RNA–Protein interactions for RNA: ENST00000562136.1

HERC2-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 2, humanhuman

TSL 2

Gene HERC2, Length 632 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC2-202ENST00000562136 NISCHQ9Y2I1 1504 aa31.7■■■□□ 2.67
HERC2-202ENST00000562136 CCDC180Q9P1Z9 1646 aa28.5■■■□□ 2.15
HERC2-202ENST00000562136 ABCC9O60706 1549 aa28.29■■■□□ 2.12
HERC2-202ENST00000562136 RB1CC1Q8TDY2 1594 aa27.05■■□□□ 1.92
HERC2-202ENST00000562136 NACADO15069 1562 aa26.9■■□□□ 1.9
HERC2-202ENST00000562136 MYO15BQ96JP2 1530 aa26.63■■□□□ 1.85
HERC2-202ENST00000562136 DNAJC5BQ9UF47 199 aa26.57■■□□□ 1.84
HERC2-202ENST00000562136 UNC13AQ9UPW8 1703 aa26.51■■□□□ 1.83
HERC2-202ENST00000562136 DCAF8L2P0C7V8 631 aa26.48■■□□□ 1.83
HERC2-202ENST00000562136 BICRAQ9NZM4 1560 aa26.31■■□□□ 1.8
HERC2-202ENST00000562136 PABPN1Q86U42 306 aaKnown RBP eCLIP26.3■■□□□ 1.8
HERC2-202ENST00000562136 ZCCHC6Q5VYS8 1495 aaKnown RBP26.29■■□□□ 1.8
HERC2-202ENST00000562136 DCAF1Q9Y4B6 1507 aa26.28■■□□□ 1.8
HERC2-202ENST00000562136 SHROOM4Q9ULL8 1493 aa26■■□□□ 1.75
HERC2-202ENST00000562136 SCRIBQ14160 1630 aa25.81■■□□□ 1.72
HERC2-202ENST00000562136 CC2D2AQ9P2K1 1620 aa25.64■■□□□ 1.7
HERC2-202ENST00000562136 EIF4G1Q04637 1599 aaKnown RBP25.61■■□□□ 1.69
HERC2-202ENST00000562136 CECR2Q9BXF3 1484 aa25.53■■□□□ 1.68
HERC2-202ENST00000562136 NCAPD3P42695 1498 aa24.84■■□□□ 1.57
HERC2-202ENST00000562136 ATAD2BQ9ULI0 1458 aa24.73■■□□□ 1.55
HERC2-202ENST00000562136 SMARCA4P51532 1647 aa24.72■■□□□ 1.55
HERC2-202ENST00000562136 SMARCA2P51531 1590 aa24.67■■□□□ 1.54
HERC2-202ENST00000562136 HMGXB3Q12766 1538 aa24.66■■□□□ 1.54
HERC2-202ENST00000562136 BAZ1AQ9NRL2 1556 aaPredicted RBP24.59■■□□□ 1.53
HERC2-202ENST00000562136 PEG3Q9GZU2 1588 aa24.57■■□□□ 1.52
HERC2-202ENST00000562136 CUX2O14529 1486 aa24.48■■□□□ 1.51
HERC2-202ENST00000562136 BAZ1BQ9UIG0 1483 aaKnown RBP24.44■■□□□ 1.5
HERC2-202ENST00000562136 ERCC6Q03468 1493 aa24.4■■□□□ 1.5
HERC2-202ENST00000562136 DNAJC5Q9H3Z4 198 aa24.4■■□□□ 1.5
HERC2-202ENST00000562136 MROH2BQ7Z745 1585 aa24.39■■□□□ 1.5
HERC2-202ENST00000562136 NESP48681 1621 aa24.35■■□□□ 1.49
HERC2-202ENST00000562136 LAMC3Q9Y6N6 1575 aa24.26■■□□□ 1.47
HERC2-202ENST00000562136 THOC2Q8NI27 1593 aaKnown RBP24.17■■□□□ 1.46
HERC2-202ENST00000562136 WIZO95785 1651 aa24.09■■□□□ 1.45
HERC2-202ENST00000562136 KIF21AQ7Z4S6 1674 aa24.08■■□□□ 1.45
HERC2-202ENST00000562136 PDS5BQ9NTI5 1447 aa24.06■■□□□ 1.44
HERC2-202ENST00000562136 CADPSQ9ULU8 1353 aa24.03■■□□□ 1.44
HERC2-202ENST00000562136 RSF1Q96T23 1441 aaPredicted RBP23.9■■□□□ 1.42
HERC2-202ENST00000562136 MRC2Q9UBG0 1479 aa23.86■■□□□ 1.41
HERC2-202ENST00000562136 WDR62O43379 1518 aa23.84■■□□□ 1.41
HERC2-202ENST00000562136 TOP2AP11388 1531 aaKnown RBP23.82■■□□□ 1.4
HERC2-202ENST00000562136 CFTRP13569 1480 aa23.8■■□□□ 1.4
HERC2-202ENST00000562136 CEP164Q9UPV0 1460 aa23.75■■□□□ 1.39
HERC2-202ENST00000562136 FANCD2Q9BXW9 1451 aa23.74■■□□□ 1.39
HERC2-202ENST00000562136 PRDM2Q13029 1718 aa23.62■■□□□ 1.37
HERC2-202ENST00000562136 URB2Q14146 1524 aaKnown RBP23.56■■□□□ 1.36
HERC2-202ENST00000562136 CCDC88BA6NC98 1476 aa23.53■■□□□ 1.36
HERC2-202ENST00000562136 TOPBP1Q92547 1522 aa23.31■■□□□ 1.32
HERC2-202ENST00000562136 IFT140Q96RY7 1462 aa23.3■■□□□ 1.32
HERC2-202ENST00000562136 ABCC8Q09428 1581 aa23.3■■□□□ 1.32
HERC2-202ENST00000562136 OSCARQ8IYS5 282 aa23.28■■□□□ 1.32
HERC2-202ENST00000562136 ZNF608Q9ULD9 1512 aaPredicted RBP23.24■■□□□ 1.31
HERC2-202ENST00000562136 DNMBPQ6XZF7 1577 aa23.24■■□□□ 1.31
HERC2-202ENST00000562136 TRIM41Q8WV44 630 aa23.16■■□□□ 1.3
HERC2-202ENST00000562136 TARBP1Q13395 1621 aaKnown RBP23.15■■□□□ 1.3
HERC2-202ENST00000562136 EIF4G3O43432 1585 aaKnown RBP23.14■■□□□ 1.29
HERC2-202ENST00000562136 POLA1P09884 1462 aaPredicted RBP23.07■■□□□ 1.28
HERC2-202ENST00000562136 RIMBP3CA6NJZ7 1639 aa23.03■■□□□ 1.28
HERC2-202ENST00000562136 RIMBP3BA6NNM3 1639 aa23.03■■□□□ 1.28
HERC2-202ENST00000562136 RIMBP3Q9UFD9 1639 aa23.03■■□□□ 1.28
HERC2-202ENST00000562136 AQRO60306 1485 aaKnown RBP eCLIP23.01■■□□□ 1.272e-6■■■□□ 18.3
HERC2-202ENST00000562136 CHD1O14646 1710 aa22.97■■□□□ 1.27
HERC2-202ENST00000562136 WDR97A6NE52 1622 aa22.96■■□□□ 1.27
HERC2-202ENST00000562136 ARHGEF11O15085 1522 aa22.95■■□□□ 1.26
HERC2-202ENST00000562136 RAD54L2Q9Y4B4 1467 aa22.94■■□□□ 1.26
HERC2-202ENST00000562136 SOGA1O94964 1423 aa22.93■■□□□ 1.26
HERC2-202ENST00000562136 CUX1P39880 1505 aa22.92■■□□□ 1.26
HERC2-202ENST00000562136 FGD5Q6ZNL6 1462 aa22.91■■□□□ 1.26
HERC2-202ENST00000562136 TDRD9Q8NDG6 1382 aaKnown RBP22.85■■□□□ 1.25
HERC2-202ENST00000562136 SNAPC4Q5SXM2 1469 aa22.78■■□□□ 1.24
HERC2-202ENST00000562136 MAGI1Q96QZ7 1491 aaPredicted RBP22.78■■□□□ 1.24
HERC2-202ENST00000562136 GRIN2BQ13224 1484 aa22.75■■□□□ 1.23
HERC2-202ENST00000562136 CLASP1Q7Z460 1538 aa22.74■■□□□ 1.23
HERC2-202ENST00000562136 ARAP1Q96P48 1450 aa22.73■■□□□ 1.23
HERC2-202ENST00000562136 FBLN2P98095 1184 aa22.72■■□□□ 1.23
HERC2-202ENST00000562136 ABCA10Q8WWZ4 1543 aa22.71■■□□□ 1.23
HERC2-202ENST00000562136 PBRM1Q86U86 1689 aa22.7■■□□□ 1.22
HERC2-202ENST00000562136 SYNJ2O15056 1496 aa22.69■■□□□ 1.22
HERC2-202ENST00000562136 ABCA5Q8WWZ7 1642 aa22.68■■□□□ 1.22
HERC2-202ENST00000562136 CYB5RLQ6IPT4 315 aa22.68■■□□□ 1.22
HERC2-202ENST00000562136 SYNJ1O43426 1573 aa22.67■■□□□ 1.22
HERC2-202ENST00000562136 SUPT5HO00267 1087 aaKnown RBP22.67■■□□□ 1.22
HERC2-202ENST00000562136 GAPVD1Q14C86 1478 aa22.66■■□□□ 1.22
HERC2-202ENST00000562136 CHMP7Q8WUX9 453 aaPredicted RBP22.63■■□□□ 1.21
HERC2-202ENST00000562136 BIVM-ERCC5R4GMW8 1640 aa22.61■■□□□ 1.21
HERC2-202ENST00000562136 TOP2BQ02880 1626 aa22.59■■□□□ 1.21
HERC2-202ENST00000562136 WRNQ14191 1432 aaPredicted RBP eCLIP22.57■■□□□ 1.2
HERC2-202ENST00000562136 ADAMTS12P58397 1594 aa22.47■■□□□ 1.19
HERC2-202ENST00000562136 GRIN2AQ12879 1464 aa22.47■■□□□ 1.19
HERC2-202ENST00000562136 NUP160Q12769 1436 aa22.43■■□□□ 1.18
HERC2-202ENST00000562136 ERICH3Q5RHP9 1530 aa22.42■■□□□ 1.18
HERC2-202ENST00000562136 FHAD1B1AJZ9 1412 aa22.4■■□□□ 1.18
HERC2-202ENST00000562136 CEP170Q5SW79 1584 aa22.39■■□□□ 1.18
HERC2-202ENST00000562136 SHROOM2Q13796 1616 aa22.37■■□□□ 1.17
HERC2-202ENST00000562136 TRHP20396 242 aaPredicted RBP22.34■■□□□ 1.17
HERC2-202ENST00000562136 ERCC6L2Q5T890 1561 aa22.33■■□□□ 1.17
HERC2-202ENST00000562136 RUSC2Q8N2Y8 1516 aa22.16■■□□□ 1.14
HERC2-202ENST00000562136 PRG4Q92954 1404 aaPredicted RBP22.14■■□□□ 1.13
HERC2-202ENST00000562136 JPH4Q96JJ6 628 aa22.13■■□□□ 1.13
HERC2-202ENST00000562136 IGF1RP08069 1367 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms