RNA–Protein interactions for RNA: ENST00000563109.1

RAB40C-207, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 710 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-207ENST00000563109 NISCHQ9Y2I1 1504 aa44.77■■■■■ 4.76
RAB40C-207ENST00000563109 CCDC180Q9P1Z9 1646 aa39.69■■■■□ 3.94
RAB40C-207ENST00000563109 ABCC9O60706 1549 aa38.26■■■■□ 3.72
RAB40C-207ENST00000563109 ZCCHC6Q5VYS8 1495 aaKnown RBP37.42■■■■□ 3.58
RAB40C-207ENST00000563109 DCAF8L2P0C7V8 631 aa37.17■■■■□ 3.54
RAB40C-207ENST00000563109 NACADO15069 1562 aa37.15■■■■□ 3.54
RAB40C-207ENST00000563109 RB1CC1Q8TDY2 1594 aa37.09■■■■□ 3.53
RAB40C-207ENST00000563109 DCAF1Q9Y4B6 1507 aa37.09■■■■□ 3.53
RAB40C-207ENST00000563109 MYO15BQ96JP2 1530 aa37.05■■■■□ 3.52
RAB40C-207ENST00000563109 UNC13AQ9UPW8 1703 aa36.27■■■■□ 3.4
RAB40C-207ENST00000563109 SCRIBQ14160 1630 aa36.23■■■■□ 3.39
RAB40C-207ENST00000563109 BICRAQ9NZM4 1560 aa35.87■■■■□ 3.33
RAB40C-207ENST00000563109 PABPN1Q86U42 306 aaKnown RBP eCLIP35.77■■■■□ 3.32
RAB40C-207ENST00000563109 SHROOM4Q9ULL8 1493 aa35.65■■■■□ 3.3
RAB40C-207ENST00000563109 EIF4G1Q04637 1599 aaKnown RBP34.92■■■■□ 3.18
RAB40C-207ENST00000563109 CECR2Q9BXF3 1484 aa34.78■■■■□ 3.16
RAB40C-207ENST00000563109 BAZ1AQ9NRL2 1556 aaPredicted RBP34.72■■■■□ 3.15
RAB40C-207ENST00000563109 SMARCA4P51532 1647 aa34.69■■■■□ 3.14
RAB40C-207ENST00000563109 CC2D2AQ9P2K1 1620 aa34.66■■■■□ 3.14
RAB40C-207ENST00000563109 DNAJC5BQ9UF47 199 aa34.5■■■■□ 3.11
RAB40C-207ENST00000563109 MROH2BQ7Z745 1585 aa34.49■■■■□ 3.11
RAB40C-207ENST00000563109 SMARCA2P51531 1590 aa34.36■■■■□ 3.09
RAB40C-207ENST00000563109 PEG3Q9GZU2 1588 aa34.31■■■■□ 3.08
RAB40C-207ENST00000563109 ATAD2BQ9ULI0 1458 aa34.3■■■■□ 3.08
RAB40C-207ENST00000563109 RSF1Q96T23 1441 aaPredicted RBP34.26■■■■□ 3.07
RAB40C-207ENST00000563109 NCAPD3P42695 1498 aa34.2■■■■□ 3.06
RAB40C-207ENST00000563109 WIZO95785 1651 aa34.19■■■■□ 3.06
RAB40C-207ENST00000563109 HMGXB3Q12766 1538 aa34.15■■■■□ 3.06
RAB40C-207ENST00000563109 BAZ1BQ9UIG0 1483 aaKnown RBP34.11■■■■□ 3.05
RAB40C-207ENST00000563109 TOP2AP11388 1531 aaKnown RBP33.89■■■■□ 3.02
RAB40C-207ENST00000563109 SUPT5HO00267 1087 aaKnown RBP33.77■■■■□ 3
RAB40C-207ENST00000563109 CCDC88BA6NC98 1476 aa33.42■■■□□ 2.94
RAB40C-207ENST00000563109 LAMC3Q9Y6N6 1575 aa33.3■■■□□ 2.92
RAB40C-207ENST00000563109 CADPSQ9ULU8 1353 aa33.23■■■□□ 2.91
RAB40C-207ENST00000563109 NESP48681 1621 aa33.23■■■□□ 2.91
RAB40C-207ENST00000563109 CFTRP13569 1480 aa33.15■■■□□ 2.9
RAB40C-207ENST00000563109 PRDM2Q13029 1718 aa33.11■■■□□ 2.89
RAB40C-207ENST00000563109 PDS5BQ9NTI5 1447 aa33.02■■■□□ 2.88
RAB40C-207ENST00000563109 ERCC6Q03468 1493 aa32.99■■■□□ 2.87
RAB40C-207ENST00000563109 KIF21AQ7Z4S6 1674 aa32.94■■■□□ 2.86
RAB40C-207ENST00000563109 FANCD2Q9BXW9 1451 aa32.89■■■□□ 2.86
RAB40C-207ENST00000563109 CEP164Q9UPV0 1460 aa32.84■■■□□ 2.85
RAB40C-207ENST00000563109 THOC2Q8NI27 1593 aaKnown RBP32.69■■■□□ 2.82
RAB40C-207ENST00000563109 MRC2Q9UBG0 1479 aa32.67■■■□□ 2.82
RAB40C-207ENST00000563109 WDR62O43379 1518 aa32.55■■■□□ 2.8
RAB40C-207ENST00000563109 URB2Q14146 1524 aaKnown RBP32.51■■■□□ 2.79
RAB40C-207ENST00000563109 ABCC8Q09428 1581 aa32.48■■■□□ 2.79
RAB40C-207ENST00000563109 DNMBPQ6XZF7 1577 aa32.47■■■□□ 2.79
RAB40C-207ENST00000563109 CUX2O14529 1486 aa32.45■■■□□ 2.79
RAB40C-207ENST00000563109 TOPBP1Q92547 1522 aa32.42■■■□□ 2.78
RAB40C-207ENST00000563109 CUX1P39880 1505 aa32.36■■■□□ 2.77
RAB40C-207ENST00000563109 WRNQ14191 1432 aaPredicted RBP eCLIP32.34■■■□□ 2.77
RAB40C-207ENST00000563109 BIVM-ERCC5R4GMW8 1640 aa32.26■■■□□ 2.76
RAB40C-207ENST00000563109 SYNJ1O43426 1573 aa32.25■■■□□ 2.75
RAB40C-207ENST00000563109 TOP2BQ02880 1626 aa32.25■■■□□ 2.75
RAB40C-207ENST00000563109 FGD5Q6ZNL6 1462 aa32.18■■■□□ 2.74
RAB40C-207ENST00000563109 POLA1P09884 1462 aaPredicted RBP32.17■■■□□ 2.74
RAB40C-207ENST00000563109 IFT140Q96RY7 1462 aa32.11■■■□□ 2.73
RAB40C-207ENST00000563109 TARBP1Q13395 1621 aaKnown RBP32.04■■■□□ 2.72
RAB40C-207ENST00000563109 SOGA1O94964 1423 aa32.03■■■□□ 2.72
RAB40C-207ENST00000563109 RAD54L2Q9Y4B4 1467 aa31.99■■■□□ 2.71
RAB40C-207ENST00000563109 WDR97A6NE52 1622 aa31.95■■■□□ 2.71
RAB40C-207ENST00000563109 TRIM41Q8WV44 630 aa31.89■■■□□ 2.7
RAB40C-207ENST00000563109 ABCA10Q8WWZ4 1543 aa31.89■■■□□ 2.7
RAB40C-207ENST00000563109 EIF4G3O43432 1585 aaKnown RBP31.86■■■□□ 2.69
RAB40C-207ENST00000563109 ZNF608Q9ULD9 1512 aaPredicted RBP31.86■■■□□ 2.69
RAB40C-207ENST00000563109 CHIC1Q5VXU3 224 aa31.77■■■□□ 2.68
RAB40C-207ENST00000563109 ABCA5Q8WWZ7 1642 aa31.76■■■□□ 2.67
RAB40C-207ENST00000563109 TDRD9Q8NDG6 1382 aaKnown RBP31.76■■■□□ 2.67
RAB40C-207ENST00000563109 AQRO60306 1485 aaKnown RBP eCLIP31.74■■■□□ 2.672e-6■■■■■ 26.9
RAB40C-207ENST00000563109 GAPVD1Q14C86 1478 aa31.7■■■□□ 2.66
RAB40C-207ENST00000563109 PBRM1Q86U86 1689 aa31.7■■■□□ 2.66
RAB40C-207ENST00000563109 KIF27Q86VH2 1401 aa31.64■■■□□ 2.66
RAB40C-207ENST00000563109 GRIN2BQ13224 1484 aa31.64■■■□□ 2.66
RAB40C-207ENST00000563109 ERICH3Q5RHP9 1530 aa31.54■■■□□ 2.64
RAB40C-207ENST00000563109 SNAPC4Q5SXM2 1469 aa31.53■■■□□ 2.64
RAB40C-207ENST00000563109 MAGI1Q96QZ7 1491 aaPredicted RBP31.52■■■□□ 2.64
RAB40C-207ENST00000563109 ADAMTS12P58397 1594 aa31.43■■■□□ 2.62
RAB40C-207ENST00000563109 RUSC2Q8N2Y8 1516 aa31.42■■■□□ 2.62
RAB40C-207ENST00000563109 CUL7Q14999 1698 aa31.41■■■□□ 2.62
RAB40C-207ENST00000563109 EEA1Q15075 1411 aa31.4■■■□□ 2.62
RAB40C-207ENST00000563109 CHD1O14646 1710 aa31.38■■■□□ 2.61
RAB40C-207ENST00000563109 SYNJ2O15056 1496 aa31.37■■■□□ 2.61
RAB40C-207ENST00000563109 IGF1RP08069 1367 aa31.36■■■□□ 2.61
RAB40C-207ENST00000563109 FHAD1B1AJZ9 1412 aa31.35■■■□□ 2.61
RAB40C-207ENST00000563109 FBLN2P98095 1184 aa31.29■■■□□ 2.6
RAB40C-207ENST00000563109 CHMP7Q8WUX9 453 aaPredicted RBP31.28■■■□□ 2.6
RAB40C-207ENST00000563109 GRIN2AQ12879 1464 aa31.23■■■□□ 2.59
RAB40C-207ENST00000563109 CARMIL1Q5VZK9 1371 aa31.23■■■□□ 2.59
RAB40C-207ENST00000563109 FAM9AQ8IZU1 332 aaPredicted RBP31.2■■■□□ 2.59
RAB40C-207ENST00000563109 CSRNP3Q8WYN3 585 aa31.18■■■□□ 2.58
RAB40C-207ENST00000563109 RAPGEF2Q9Y4G8 1499 aa31.14■■■□□ 2.57
RAB40C-207ENST00000563109 OSCARQ8IYS5 282 aa31.12■■■□□ 2.57
RAB40C-207ENST00000563109 PRXQ9BXM0 1461 aa31.11■■■□□ 2.57
RAB40C-207ENST00000563109 CEP170Q5SW79 1584 aa31.05■■■□□ 2.56
RAB40C-207ENST00000563109 KIF21BO75037 1637 aa31.05■■■□□ 2.56
RAB40C-207ENST00000563109 NUP160Q12769 1436 aa31.04■■■□□ 2.56
RAB40C-207ENST00000563109 CLASP1Q7Z460 1538 aa30.99■■■□□ 2.55
RAB40C-207ENST00000563109 CTTNBP2Q8WZ74 1663 aa30.92■■■□□ 2.54
RAB40C-207ENST00000563109 GOLGA3Q08378 1498 aa30.89■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms