RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 NISCHQ9Y2I1 1504 aa39.32■■■■□ 3.89
VPS4A-202ENST00000562754 CCDC180Q9P1Z9 1646 aa34.7■■■■□ 3.15
VPS4A-202ENST00000562754 ABCC9O60706 1549 aa33.32■■■□□ 2.92
VPS4A-202ENST00000562754 ZCCHC6Q5VYS8 1495 aaKnown RBP32.93■■■□□ 2.86
VPS4A-202ENST00000562754 DCAF1Q9Y4B6 1507 aa32.56■■■□□ 2.8
VPS4A-202ENST00000562754 DCAF8L2P0C7V8 631 aa32.46■■■□□ 2.79
VPS4A-202ENST00000562754 MYO15BQ96JP2 1530 aa32.43■■■□□ 2.78
VPS4A-202ENST00000562754 NACADO15069 1562 aa32.42■■■□□ 2.78
VPS4A-202ENST00000562754 RB1CC1Q8TDY2 1594 aa32.31■■■□□ 2.76
VPS4A-202ENST00000562754 SCRIBQ14160 1630 aa31.74■■■□□ 2.67
VPS4A-202ENST00000562754 UNC13AQ9UPW8 1703 aa31.69■■■□□ 2.66
VPS4A-202ENST00000562754 SHROOM4Q9ULL8 1493 aa31.46■■■□□ 2.63
VPS4A-202ENST00000562754 BICRAQ9NZM4 1560 aa31.39■■■□□ 2.61
VPS4A-202ENST00000562754 PABPN1Q86U42 306 aaKnown RBP eCLIP31.2■■■□□ 2.59
VPS4A-202ENST00000562754 CECR2Q9BXF3 1484 aa30.58■■■□□ 2.49
VPS4A-202ENST00000562754 EIF4G1Q04637 1599 aaKnown RBP30.46■■■□□ 2.47
VPS4A-202ENST00000562754 BAZ1AQ9NRL2 1556 aaPredicted RBP30.42■■■□□ 2.46
VPS4A-202ENST00000562754 SMARCA4P51532 1647 aa30.41■■■□□ 2.46
VPS4A-202ENST00000562754 MROH2BQ7Z745 1585 aa30.35■■■□□ 2.45
VPS4A-202ENST00000562754 RSF1Q96T23 1441 aaPredicted RBP30.2■■■□□ 2.42
VPS4A-202ENST00000562754 CC2D2AQ9P2K1 1620 aa30.18■■■□□ 2.42
VPS4A-202ENST00000562754 PEG3Q9GZU2 1588 aa30.08■■■□□ 2.41
VPS4A-202ENST00000562754 WIZO95785 1651 aa30.07■■■□□ 2.4
VPS4A-202ENST00000562754 ATAD2BQ9ULI0 1458 aa30.04■■■□□ 2.4
VPS4A-202ENST00000562754 SMARCA2P51531 1590 aa30.03■■■□□ 2.4
VPS4A-202ENST00000562754 DNAJC5BQ9UF47 199 aa29.98■■■□□ 2.39
VPS4A-202ENST00000562754 NCAPD3P42695 1498 aa29.9■■■□□ 2.38
VPS4A-202ENST00000562754 SUPT5HO00267 1087 aaKnown RBP29.86■■■□□ 2.37
VPS4A-202ENST00000562754 HMGXB3Q12766 1538 aa29.86■■■□□ 2.37
VPS4A-202ENST00000562754 BAZ1BQ9UIG0 1483 aaKnown RBP29.81■■■□□ 2.36
VPS4A-202ENST00000562754 TOP2AP11388 1531 aaKnown RBP29.76■■■□□ 2.36
VPS4A-202ENST00000562754 CCDC88BA6NC98 1476 aa29.38■■■□□ 2.29
VPS4A-202ENST00000562754 NESP48681 1621 aa29.05■■■□□ 2.24
VPS4A-202ENST00000562754 CFTRP13569 1480 aa29.04■■■□□ 2.24
VPS4A-202ENST00000562754 CADPSQ9ULU8 1353 aa29.04■■■□□ 2.24
VPS4A-202ENST00000562754 LAMC3Q9Y6N6 1575 aa29.02■■■□□ 2.24
VPS4A-202ENST00000562754 PRDM2Q13029 1718 aa28.96■■■□□ 2.23
VPS4A-202ENST00000562754 KIF21AQ7Z4S6 1674 aa28.76■■■□□ 2.19
VPS4A-202ENST00000562754 FANCD2Q9BXW9 1451 aa28.75■■■□□ 2.19
VPS4A-202ENST00000562754 PDS5BQ9NTI5 1447 aa28.75■■■□□ 2.19
VPS4A-202ENST00000562754 CEP164Q9UPV0 1460 aa28.65■■■□□ 2.18
VPS4A-202ENST00000562754 ERCC6Q03468 1493 aa28.62■■■□□ 2.17
VPS4A-202ENST00000562754 ABCC8Q09428 1581 aa28.56■■■□□ 2.16
VPS4A-202ENST00000562754 THOC2Q8NI27 1593 aaKnown RBP28.5■■■□□ 2.15
VPS4A-202ENST00000562754 MRC2Q9UBG0 1479 aa28.48■■■□□ 2.15
VPS4A-202ENST00000562754 URB2Q14146 1524 aaKnown RBP28.47■■■□□ 2.15
VPS4A-202ENST00000562754 WRNQ14191 1432 aaPredicted RBP eCLIP28.43■■■□□ 2.14
VPS4A-202ENST00000562754 CUX1P39880 1505 aa28.43■■■□□ 2.14
VPS4A-202ENST00000562754 DNMBPQ6XZF7 1577 aa28.41■■■□□ 2.14
VPS4A-202ENST00000562754 SYNJ1O43426 1573 aa28.41■■■□□ 2.14
VPS4A-202ENST00000562754 WDR62O43379 1518 aa28.39■■■□□ 2.14
VPS4A-202ENST00000562754 TOPBP1Q92547 1522 aa28.38■■■□□ 2.13
VPS4A-202ENST00000562754 BIVM-ERCC5R4GMW8 1640 aa28.36■■■□□ 2.13
VPS4A-202ENST00000562754 TOP2BQ02880 1626 aa28.35■■■□□ 2.13
VPS4A-202ENST00000562754 CHIC1Q5VXU3 224 aa28.26■■■□□ 2.11
VPS4A-202ENST00000562754 FGD5Q6ZNL6 1462 aa28.21■■■□□ 2.11
VPS4A-202ENST00000562754 POLA1P09884 1462 aaPredicted RBP28.19■■■□□ 2.1
VPS4A-202ENST00000562754 TRIM41Q8WV44 630 aa28.13■■■□□ 2.09
VPS4A-202ENST00000562754 CUX2O14529 1486 aa28.13■■■□□ 2.09
VPS4A-202ENST00000562754 RAD54L2Q9Y4B4 1467 aa28.06■■■□□ 2.08
VPS4A-202ENST00000562754 TARBP1Q13395 1621 aaKnown RBP28.05■■■□□ 2.08
VPS4A-202ENST00000562754 WDR97A6NE52 1622 aa28.03■■■□□ 2.08
VPS4A-202ENST00000562754 SOGA1O94964 1423 aa28.02■■■□□ 2.08
VPS4A-202ENST00000562754 IFT140Q96RY7 1462 aa28.01■■■□□ 2.07
VPS4A-202ENST00000562754 ABCA10Q8WWZ4 1543 aa27.96■■■□□ 2.07
VPS4A-202ENST00000562754 ZNF608Q9ULD9 1512 aaPredicted RBP27.87■■■□□ 2.05
VPS4A-202ENST00000562754 ABCA5Q8WWZ7 1642 aa27.84■■■□□ 2.05
VPS4A-202ENST00000562754 EIF4G3O43432 1585 aaKnown RBP27.82■■■□□ 2.04
VPS4A-202ENST00000562754 TDRD9Q8NDG6 1382 aaKnown RBP27.81■■■□□ 2.04
VPS4A-202ENST00000562754 RUSC2Q8N2Y8 1516 aa27.79■■■□□ 2.04
VPS4A-202ENST00000562754 AQRO60306 1485 aaKnown RBP eCLIP27.76■■■□□ 2.041e-6■■□□□ 11.4
VPS4A-202ENST00000562754 KIF27Q86VH2 1401 aa27.76■■■□□ 2.04
VPS4A-202ENST00000562754 GAPVD1Q14C86 1478 aa27.74■■■□□ 2.03
VPS4A-202ENST00000562754 PBRM1Q86U86 1689 aa27.72■■■□□ 2.03
VPS4A-202ENST00000562754 EEA1Q15075 1411 aa27.66■■■□□ 2.02
VPS4A-202ENST00000562754 GRIN2BQ13224 1484 aa27.64■■■□□ 2.02
VPS4A-202ENST00000562754 ERICH3Q5RHP9 1530 aa27.62■■■□□ 2.01
VPS4A-202ENST00000562754 FAM9AQ8IZU1 332 aaPredicted RBP27.58■■■□□ 2.01
VPS4A-202ENST00000562754 IGF1RP08069 1367 aa27.58■■■□□ 2.01
VPS4A-202ENST00000562754 SNAPC4Q5SXM2 1469 aa27.55■■■□□ 2
VPS4A-202ENST00000562754 ADAMTS12P58397 1594 aa27.53■■■□□ 2
VPS4A-202ENST00000562754 CUL7Q14999 1698 aa27.52■■■□□ 2
VPS4A-202ENST00000562754 MAGI1Q96QZ7 1491 aaPredicted RBP27.51■■□□□ 1.99
VPS4A-202ENST00000562754 CSRNP3Q8WYN3 585 aa27.49■■□□□ 1.99
VPS4A-202ENST00000562754 PRXQ9BXM0 1461 aa27.44■■□□□ 1.98
VPS4A-202ENST00000562754 FHAD1B1AJZ9 1412 aa27.42■■□□□ 1.98
VPS4A-202ENST00000562754 CARMIL1Q5VZK9 1371 aa27.42■■□□□ 1.98
VPS4A-202ENST00000562754 KIF21BO75037 1637 aa27.4■■□□□ 1.98
VPS4A-202ENST00000562754 SYNJ2O15056 1496 aa27.39■■□□□ 1.98
VPS4A-202ENST00000562754 CHD1O14646 1710 aa27.36■■□□□ 1.97
VPS4A-202ENST00000562754 RAPGEF2Q9Y4G8 1499 aa27.35■■□□□ 1.97
VPS4A-202ENST00000562754 GRIN2AQ12879 1464 aa27.32■■□□□ 1.96
VPS4A-202ENST00000562754 CHMP7Q8WUX9 453 aaPredicted RBP27.25■■□□□ 1.95
VPS4A-202ENST00000562754 GOLGA3Q08378 1498 aa27.25■■□□□ 1.95
VPS4A-202ENST00000562754 FBLN2P98095 1184 aa27.23■■□□□ 1.95
VPS4A-202ENST00000562754 CEP170Q5SW79 1584 aa27.19■■□□□ 1.94
VPS4A-202ENST00000562754 EHMT2Q96KQ7 1210 aa27.19■■□□□ 1.94
VPS4A-202ENST00000562754 NUP160Q12769 1436 aa27.16■■□□□ 1.94
VPS4A-202ENST00000562754 CTTNBP2Q8WZ74 1663 aa27.14■■□□□ 1.93
VPS4A-202ENST00000562754 LOC105371045A0A1W2PR82 267 aa27.1■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 132.4 ms