RNA–Protein interactions for RNA: ENST00000562118.1

CDH1-204, Transcript of cadherin 1, humanhuman

TSL 2

Gene CDH1, Length 952 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-204ENST00000562118 NISCHQ9Y2I1 1504 aa32.76■■■□□ 2.83
CDH1-204ENST00000562118 CCDC180Q9P1Z9 1646 aa29.16■■■□□ 2.26
CDH1-204ENST00000562118 ABCC9O60706 1549 aa28.06■■■□□ 2.08
CDH1-204ENST00000562118 ZCCHC6Q5VYS8 1495 aaKnown RBP27.38■■□□□ 1.97
CDH1-204ENST00000562118 MYO15BQ96JP2 1530 aa27.31■■□□□ 1.96
CDH1-204ENST00000562118 NACADO15069 1562 aa27.29■■□□□ 1.96
CDH1-204ENST00000562118 DCAF1Q9Y4B6 1507 aa27.24■■□□□ 1.95
CDH1-204ENST00000562118 RB1CC1Q8TDY2 1594 aa27.22■■□□□ 1.95
CDH1-204ENST00000562118 DCAF8L2P0C7V8 631 aa26.83■■□□□ 1.89
CDH1-204ENST00000562118 UNC13AQ9UPW8 1703 aa26.72■■□□□ 1.87
CDH1-204ENST00000562118 BICRAQ9NZM4 1560 aa26.48■■□□□ 1.83
CDH1-204ENST00000562118 SCRIBQ14160 1630 aa26.42■■□□□ 1.82
CDH1-204ENST00000562118 SHROOM4Q9ULL8 1493 aa26.29■■□□□ 1.8
CDH1-204ENST00000562118 PABPN1Q86U42 306 aaKnown RBP eCLIP26.15■■□□□ 1.78
CDH1-204ENST00000562118 EIF4G1Q04637 1599 aaKnown RBP25.69■■□□□ 1.7
CDH1-204ENST00000562118 DNAJC5BQ9UF47 199 aa25.58■■□□□ 1.69
CDH1-204ENST00000562118 CC2D2AQ9P2K1 1620 aa25.52■■□□□ 1.68
CDH1-204ENST00000562118 CECR2Q9BXF3 1484 aa25.42■■□□□ 1.66
CDH1-204ENST00000562118 SMARCA4P51532 1647 aa25.4■■□□□ 1.66
CDH1-204ENST00000562118 BAZ1AQ9NRL2 1556 aaPredicted RBP25.37■■□□□ 1.65
CDH1-204ENST00000562118 PEG3Q9GZU2 1588 aa25.25■■□□□ 1.63
CDH1-204ENST00000562118 MROH2BQ7Z745 1585 aa25.21■■□□□ 1.63
CDH1-204ENST00000562118 ATAD2BQ9ULI0 1458 aa25.16■■□□□ 1.62
CDH1-204ENST00000562118 SMARCA2P51531 1590 aa25.16■■□□□ 1.62
CDH1-204ENST00000562118 NCAPD3P42695 1498 aa25.15■■□□□ 1.62
CDH1-204ENST00000562118 HMGXB3Q12766 1538 aa25.11■■□□□ 1.61
CDH1-204ENST00000562118 RSF1Q96T23 1441 aaPredicted RBP24.98■■□□□ 1.59
CDH1-204ENST00000562118 WIZO95785 1651 aa24.94■■□□□ 1.58
CDH1-204ENST00000562118 BAZ1BQ9UIG0 1483 aaKnown RBP24.91■■□□□ 1.58
CDH1-204ENST00000562118 TOP2AP11388 1531 aaKnown RBP24.74■■□□□ 1.55
CDH1-204ENST00000562118 LAMC3Q9Y6N6 1575 aa24.47■■□□□ 1.51
CDH1-204ENST00000562118 NESP48681 1621 aa24.39■■□□□ 1.5
CDH1-204ENST00000562118 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
CDH1-204ENST00000562118 CADPSQ9ULU8 1353 aa24.35■■□□□ 1.49
CDH1-204ENST00000562118 CFTRP13569 1480 aa24.32■■□□□ 1.48
CDH1-204ENST00000562118 PRDM2Q13029 1718 aa24.27■■□□□ 1.48
CDH1-204ENST00000562118 KIF21AQ7Z4S6 1674 aa24.21■■□□□ 1.47
CDH1-204ENST00000562118 PDS5BQ9NTI5 1447 aa24.19■■□□□ 1.46
CDH1-204ENST00000562118 SUPT5HO00267 1087 aaKnown RBP24.17■■□□□ 1.46
CDH1-204ENST00000562118 ERCC6Q03468 1493 aa24.13■■□□□ 1.45
CDH1-204ENST00000562118 THOC2Q8NI27 1593 aaKnown RBP24.13■■□□□ 1.45
CDH1-204ENST00000562118 FANCD2Q9BXW9 1451 aa24.07■■□□□ 1.44
CDH1-204ENST00000562118 CEP164Q9UPV0 1460 aa24.02■■□□□ 1.44
CDH1-204ENST00000562118 CUX2O14529 1486 aa23.99■■□□□ 1.43
CDH1-204ENST00000562118 WDR62O43379 1518 aa23.98■■□□□ 1.43
CDH1-204ENST00000562118 MRC2Q9UBG0 1479 aa23.97■■□□□ 1.43
CDH1-204ENST00000562118 URB2Q14146 1524 aaKnown RBP23.86■■□□□ 1.41
CDH1-204ENST00000562118 ABCC8Q09428 1581 aa23.77■■□□□ 1.4
CDH1-204ENST00000562118 DNMBPQ6XZF7 1577 aa23.77■■□□□ 1.4
CDH1-204ENST00000562118 TOPBP1Q92547 1522 aa23.74■■□□□ 1.39
CDH1-204ENST00000562118 CUX1P39880 1505 aa23.65■■□□□ 1.38
CDH1-204ENST00000562118 BIVM-ERCC5R4GMW8 1640 aa23.58■■□□□ 1.36
CDH1-204ENST00000562118 POLA1P09884 1462 aaPredicted RBP23.56■■□□□ 1.36
CDH1-204ENST00000562118 TARBP1Q13395 1621 aaKnown RBP23.55■■□□□ 1.36
CDH1-204ENST00000562118 TOP2BQ02880 1626 aa23.54■■□□□ 1.36
CDH1-204ENST00000562118 IFT140Q96RY7 1462 aa23.54■■□□□ 1.36
CDH1-204ENST00000562118 SYNJ1O43426 1573 aa23.51■■□□□ 1.35
CDH1-204ENST00000562118 WRNQ14191 1432 aaPredicted RBP eCLIP23.5■■□□□ 1.35
CDH1-204ENST00000562118 FGD5Q6ZNL6 1462 aa23.49■■□□□ 1.35
CDH1-204ENST00000562118 WDR97A6NE52 1622 aa23.47■■□□□ 1.35
CDH1-204ENST00000562118 ZNF608Q9ULD9 1512 aaPredicted RBP23.38■■□□□ 1.33
CDH1-204ENST00000562118 EIF4G3O43432 1585 aaKnown RBP23.38■■□□□ 1.33
CDH1-204ENST00000562118 RAD54L2Q9Y4B4 1467 aa23.37■■□□□ 1.33
CDH1-204ENST00000562118 SOGA1O94964 1423 aa23.37■■□□□ 1.33
CDH1-204ENST00000562118 ABCA10Q8WWZ4 1543 aa23.35■■□□□ 1.33
CDH1-204ENST00000562118 ABCA5Q8WWZ7 1642 aa23.3■■□□□ 1.32
CDH1-204ENST00000562118 AQRO60306 1485 aaKnown RBP eCLIP23.23■■□□□ 1.31
CDH1-204ENST00000562118 PBRM1Q86U86 1689 aa23.19■■□□□ 1.3
CDH1-204ENST00000562118 TDRD9Q8NDG6 1382 aaKnown RBP23.17■■□□□ 1.3
CDH1-204ENST00000562118 GAPVD1Q14C86 1478 aa23.15■■□□□ 1.3
CDH1-204ENST00000562118 GRIN2BQ13224 1484 aa23.14■■□□□ 1.29
CDH1-204ENST00000562118 MAGI1Q96QZ7 1491 aaPredicted RBP23.11■■□□□ 1.29
CDH1-204ENST00000562118 ERICH3Q5RHP9 1530 aa23.08■■□□□ 1.29
CDH1-204ENST00000562118 SNAPC4Q5SXM2 1469 aa23.06■■□□□ 1.28
CDH1-204ENST00000562118 CHD1O14646 1710 aa23.04■■□□□ 1.28
CDH1-204ENST00000562118 ADAMTS12P58397 1594 aa23.01■■□□□ 1.27
CDH1-204ENST00000562118 SYNJ2O15056 1496 aa22.98■■□□□ 1.27
CDH1-204ENST00000562118 KIF27Q86VH2 1401 aa22.98■■□□□ 1.27
CDH1-204ENST00000562118 CUL7Q14999 1698 aa22.92■■□□□ 1.26
CDH1-204ENST00000562118 FHAD1B1AJZ9 1412 aa22.91■■□□□ 1.26
CDH1-204ENST00000562118 DNAJC5Q9H3Z4 198 aa22.9■■□□□ 1.26
CDH1-204ENST00000562118 TRIM41Q8WV44 630 aa22.89■■□□□ 1.25
CDH1-204ENST00000562118 IGF1RP08069 1367 aa22.89■■□□□ 1.25
CDH1-204ENST00000562118 GRIN2AQ12879 1464 aa22.85■■□□□ 1.25
CDH1-204ENST00000562118 CLASP1Q7Z460 1538 aa22.85■■□□□ 1.25
CDH1-204ENST00000562118 OSCARQ8IYS5 282 aa22.84■■□□□ 1.25
CDH1-204ENST00000562118 RUSC2Q8N2Y8 1516 aa22.83■■□□□ 1.25
CDH1-204ENST00000562118 CHIC1Q5VXU3 224 aa22.83■■□□□ 1.25
CDH1-204ENST00000562118 NUP160Q12769 1436 aa22.81■■□□□ 1.24
CDH1-204ENST00000562118 CEP170Q5SW79 1584 aa22.77■■□□□ 1.24
CDH1-204ENST00000562118 CHMP7Q8WUX9 453 aaPredicted RBP22.76■■□□□ 1.23
CDH1-204ENST00000562118 EEA1Q15075 1411 aa22.73■■□□□ 1.23
CDH1-204ENST00000562118 CARMIL1Q5VZK9 1371 aa22.7■■□□□ 1.22
CDH1-204ENST00000562118 PRXQ9BXM0 1461 aa22.69■■□□□ 1.22
CDH1-204ENST00000562118 FBLN2P98095 1184 aa22.69■■□□□ 1.22
CDH1-204ENST00000562118 SHROOM2Q13796 1616 aa22.68■■□□□ 1.22
CDH1-204ENST00000562118 RAPGEF2Q9Y4G8 1499 aa22.64■■□□□ 1.21
CDH1-204ENST00000562118 ARHGEF11O15085 1522 aa22.62■■□□□ 1.21
CDH1-204ENST00000562118 RIMBP3CA6NJZ7 1639 aa22.61■■□□□ 1.21
CDH1-204ENST00000562118 RIMBP3BA6NNM3 1639 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms