RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 NISCHQ9Y2I1 1504 aa40.53■■■■■ 4.08
CLK3-207ENST00000562389 CCDC180Q9P1Z9 1646 aa36.05■■■■□ 3.36
CLK3-207ENST00000562389 ABCC9O60706 1549 aa35.03■■■■□ 3.2
CLK3-207ENST00000562389 NACADO15069 1562 aa33.82■■■■□ 3
CLK3-207ENST00000562389 RB1CC1Q8TDY2 1594 aa33.82■■■■□ 3
CLK3-207ENST00000562389 ZCCHC6Q5VYS8 1495 aaKnown RBP33.82■■■■□ 3
CLK3-207ENST00000562389 MYO15BQ96JP2 1530 aa33.69■■■□□ 2.98
CLK3-207ENST00000562389 DCAF8L2P0C7V8 631 aa33.66■■■□□ 2.98
CLK3-207ENST00000562389 DCAF1Q9Y4B6 1507 aa33.58■■■□□ 2.97
CLK3-207ENST00000562389 UNC13AQ9UPW8 1703 aa33.1■■■□□ 2.89
CLK3-207ENST00000562389 SCRIBQ14160 1630 aa32.83■■■□□ 2.85
CLK3-207ENST00000562389 BICRAQ9NZM4 1560 aa32.79■■■□□ 2.84
CLK3-207ENST00000562389 PABPN1Q86U42 306 aaKnown RBP eCLIP32.7■■■□□ 2.83
CLK3-207ENST00000562389 SHROOM4Q9ULL8 1493 aa32.5■■■□□ 2.79
CLK3-207ENST00000562389 DNAJC5BQ9UF47 199 aa31.98■■■□□ 2.71
CLK3-207ENST00000562389 EIF4G1Q04637 1599 aaKnown RBP31.91■■■□□ 2.7
CLK3-207ENST00000562389 CC2D2AQ9P2K1 1620 aa31.75■■■□□ 2.67
CLK3-207ENST00000562389 CECR2Q9BXF3 1484 aa31.52■■■□□ 2.64
CLK3-207ENST00000562389 SMARCA4P51532 1647 aa31.45■■■□□ 2.62
CLK3-207ENST00000562389 BAZ1AQ9NRL2 1556 aaPredicted RBP31.42■■■□□ 2.62
CLK3-207ENST00000562389 MROH2BQ7Z745 1585 aa31.22■■■□□ 2.59
CLK3-207ENST00000562389 SMARCA2P51531 1590 aa31.21■■■□□ 2.59
CLK3-207ENST00000562389 ATAD2BQ9ULI0 1458 aa31.21■■■□□ 2.59
CLK3-207ENST00000562389 NCAPD3P42695 1498 aa31.18■■■□□ 2.58
CLK3-207ENST00000562389 PEG3Q9GZU2 1588 aa31.16■■■□□ 2.58
CLK3-207ENST00000562389 HMGXB3Q12766 1538 aa31.08■■■□□ 2.57
CLK3-207ENST00000562389 BAZ1BQ9UIG0 1483 aaKnown RBP30.95■■■□□ 2.55
CLK3-207ENST00000562389 WIZO95785 1651 aa30.91■■■□□ 2.54
CLK3-207ENST00000562389 RSF1Q96T23 1441 aaPredicted RBP30.9■■■□□ 2.54
CLK3-207ENST00000562389 TOP2AP11388 1531 aaKnown RBP30.61■■■□□ 2.49
CLK3-207ENST00000562389 LAMC3Q9Y6N6 1575 aa30.37■■■□□ 2.45
CLK3-207ENST00000562389 NESP48681 1621 aa30.36■■■□□ 2.45
CLK3-207ENST00000562389 CADPSQ9ULU8 1353 aa30.26■■■□□ 2.43
CLK3-207ENST00000562389 CCDC88BA6NC98 1476 aa30.2■■■□□ 2.43
CLK3-207ENST00000562389 ERCC6Q03468 1493 aa30.19■■■□□ 2.42
CLK3-207ENST00000562389 CFTRP13569 1480 aa30.12■■■□□ 2.41
CLK3-207ENST00000562389 SUPT5HO00267 1087 aaKnown RBP30.12■■■□□ 2.41
CLK3-207ENST00000562389 PDS5BQ9NTI5 1447 aa30.11■■■□□ 2.41
CLK3-207ENST00000562389 KIF21AQ7Z4S6 1674 aa30.07■■■□□ 2.41
CLK3-207ENST00000562389 PRDM2Q13029 1718 aa30.01■■■□□ 2.39
CLK3-207ENST00000562389 THOC2Q8NI27 1593 aaKnown RBP29.94■■■□□ 2.38
CLK3-207ENST00000562389 FANCD2Q9BXW9 1451 aa29.92■■■□□ 2.38
CLK3-207ENST00000562389 CEP164Q9UPV0 1460 aa29.88■■■□□ 2.37
CLK3-207ENST00000562389 CUX2O14529 1486 aa29.87■■■□□ 2.37
CLK3-207ENST00000562389 MRC2Q9UBG0 1479 aa29.81■■■□□ 2.36
CLK3-207ENST00000562389 WDR62O43379 1518 aa29.74■■■□□ 2.35
CLK3-207ENST00000562389 URB2Q14146 1524 aaKnown RBP29.61■■■□□ 2.33
CLK3-207ENST00000562389 ABCC8Q09428 1581 aa29.48■■■□□ 2.31
CLK3-207ENST00000562389 DNMBPQ6XZF7 1577 aa29.47■■■□□ 2.31
CLK3-207ENST00000562389 TOPBP1Q92547 1522 aa29.46■■■□□ 2.31
CLK3-207ENST00000562389 CUX1P39880 1505 aa29.3■■■□□ 2.28
CLK3-207ENST00000562389 IFT140Q96RY7 1462 aa29.25■■■□□ 2.27
CLK3-207ENST00000562389 POLA1P09884 1462 aaPredicted RBP29.23■■■□□ 2.27
CLK3-207ENST00000562389 FGD5Q6ZNL6 1462 aa29.17■■■□□ 2.26
CLK3-207ENST00000562389 TARBP1Q13395 1621 aaKnown RBP29.16■■■□□ 2.26
CLK3-207ENST00000562389 WRNQ14191 1432 aaPredicted RBP eCLIP29.13■■■□□ 2.25
CLK3-207ENST00000562389 BIVM-ERCC5R4GMW8 1640 aa29.12■■■□□ 2.25
CLK3-207ENST00000562389 TOP2BQ02880 1626 aa29.1■■■□□ 2.25
CLK3-207ENST00000562389 SYNJ1O43426 1573 aa29.09■■■□□ 2.25
CLK3-207ENST00000562389 ZNF608Q9ULD9 1512 aaPredicted RBP29.08■■■□□ 2.25
CLK3-207ENST00000562389 SOGA1O94964 1423 aa29.07■■■□□ 2.24
CLK3-207ENST00000562389 RAD54L2Q9Y4B4 1467 aa29.06■■■□□ 2.24
CLK3-207ENST00000562389 EIF4G3O43432 1585 aaKnown RBP29.02■■■□□ 2.24
CLK3-207ENST00000562389 WDR97A6NE52 1622 aa28.99■■■□□ 2.23
CLK3-207ENST00000562389 DNAJC5Q9H3Z4 198 aa28.95■■■□□ 2.22
CLK3-207ENST00000562389 AQRO60306 1485 aaKnown RBP eCLIP28.91■■■□□ 2.228e-11■■■■■ 43.3
CLK3-207ENST00000562389 ABCA10Q8WWZ4 1543 aa28.91■■■□□ 2.22
CLK3-207ENST00000562389 TDRD9Q8NDG6 1382 aaKnown RBP28.87■■■□□ 2.21
CLK3-207ENST00000562389 ABCA5Q8WWZ7 1642 aa28.81■■■□□ 2.2
CLK3-207ENST00000562389 GAPVD1Q14C86 1478 aa28.76■■■□□ 2.19
CLK3-207ENST00000562389 PBRM1Q86U86 1689 aa28.76■■■□□ 2.19
CLK3-207ENST00000562389 GRIN2BQ13224 1484 aa28.74■■■□□ 2.19
CLK3-207ENST00000562389 SNAPC4Q5SXM2 1469 aa28.69■■■□□ 2.18
CLK3-207ENST00000562389 MAGI1Q96QZ7 1491 aaPredicted RBP28.67■■■□□ 2.18
CLK3-207ENST00000562389 CHD1O14646 1710 aa28.65■■■□□ 2.18
CLK3-207ENST00000562389 OSCARQ8IYS5 282 aa28.58■■■□□ 2.17
CLK3-207ENST00000562389 ERICH3Q5RHP9 1530 aa28.58■■■□□ 2.17
CLK3-207ENST00000562389 SYNJ2O15056 1496 aa28.55■■■□□ 2.16
CLK3-207ENST00000562389 ADAMTS12P58397 1594 aa28.52■■■□□ 2.16
CLK3-207ENST00000562389 KIF27Q86VH2 1401 aa28.52■■■□□ 2.16
CLK3-207ENST00000562389 FBLN2P98095 1184 aa28.48■■■□□ 2.15
CLK3-207ENST00000562389 CHMP7Q8WUX9 453 aaPredicted RBP28.46■■■□□ 2.15
CLK3-207ENST00000562389 TRIM41Q8WV44 630 aa28.46■■■□□ 2.15
CLK3-207ENST00000562389 FHAD1B1AJZ9 1412 aa28.43■■■□□ 2.14
CLK3-207ENST00000562389 GRIN2AQ12879 1464 aa28.38■■■□□ 2.13
CLK3-207ENST00000562389 CUL7Q14999 1698 aa28.37■■■□□ 2.13
CLK3-207ENST00000562389 IGF1RP08069 1367 aa28.36■■■□□ 2.13
CLK3-207ENST00000562389 CLASP1Q7Z460 1538 aa28.33■■■□□ 2.13
CLK3-207ENST00000562389 RUSC2Q8N2Y8 1516 aa28.27■■■□□ 2.12
CLK3-207ENST00000562389 NUP160Q12769 1436 aa28.26■■■□□ 2.11
CLK3-207ENST00000562389 CEP170Q5SW79 1584 aa28.24■■■□□ 2.11
CLK3-207ENST00000562389 CHIC1Q5VXU3 224 aa28.22■■■□□ 2.11
CLK3-207ENST00000562389 CARMIL1Q5VZK9 1371 aa28.2■■■□□ 2.1
CLK3-207ENST00000562389 ARHGEF11O15085 1522 aa28.18■■■□□ 2.1
CLK3-207ENST00000562389 RIMBP3CA6NJZ7 1639 aa28.18■■■□□ 2.1
CLK3-207ENST00000562389 RIMBP3BA6NNM3 1639 aa28.18■■■□□ 2.1
CLK3-207ENST00000562389 RIMBP3Q9UFD9 1639 aa28.18■■■□□ 2.1
CLK3-207ENST00000562389 EEA1Q15075 1411 aa28.08■■■□□ 2.09
CLK3-207ENST00000562389 RAPGEF2Q9Y4G8 1499 aa28.08■■■□□ 2.09
CLK3-207ENST00000562389 SHROOM2Q13796 1616 aa28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms