RNA–Protein interactions for RNA: ENST00000562477.1

TMEM249-202, Transcript of transmembrane protein 249, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TMEM249, Length 725 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM249-202ENST00000562477 NISCHQ9Y2I1 1504 aa47.33■■■■■ 5.17
TMEM249-202ENST00000562477 CCDC180Q9P1Z9 1646 aa42.05■■■■■ 4.32
TMEM249-202ENST00000562477 ABCC9O60706 1549 aa41.49■■■■■ 4.23
TMEM249-202ENST00000562477 DCAF8L2P0C7V8 631 aa39.71■■■■□ 3.95
TMEM249-202ENST00000562477 RB1CC1Q8TDY2 1594 aa39.71■■■■□ 3.95
TMEM249-202ENST00000562477 NACADO15069 1562 aa39.61■■■■□ 3.93
TMEM249-202ENST00000562477 ZCCHC6Q5VYS8 1495 aaKnown RBP39.39■■■■□ 3.9
TMEM249-202ENST00000562477 MYO15BQ96JP2 1530 aa39.28■■■■□ 3.88
TMEM249-202ENST00000562477 DCAF1Q9Y4B6 1507 aa39.07■■■■□ 3.84
TMEM249-202ENST00000562477 UNC13AQ9UPW8 1703 aa38.82■■■■□ 3.8
TMEM249-202ENST00000562477 PABPN1Q86U42 306 aaKnown RBP eCLIP38.8■■■■□ 3.8
TMEM249-202ENST00000562477 BICRAQ9NZM4 1560 aa38.59■■■■□ 3.77
TMEM249-202ENST00000562477 SCRIBQ14160 1630 aa38.49■■■■□ 3.75
TMEM249-202ENST00000562477 DNAJC5BQ9UF47 199 aa38.34■■■■□ 3.73
TMEM249-202ENST00000562477 SHROOM4Q9ULL8 1493 aa38.03■■■■□ 3.68
TMEM249-202ENST00000562477 EIF4G1Q04637 1599 aaKnown RBP37.56■■■■□ 3.6
TMEM249-202ENST00000562477 CC2D2AQ9P2K1 1620 aa37.47■■■■□ 3.59
TMEM249-202ENST00000562477 CECR2Q9BXF3 1484 aa37.26■■■■□ 3.56
TMEM249-202ENST00000562477 SMARCA4P51532 1647 aa36.74■■■■□ 3.47
TMEM249-202ENST00000562477 BAZ1AQ9NRL2 1556 aaPredicted RBP36.65■■■■□ 3.46
TMEM249-202ENST00000562477 ATAD2BQ9ULI0 1458 aa36.63■■■■□ 3.45
TMEM249-202ENST00000562477 NCAPD3P42695 1498 aa36.6■■■■□ 3.45
TMEM249-202ENST00000562477 MROH2BQ7Z745 1585 aa36.53■■■■□ 3.44
TMEM249-202ENST00000562477 SMARCA2P51531 1590 aa36.5■■■■□ 3.43
TMEM249-202ENST00000562477 HMGXB3Q12766 1538 aa36.37■■■■□ 3.41
TMEM249-202ENST00000562477 PEG3Q9GZU2 1588 aa36.35■■■■□ 3.41
TMEM249-202ENST00000562477 BAZ1BQ9UIG0 1483 aaKnown RBP36.3■■■■□ 3.4
TMEM249-202ENST00000562477 WIZO95785 1651 aa36.1■■■■□ 3.37
TMEM249-202ENST00000562477 RSF1Q96T23 1441 aaPredicted RBP36.04■■■■□ 3.36
TMEM249-202ENST00000562477 NESP48681 1621 aa35.87■■■■□ 3.33
TMEM249-202ENST00000562477 ERCC6Q03468 1493 aa35.73■■■■□ 3.31
TMEM249-202ENST00000562477 TOP2AP11388 1531 aaKnown RBP35.67■■■■□ 3.3
TMEM249-202ENST00000562477 LAMC3Q9Y6N6 1575 aa35.61■■■■□ 3.29
TMEM249-202ENST00000562477 CADPSQ9ULU8 1353 aa35.55■■■■□ 3.28
TMEM249-202ENST00000562477 PDS5BQ9NTI5 1447 aa35.41■■■■□ 3.26
TMEM249-202ENST00000562477 CUX2O14529 1486 aa35.36■■■■□ 3.25
TMEM249-202ENST00000562477 KIF21AQ7Z4S6 1674 aa35.35■■■■□ 3.25
TMEM249-202ENST00000562477 CCDC88BA6NC98 1476 aa35.3■■■■□ 3.24
TMEM249-202ENST00000562477 THOC2Q8NI27 1593 aaKnown RBP35.29■■■■□ 3.24
TMEM249-202ENST00000562477 CFTRP13569 1480 aa35.29■■■■□ 3.24
TMEM249-202ENST00000562477 FANCD2Q9BXW9 1451 aa35.16■■■■□ 3.22
TMEM249-202ENST00000562477 MRC2Q9UBG0 1479 aa35.09■■■■□ 3.21
TMEM249-202ENST00000562477 CEP164Q9UPV0 1460 aa35.09■■■■□ 3.21
TMEM249-202ENST00000562477 SUPT5HO00267 1087 aaKnown RBP35.05■■■■□ 3.2
TMEM249-202ENST00000562477 WDR62O43379 1518 aa34.96■■■■□ 3.19
TMEM249-202ENST00000562477 PRDM2Q13029 1718 aa34.89■■■■□ 3.18
TMEM249-202ENST00000562477 URB2Q14146 1524 aaKnown RBP34.85■■■■□ 3.17
TMEM249-202ENST00000562477 TOPBP1Q92547 1522 aa34.57■■■■□ 3.12
TMEM249-202ENST00000562477 DNAJC5Q9H3Z4 198 aa34.56■■■■□ 3.12
TMEM249-202ENST00000562477 DNMBPQ6XZF7 1577 aa34.48■■■■□ 3.11
TMEM249-202ENST00000562477 ABCC8Q09428 1581 aa34.45■■■■□ 3.1
TMEM249-202ENST00000562477 IFT140Q96RY7 1462 aa34.36■■■■□ 3.09
TMEM249-202ENST00000562477 ZNF608Q9ULD9 1512 aaPredicted RBP34.31■■■■□ 3.08
TMEM249-202ENST00000562477 CUX1P39880 1505 aa34.27■■■■□ 3.08
TMEM249-202ENST00000562477 POLA1P09884 1462 aaPredicted RBP34.27■■■■□ 3.08
TMEM249-202ENST00000562477 RAD54L2Q9Y4B4 1467 aa34.18■■■■□ 3.06
TMEM249-202ENST00000562477 TARBP1Q13395 1621 aaKnown RBP34.18■■■■□ 3.06
TMEM249-202ENST00000562477 FGD5Q6ZNL6 1462 aa34.17■■■■□ 3.06
TMEM249-202ENST00000562477 SOGA1O94964 1423 aa34.13■■■■□ 3.05
TMEM249-202ENST00000562477 AQRO60306 1485 aaKnown RBP eCLIP34.09■■■■□ 3.05
TMEM249-202ENST00000562477 EIF4G3O43432 1585 aaKnown RBP34.09■■■■□ 3.05
TMEM249-202ENST00000562477 TDRD9Q8NDG6 1382 aaKnown RBP34.01■■■■□ 3.04
TMEM249-202ENST00000562477 WRNQ14191 1432 aaPredicted RBP eCLIP33.96■■■■□ 3.03
TMEM249-202ENST00000562477 OSCARQ8IYS5 282 aa33.91■■■■□ 3.02
TMEM249-202ENST00000562477 SYNJ1O43426 1573 aa33.9■■■■□ 3.02
TMEM249-202ENST00000562477 TOP2BQ02880 1626 aa33.86■■■■□ 3.01
TMEM249-202ENST00000562477 BIVM-ERCC5R4GMW8 1640 aa33.83■■■■□ 3.01
TMEM249-202ENST00000562477 WDR97A6NE52 1622 aa33.82■■■■□ 3.01
TMEM249-202ENST00000562477 ABCA10Q8WWZ4 1543 aa33.79■■■■□ 3
TMEM249-202ENST00000562477 SNAPC4Q5SXM2 1469 aa33.75■■■□□ 2.99
TMEM249-202ENST00000562477 GRIN2BQ13224 1484 aa33.72■■■□□ 2.99
TMEM249-202ENST00000562477 FBLN2P98095 1184 aa33.72■■■□□ 2.99
TMEM249-202ENST00000562477 GAPVD1Q14C86 1478 aa33.71■■■□□ 2.99
TMEM249-202ENST00000562477 CHD1O14646 1710 aa33.68■■■□□ 2.98
TMEM249-202ENST00000562477 ABCA5Q8WWZ7 1642 aa33.66■■■□□ 2.98
TMEM249-202ENST00000562477 MAGI1Q96QZ7 1491 aaPredicted RBP33.63■■■□□ 2.97
TMEM249-202ENST00000562477 PBRM1Q86U86 1689 aa33.6■■■□□ 2.97
TMEM249-202ENST00000562477 CHMP7Q8WUX9 453 aaPredicted RBP33.55■■■□□ 2.96
TMEM249-202ENST00000562477 SYNJ2O15056 1496 aa33.51■■■□□ 2.96
TMEM249-202ENST00000562477 TRIM41Q8WV44 630 aa33.42■■■□□ 2.94
TMEM249-202ENST00000562477 RIMBP3CA6NJZ7 1639 aa33.39■■■□□ 2.94
TMEM249-202ENST00000562477 RIMBP3BA6NNM3 1639 aa33.39■■■□□ 2.94
TMEM249-202ENST00000562477 RIMBP3Q9UFD9 1639 aa33.39■■■□□ 2.94
TMEM249-202ENST00000562477 ADAMTS12P58397 1594 aa33.38■■■□□ 2.93
TMEM249-202ENST00000562477 ARHGEF11O15085 1522 aa33.38■■■□□ 2.93
TMEM249-202ENST00000562477 ERICH3Q5RHP9 1530 aa33.35■■■□□ 2.93
TMEM249-202ENST00000562477 CLASP1Q7Z460 1538 aa33.34■■■□□ 2.93
TMEM249-202ENST00000562477 FHAD1B1AJZ9 1412 aa33.31■■■□□ 2.92
TMEM249-202ENST00000562477 GRIN2AQ12879 1464 aa33.3■■■□□ 2.92
TMEM249-202ENST00000562477 KIF27Q86VH2 1401 aa33.23■■■□□ 2.91
TMEM249-202ENST00000562477 IGF1RP08069 1367 aa33.19■■■□□ 2.9
TMEM249-202ENST00000562477 NUP160Q12769 1436 aa33.16■■■□□ 2.9
TMEM249-202ENST00000562477 CEP170Q5SW79 1584 aa33.16■■■□□ 2.9
TMEM249-202ENST00000562477 ARAP1Q96P48 1450 aa33.13■■■□□ 2.89
TMEM249-202ENST00000562477 CYB5RLQ6IPT4 315 aa33.12■■■□□ 2.89
TMEM249-202ENST00000562477 RUSC2Q8N2Y8 1516 aa32.99■■■□□ 2.87
TMEM249-202ENST00000562477 CUL7Q14999 1698 aa32.98■■■□□ 2.87
TMEM249-202ENST00000562477 CARMIL1Q5VZK9 1371 aa32.96■■■□□ 2.87
TMEM249-202ENST00000562477 ERCC6L2Q5T890 1561 aa32.95■■■□□ 2.86
TMEM249-202ENST00000562477 SHROOM2Q13796 1616 aa32.89■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms