RNA–Protein interactions for RNA: ENST00000562038.1

LINC01963-201, Transcript of long intergenic non-protein coding RNA 1963, humanhuman

BASIC

Gene LINC01963, Length 3,148 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01963-201ENST00000562038 NISCHQ9Y2I1 1504 aa13.97□□□□□ -0.17
LINC01963-201ENST00000562038 CCDC180Q9P1Z9 1646 aa13.1□□□□□ -0.31
LINC01963-201ENST00000562038 ABCC9O60706 1549 aa12.8□□□□□ -0.36
LINC01963-201ENST00000562038 DNAJC5BQ9UF47 199 aa12.7□□□□□ -0.38
LINC01963-201ENST00000562038 DNAJC5Q9H3Z4 198 aa12.69□□□□□ -0.38
LINC01963-201ENST00000562038 SHROOM4Q9ULL8 1493 aa12.54□□□□□ -0.4
LINC01963-201ENST00000562038 RB1CC1Q8TDY2 1594 aa12.5□□□□□ -0.41
LINC01963-201ENST00000562038 UNC13AQ9UPW8 1703 aa12.35□□□□□ -0.43
LINC01963-201ENST00000562038 NACADO15069 1562 aa12.34□□□□□ -0.43
LINC01963-201ENST00000562038 MYO15BQ96JP2 1530 aa12.26□□□□□ -0.45
LINC01963-201ENST00000562038 CUX2O14529 1486 aa12.19□□□□□ -0.46
LINC01963-201ENST00000562038 BICRAQ9NZM4 1560 aa12.17□□□□□ -0.46
LINC01963-201ENST00000562038 CC2D2AQ9P2K1 1620 aa12□□□□□ -0.49
LINC01963-201ENST00000562038 CECR2Q9BXF3 1484 aa11.9□□□□□ -0.5
LINC01963-201ENST00000562038 DCAF1Q9Y4B6 1507 aa11.9□□□□□ -0.5
LINC01963-201ENST00000562038 EIF4G1Q04637 1599 aaKnown RBP11.81□□□□□ -0.52
LINC01963-201ENST00000562038 ZCCHC6Q5VYS8 1495 aaKnown RBP11.74□□□□□ -0.53
LINC01963-201ENST00000562038 THOC2Q8NI27 1593 aaKnown RBP11.54□□□□□ -0.56
LINC01963-201ENST00000562038 PABPN1Q86U42 306 aaKnown RBP eCLIP11.33□□□□□ -0.6
LINC01963-201ENST00000562038 HMGXB3Q12766 1538 aa11.27□□□□□ -0.6
LINC01963-201ENST00000562038 LAMC3Q9Y6N6 1575 aa11.24□□□□□ -0.61
LINC01963-201ENST00000562038 NCAPD3P42695 1498 aa11.24□□□□□ -0.61
LINC01963-201ENST00000562038 BAZ1AQ9NRL2 1556 aaPredicted RBP11.24□□□□□ -0.61
LINC01963-201ENST00000562038 ERCC6Q03468 1493 aa11.18□□□□□ -0.62
LINC01963-201ENST00000562038 RIMBP3CA6NJZ7 1639 aa11.17□□□□□ -0.62
LINC01963-201ENST00000562038 RIMBP3BA6NNM3 1639 aa11.17□□□□□ -0.62
LINC01963-201ENST00000562038 RIMBP3Q9UFD9 1639 aa11.17□□□□□ -0.62
LINC01963-201ENST00000562038 WDR62O43379 1518 aa11.16□□□□□ -0.62
LINC01963-201ENST00000562038 SMARCA2P51531 1590 aa11.14□□□□□ -0.63
LINC01963-201ENST00000562038 SCRIBQ14160 1630 aa11.1□□□□□ -0.63
LINC01963-201ENST00000562038 PEG3Q9GZU2 1588 aa11.08□□□□□ -0.64
LINC01963-201ENST00000562038 KIF21AQ7Z4S6 1674 aa11.07□□□□□ -0.64
LINC01963-201ENST00000562038 TRIM41Q8WV44 630 aa10.94□□□□□ -0.66
LINC01963-201ENST00000562038 MRC2Q9UBG0 1479 aa10.93□□□□□ -0.66
LINC01963-201ENST00000562038 ARHGEF11O15085 1522 aa10.92□□□□□ -0.66
LINC01963-201ENST00000562038 ATAD2BQ9ULI0 1458 aa10.86□□□□□ -0.67
LINC01963-201ENST00000562038 SMARCA4P51532 1647 aa10.86□□□□□ -0.67
LINC01963-201ENST00000562038 PDS5BQ9NTI5 1447 aa10.86□□□□□ -0.67
LINC01963-201ENST00000562038 RSF1Q96T23 1441 aaPredicted RBP10.85□□□□□ -0.67
LINC01963-201ENST00000562038 PRDM2Q13029 1718 aa10.82□□□□□ -0.68
LINC01963-201ENST00000562038 ERCC6L2Q5T890 1561 aa10.82□□□□□ -0.68
LINC01963-201ENST00000562038 WDR97A6NE52 1622 aa10.79□□□□□ -0.68
LINC01963-201ENST00000562038 DCAF8L2P0C7V8 631 aa10.79□□□□□ -0.68
LINC01963-201ENST00000562038 NESP48681 1621 aa10.78□□□□□ -0.68
LINC01963-201ENST00000562038 OSCARQ8IYS5 282 aa10.75□□□□□ -0.69
LINC01963-201ENST00000562038 ARAP1Q96P48 1450 aa10.73□□□□□ -0.69
LINC01963-201ENST00000562038 AEBP2Q6ZN18 517 aaPredicted RBP10.71□□□□□ -0.7
LINC01963-201ENST00000562038 CLASP1Q7Z460 1538 aa10.67□□□□□ -0.7
LINC01963-201ENST00000562038 CHD1O14646 1710 aa10.62□□□□□ -0.71
LINC01963-201ENST00000562038 TOP2AP11388 1531 aaKnown RBP10.62□□□□□ -0.71
LINC01963-201ENST00000562038 MROH2BQ7Z745 1585 aa10.62□□□□□ -0.71
LINC01963-201ENST00000562038 ILDR1Q86SU0 546 aaPredicted RBP10.6□□□□□ -0.71
LINC01963-201ENST00000562038 KIF13AQ9H1H9 1805 aa10.59□□□□□ -0.71
LINC01963-201ENST00000562038 BAZ1BQ9UIG0 1483 aaKnown RBP10.58□□□□□ -0.72
LINC01963-201ENST00000562038 CEP164Q9UPV0 1460 aa10.56□□□□□ -0.72
LINC01963-201ENST00000562038 IFT140Q96RY7 1462 aa10.55□□□□□ -0.72
LINC01963-201ENST00000562038 CADPSQ9ULU8 1353 aa10.55□□□□□ -0.72
LINC01963-201ENST00000562038 WIZO95785 1651 aa10.52□□□□□ -0.73
LINC01963-201ENST00000562038 EIF4G3O43432 1585 aaKnown RBP10.5□□□□□ -0.73
LINC01963-201ENST00000562038 URB2Q14146 1524 aaKnown RBP10.45□□□□□ -0.74
LINC01963-201ENST00000562038 TARBP1Q13395 1621 aaKnown RBP10.43□□□□□ -0.74
LINC01963-201ENST00000562038 CFTRP13569 1480 aa10.43□□□□□ -0.74
LINC01963-201ENST00000562038 ABCC8Q09428 1581 aa10.42□□□□□ -0.74
LINC01963-201ENST00000562038 SYNJ1O43426 1573 aa10.41□□□□□ -0.74
LINC01963-201ENST00000562038 FANCD2Q9BXW9 1451 aa10.4□□□□□ -0.75
LINC01963-201ENST00000562038 SHROOM2Q13796 1616 aa10.38□□□□□ -0.75
LINC01963-201ENST00000562038 HECW2Q9P2P5 1572 aa10.35□□□□□ -0.75
LINC01963-201ENST00000562038 MAPKBP1O60336 1514 aa10.34□□□□□ -0.75
LINC01963-201ENST00000562038 FBXO41Q8TF61 875 aa10.31□□□□□ -0.76
LINC01963-201ENST00000562038 DNMBPQ6XZF7 1577 aa10.28□□□□□ -0.76
LINC01963-201ENST00000562038 CCDC88BA6NC98 1476 aa10.28□□□□□ -0.76
LINC01963-201ENST00000562038 MAGI1Q96QZ7 1491 aaPredicted RBP10.27□□□□□ -0.77
LINC01963-201ENST00000562038 KDM6BO15054 1643 aa10.26□□□□□ -0.77
LINC01963-201ENST00000562038 DIP2BQ9P265 1576 aa10.25□□□□□ -0.77
LINC01963-201ENST00000562038 SOCS7O14512 581 aa10.23□□□□□ -0.77
LINC01963-201ENST00000562038 TOP2BQ02880 1626 aa10.23□□□□□ -0.77
LINC01963-201ENST00000562038 ZNF608Q9ULD9 1512 aaPredicted RBP10.23□□□□□ -0.77
LINC01963-201ENST00000562038 GLI2P10070 1586 aa10.21□□□□□ -0.78
LINC01963-201ENST00000562038 ABCC10Q5T3U5 1492 aa10.2□□□□□ -0.78
LINC01963-201ENST00000562038 TOPBP1Q92547 1522 aa10.2□□□□□ -0.78
LINC01963-201ENST00000562038 BIVM-ERCC5R4GMW8 1640 aa10.19□□□□□ -0.78
LINC01963-201ENST00000562038 TRHP20396 242 aaPredicted RBP10.18□□□□□ -0.78
LINC01963-201ENST00000562038 GAPVD1Q14C86 1478 aa10.17□□□□□ -0.78
LINC01963-201ENST00000562038 PPRC1Q5VV67 1664 aaKnown RBP10.17□□□□□ -0.78
LINC01963-201ENST00000562038 LMTK3Q96Q04 1460 aa10.17□□□□□ -0.78
LINC01963-201ENST00000562038 KDM4FA0A1W2PPD8 638 aa10.17□□□□□ -0.78
LINC01963-201ENST00000562038 PBRM1Q86U86 1689 aa10.15□□□□□ -0.78
LINC01963-201ENST00000562038 CYB5RLQ6IPT4 315 aa10.15□□□□□ -0.79
LINC01963-201ENST00000562038 SYNJ2O15056 1496 aa10.12□□□□□ -0.79
LINC01963-201ENST00000562038 SPATA31D1Q6ZQQ2 1576 aa10.11□□□□□ -0.79
LINC01963-201ENST00000562038 ADGRL1O94910 1474 aa10.1□□□□□ -0.79
LINC01963-201ENST00000562038 IQSEC2Q5JU85 1478 aa10.08□□□□□ -0.8
LINC01963-201ENST00000562038 CEP170Q5SW79 1584 aa10.05□□□□□ -0.8
LINC01963-201ENST00000562038 ABCA5Q8WWZ7 1642 aa10.04□□□□□ -0.8
LINC01963-201ENST00000562038 KIAA0586Q9BVV6 1533 aa10.04□□□□□ -0.8
LINC01963-201ENST00000562038 NUP160Q12769 1436 aa10.02□□□□□ -0.8
LINC01963-201ENST00000562038 MAP3K4Q9Y6R4 1608 aa10.02□□□□□ -0.81
LINC01963-201ENST00000562038 CUX1P39880 1505 aa10.01□□□□□ -0.81
LINC01963-201ENST00000562038 ADAMTSL3P82987 1691 aa10□□□□□ -0.81
LINC01963-201ENST00000562038 GRIN2BQ13224 1484 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 291.3 ms