 1493 aa23.76■■□□□ 1.39
PKM-208ENST00000563275 RSF1Q96T23 1441 aaPredicted RBP23.73■■□□□ 1.39
PKM-208ENST00000563275 LAMC3Q9Y6N6 1575 aa23.71■■□□□ 1.39
PKM-208ENST00000563275 CUX2O14529 1486 aa23.71■■□□□ 1.39
PKM-208ENST00000563275 CADPSQ9ULU8 1353 aa23.6■■□□□ 1.37
PKM-208ENST00000563275 PDS5BQ9NTI5 1447 aa23.55■■□□□ 1.36
PKM-208ENST00000563275 TOP2AP11388 1531 aaKnown RBP23.54■■□□□ 1.36
PKM-208ENST00000563275 THOC2Q8NI27 1593 aaKnown RBP23.54■■□□□ 1.36
PKM-208ENST00000563275 KIF21AQ7Z4S6 1674 aa23.47■■□□□ 1.35
PKM-208ENST00000563275 CFTRP13569 1480 aa23.42■■□□□ 1.34
PKM-208ENST00000563275 DNAJC5Q9H3Z4 198 aa23.35■■□□□ 1.33
PKM-208ENST00000563275 MRC2Q9UBG0 1479 aa23.34■■□□□ 1.33
PKM-208ENST00000563275 WDR62O43379 1518 aa23.31■■□□□ 1.32
PKM-208ENST00000563275 FANCD2Q9BXW9 1451 aa23.3■■□□□ 1.32
PKM-208ENST00000563275 CEP164Q9UPV0 1460 aa23.29■■□□□ 1.32
PKM-208ENST00000563275 CCDC88BA6NC98 1476 aa23.27■■□□□ 1.32
PKM-208ENST00000563275 URB2Q14146 1524 aaKnown RBP23.12■■□□□ 1.29
PKM-208ENST00000563275 PRDM2Q13029 1718 aa23.11■■□□□ 1.29
PKM-208ENST00000563275 TOPBP1Q92547 1522 aa22.91■■□□□ 1.26
PKM-208ENST00000563275 ABCC8Q09428 1581 aa22.87■■□□□ 1.25
PKM-208ENST00000563275 DNMBPQ6XZF7 1577 aa22.84■■□□□ 1.25
PKM-208ENST00000563275 IFT140Q96RY7 1462 aa22.84■■□□□ 1.25
PKM-208ENST00000563275 ZNF608Q9ULD9 1512 aaPredicted RBP22.77■■□□□ 1.24
PKM-208ENST00000563275 SUPT5HO00267 1087 aaKnown RBP22.72■■□□□ 1.23
PKM-208ENST00000563275 TARBP1Q13395 1621 aaKnown RBP22.7■■□□□ 1.22
PKM-208ENST00000563275 POLA1P09884 1462 aaPredicted RBP22.69■■□□□ 1.22
PKM-208ENST00000563275 EIF4G3O43432 1585 aaKnown RBP22.63■■□□□ 1.21
PKM-208ENST00000563275 CUX1P39880 1505 aa22.63■■□□□ 1.21
PKM-208ENST00000563275 OSCARQ8IYS5 282 aa22.62■■□□□ 1.21
PKM-208ENST00000563275 AQRO60306 1485 aaKnown RBP eCLIP22.58■■□□□ 1.22e-7■■■■□ 23.6
PKM-208ENST00000563275 FGD5Q6ZNL6 1462 aa22.58■■□□□ 1.2
PKM-208ENST00000563275 RAD54L2Q9Y4B4 1467 aa22.58■■□□□ 1.2
PKM-208ENST00000563275 SOGA1O94964 1423 aa22.56■■□□□ 1.2
PKM-208ENST00000563275 WDR97A6NE52 1622 aa22.5■■□□□ 1.19
PKM-208ENST00000563275 TDRD9Q8NDG6 1382 aaKnown RBP22.47■■□□□ 1.19
PKM-208ENST00000563275 ABCA10Q8WWZ4 1543 aa22.38■■□□□ 1.17
PKM-208ENST00000563275 CHD1O14646 1710 aa22.37■■□□□ 1.17
PKM-208ENST00000563275 SNAPC4Q5SXM2 1469 aa22.36■■□□□ 1.17
PKM-208ENST00000563275 GRIN2BQ13224 1484 aa22.35■■□□□ 1.17
PKM-208ENST00000563275 MAGI1Q96QZ7 1491 aaPredicted RBP22.34■■□□□ 1.17
PKM-208ENST00000563275 WRNQ14191 1432 aaPredicted RBP eCLIP22.34■■□□□ 1.17
PKM-208ENST00000563275 TOP2BQ02880 1626 aa22.34■■□□□ 1.17
PKM-208ENST00000563275 BIVM-ERCC5R4GMW8 1640 aa22.33■■□□□ 1.17
PKM-208ENST00000563275 SYNJ1O43426 1573 aa22.31■■□□□ 1.16
PKM-208ENST00000563275 TRIM41Q8WV44 630 aa22.31■■□□□ 1.16
PKM-208ENST00000563275 RIMBP3CA6NJZ7 1639 aa22.31■■□□□ 1.16
PKM-208ENST00000563275 RIMBP3BA6NNM3 1639 aa22.31■■□□□ 1.16
PKM-208ENST00000563275 ABCA5Q8WWZ7 1642 aa22.31■■□□□ 1.16
PKM-208ENST00000563275 RIMBP3Q9UFD9 1639 aa22.31■■□□□ 1.16
PKM-208ENST00000563275 GAPVD1Q14C86 1478 aa22.3■■□□□ 1.16
PKM-208ENST00000563275 ARHGEF11O15085 1522 aa22.3■■□□□ 1.16
PKM-208ENST00000563275 FBLN2P98095 1184 aa22.25■■□□□ 1.15
PKM-208ENST00000563275 SYNJ2O15056 1496 aa22.25■■□□□ 1.15
PKM-208ENST00000563275 PBRM1Q86U86 1689 aa22.23■■□□□ 1.15
PKM-208ENST00000563275 CLASP1Q7Z460 1538 aa22.22■■□□□ 1.15
PKM-208ENST00000563275 CHMP7Q8WUX9 453 aaPredicted RBP22.19■■□□□ 1.14
PKM-208ENST00000563275 ARAP1Q96P48 1450 aa22.11■■□□□ 1.13
PKM-208ENST00000563275 ADAMTS12P58397 1594 aa22.11■■□□□ 1.13
PKM-208ENST00000563275 ERICH3Q5RHP9 1530 aa22.09■■□□□ 1.13
PKM-208ENST00000563275 GRIN2AQ12879 1464 aa22.08■■□□□ 1.12
PKM-208ENST00000563275 FHAD1B1AJZ9 1412 aa22.06■■□□□ 1.12
PKM-208ENST00000563275 NUP160Q12769 1436 aa22.04■■□□□ 1.12
PKM-208ENST00000563275 CYB5RLQ6IPT4 315 aa22.03■■□□□ 1.12
PKM-208ENST00000563275 CEP170Q5SW79 1584 aa21.98■■□□□ 1.11
PKM-208ENST00000563275 SHROOM2Q13796 1616 aa21.89■■□□□ 1.09
PKM-208ENST00000563275 KIF27Q86VH2 1401 aa21.89■■□□□ 1.09
PKM-208ENST00000563275 IGF1RP08069 1367 aa21.88■■□□□ 1.09
PKM-208ENST00000563275 ERCC6L2Q5T890 1561 aa21.86■■□□□ 1.09
PKM-208ENST00000563275 RUSC2Q8N2Y8 1516 aa21.79■■□□□ 1.08
PKM-208ENST00000563275 CUL7Q14999 1698 aa21.79■■□□□ 1.08
PKM-208ENST00000563275 JPH4Q96JJ6 628 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms