RNA–Protein interactions for RNA: ENST00000562998.1

CDH11-206, Transcript of cadherin 11, humanhuman

TSL 4

Gene CDH11, Length 568 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11-206ENST00000562998 NISCHQ9Y2I1 1504 aa45.72■■■■■ 4.91
CDH11-206ENST00000562998 CCDC180Q9P1Z9 1646 aa40.66■■■■■ 4.1
CDH11-206ENST00000562998 ABCC9O60706 1549 aa39.75■■■■□ 3.95
CDH11-206ENST00000562998 RB1CC1Q8TDY2 1594 aa38.25■■■■□ 3.71
CDH11-206ENST00000562998 NACADO15069 1562 aa38.23■■■■□ 3.71
CDH11-206ENST00000562998 ZCCHC6Q5VYS8 1495 aaKnown RBP38.09■■■■□ 3.69
CDH11-206ENST00000562998 MYO15BQ96JP2 1530 aa38.07■■■■□ 3.69
CDH11-206ENST00000562998 DCAF8L2P0C7V8 631 aa38.01■■■■□ 3.68
CDH11-206ENST00000562998 DCAF1Q9Y4B6 1507 aa37.88■■■■□ 3.65
CDH11-206ENST00000562998 UNC13AQ9UPW8 1703 aa37.43■■■■□ 3.58
CDH11-206ENST00000562998 BICRAQ9NZM4 1560 aa37.18■■■■□ 3.54
CDH11-206ENST00000562998 PABPN1Q86U42 306 aaKnown RBP eCLIP37.11■■■■□ 3.53
CDH11-206ENST00000562998 SCRIBQ14160 1630 aa37.02■■■■□ 3.52
CDH11-206ENST00000562998 SHROOM4Q9ULL8 1493 aa36.77■■■■□ 3.48
CDH11-206ENST00000562998 DNAJC5BQ9UF47 199 aa36.6■■■■□ 3.45
CDH11-206ENST00000562998 EIF4G1Q04637 1599 aaKnown RBP36.15■■■■□ 3.38
CDH11-206ENST00000562998 CC2D2AQ9P2K1 1620 aa35.99■■■■□ 3.35
CDH11-206ENST00000562998 CECR2Q9BXF3 1484 aa35.73■■■■□ 3.31
CDH11-206ENST00000562998 SMARCA4P51532 1647 aa35.46■■■■□ 3.27
CDH11-206ENST00000562998 BAZ1AQ9NRL2 1556 aaPredicted RBP35.41■■■■□ 3.26
CDH11-206ENST00000562998 NCAPD3P42695 1498 aa35.32■■■■□ 3.24
CDH11-206ENST00000562998 ATAD2BQ9ULI0 1458 aa35.29■■■■□ 3.24
CDH11-206ENST00000562998 MROH2BQ7Z745 1585 aa35.23■■■■□ 3.23
CDH11-206ENST00000562998 SMARCA2P51531 1590 aa35.22■■■■□ 3.23
CDH11-206ENST00000562998 PEG3Q9GZU2 1588 aa35.19■■■■□ 3.22
CDH11-206ENST00000562998 HMGXB3Q12766 1538 aa35.11■■■■□ 3.21
CDH11-206ENST00000562998 BAZ1BQ9UIG0 1483 aaKnown RBP34.95■■■■□ 3.19
CDH11-206ENST00000562998 RSF1Q96T23 1441 aaPredicted RBP34.82■■■■□ 3.17
CDH11-206ENST00000562998 WIZO95785 1651 aa34.82■■■■□ 3.16
CDH11-206ENST00000562998 TOP2AP11388 1531 aaKnown RBP34.45■■■■□ 3.11
CDH11-206ENST00000562998 NESP48681 1621 aa34.42■■■■□ 3.1
CDH11-206ENST00000562998 LAMC3Q9Y6N6 1575 aa34.35■■■■□ 3.09
CDH11-206ENST00000562998 CADPSQ9ULU8 1353 aa34.23■■■■□ 3.07
CDH11-206ENST00000562998 ERCC6Q03468 1493 aa34.2■■■■□ 3.07
CDH11-206ENST00000562998 PDS5BQ9NTI5 1447 aa34.08■■■■□ 3.05
CDH11-206ENST00000562998 CCDC88BA6NC98 1476 aa34.06■■■■□ 3.04
CDH11-206ENST00000562998 CFTRP13569 1480 aa34.06■■■■□ 3.04
CDH11-206ENST00000562998 KIF21AQ7Z4S6 1674 aa34■■■■□ 3.03
CDH11-206ENST00000562998 CUX2O14529 1486 aa33.96■■■■□ 3.03
CDH11-206ENST00000562998 THOC2Q8NI27 1593 aaKnown RBP33.94■■■■□ 3.02
CDH11-206ENST00000562998 FANCD2Q9BXW9 1451 aa33.82■■■■□ 3.01
CDH11-206ENST00000562998 CEP164Q9UPV0 1460 aa33.76■■■■□ 3
CDH11-206ENST00000562998 PRDM2Q13029 1718 aa33.76■■■■□ 3
CDH11-206ENST00000562998 MRC2Q9UBG0 1479 aa33.75■■■□□ 2.99
CDH11-206ENST00000562998 SUPT5HO00267 1087 aaKnown RBP33.74■■■□□ 2.99
CDH11-206ENST00000562998 WDR62O43379 1518 aa33.68■■■□□ 2.98
CDH11-206ENST00000562998 URB2Q14146 1524 aaKnown RBP33.52■■■□□ 2.96
CDH11-206ENST00000562998 TOPBP1Q92547 1522 aa33.3■■■□□ 2.92
CDH11-206ENST00000562998 ABCC8Q09428 1581 aa33.29■■■□□ 2.92
CDH11-206ENST00000562998 DNMBPQ6XZF7 1577 aa33.25■■■□□ 2.91
CDH11-206ENST00000562998 IFT140Q96RY7 1462 aa33.08■■■□□ 2.89
CDH11-206ENST00000562998 CUX1P39880 1505 aa33.04■■■□□ 2.88
CDH11-206ENST00000562998 POLA1P09884 1462 aaPredicted RBP33.01■■■□□ 2.88
CDH11-206ENST00000562998 TARBP1Q13395 1621 aaKnown RBP32.98■■■□□ 2.87
CDH11-206ENST00000562998 DNAJC5Q9H3Z4 198 aa32.97■■■□□ 2.87
CDH11-206ENST00000562998 ZNF608Q9ULD9 1512 aaPredicted RBP32.95■■■□□ 2.87
CDH11-206ENST00000562998 FGD5Q6ZNL6 1462 aa32.91■■■□□ 2.86
CDH11-206ENST00000562998 RAD54L2Q9Y4B4 1467 aa32.85■■■□□ 2.85
CDH11-206ENST00000562998 SOGA1O94964 1423 aa32.85■■■□□ 2.85
CDH11-206ENST00000562998 EIF4G3O43432 1585 aaKnown RBP32.8■■■□□ 2.84
CDH11-206ENST00000562998 WRNQ14191 1432 aaPredicted RBP eCLIP32.78■■■□□ 2.84
CDH11-206ENST00000562998 BIVM-ERCC5R4GMW8 1640 aa32.76■■■□□ 2.83
CDH11-206ENST00000562998 TOP2BQ02880 1626 aa32.75■■■□□ 2.83
CDH11-206ENST00000562998 AQRO60306 1485 aaKnown RBP eCLIP32.74■■■□□ 2.83
CDH11-206ENST00000562998 SYNJ1O43426 1573 aa32.73■■■□□ 2.83
CDH11-206ENST00000562998 WDR97A6NE52 1622 aa32.7■■■□□ 2.83
CDH11-206ENST00000562998 TDRD9Q8NDG6 1382 aaKnown RBP32.66■■■□□ 2.82
CDH11-206ENST00000562998 ABCA10Q8WWZ4 1543 aa32.62■■■□□ 2.81
CDH11-206ENST00000562998 OSCARQ8IYS5 282 aa32.5■■■□□ 2.79
CDH11-206ENST00000562998 ABCA5Q8WWZ7 1642 aa32.5■■■□□ 2.79
CDH11-206ENST00000562998 GRIN2BQ13224 1484 aa32.48■■■□□ 2.79
CDH11-206ENST00000562998 GAPVD1Q14C86 1478 aa32.47■■■□□ 2.79
CDH11-206ENST00000562998 SNAPC4Q5SXM2 1469 aa32.42■■■□□ 2.78
CDH11-206ENST00000562998 MAGI1Q96QZ7 1491 aaPredicted RBP32.42■■■□□ 2.78
CDH11-206ENST00000562998 PBRM1Q86U86 1689 aa32.4■■■□□ 2.78
CDH11-206ENST00000562998 CHD1O14646 1710 aa32.38■■■□□ 2.77
CDH11-206ENST00000562998 SYNJ2O15056 1496 aa32.29■■■□□ 2.76
CDH11-206ENST00000562998 FBLN2P98095 1184 aa32.23■■■□□ 2.75
CDH11-206ENST00000562998 ERICH3Q5RHP9 1530 aa32.22■■■□□ 2.75
CDH11-206ENST00000562998 CHMP7Q8WUX9 453 aaPredicted RBP32.19■■■□□ 2.74
CDH11-206ENST00000562998 ADAMTS12P58397 1594 aa32.17■■■□□ 2.74
CDH11-206ENST00000562998 FHAD1B1AJZ9 1412 aa32.1■■■□□ 2.73
CDH11-206ENST00000562998 CLASP1Q7Z460 1538 aa32.1■■■□□ 2.73
CDH11-206ENST00000562998 KIF27Q86VH2 1401 aa32.09■■■□□ 2.73
CDH11-206ENST00000562998 GRIN2AQ12879 1464 aa32.07■■■□□ 2.72
CDH11-206ENST00000562998 IGF1RP08069 1367 aa32.02■■■□□ 2.72
CDH11-206ENST00000562998 RIMBP3CA6NJZ7 1639 aa32.01■■■□□ 2.72
CDH11-206ENST00000562998 RIMBP3BA6NNM3 1639 aa32.01■■■□□ 2.72
CDH11-206ENST00000562998 RIMBP3Q9UFD9 1639 aa32.01■■■□□ 2.72
CDH11-206ENST00000562998 ARHGEF11O15085 1522 aa32■■■□□ 2.71
CDH11-206ENST00000562998 NUP160Q12769 1436 aa31.97■■■□□ 2.71
CDH11-206ENST00000562998 CEP170Q5SW79 1584 aa31.93■■■□□ 2.7
CDH11-206ENST00000562998 TRIM41Q8WV44 630 aa31.9■■■□□ 2.7
CDH11-206ENST00000562998 CUL7Q14999 1698 aa31.89■■■□□ 2.7
CDH11-206ENST00000562998 RUSC2Q8N2Y8 1516 aa31.82■■■□□ 2.68
CDH11-206ENST00000562998 CARMIL1Q5VZK9 1371 aa31.78■■■□□ 2.68
CDH11-206ENST00000562998 ARAP1Q96P48 1450 aa31.76■■■□□ 2.67
CDH11-206ENST00000562998 SHROOM2Q13796 1616 aa31.75■■■□□ 2.67
CDH11-206ENST00000562998 CYB5RLQ6IPT4 315 aa31.64■■■□□ 2.66
CDH11-206ENST00000562998 KIAA0586Q9BVV6 1533 aa31.63■■■□□ 2.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms