RNA–Protein interactions for RNA: ENST00000561978.1

PCAT1-202, prostate cancer associated transcript 1, humanhuman

TSL 1 (best) BASIC

Gene PCAT1, Length 1,992 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCAT1-202ENST00000561978 AEBP2Q6ZN18 517 aaPredicted RBP27.41■■□□□ 1.98
PCAT1-202ENST00000561978 NISCHQ9Y2I1 1504 aa26.33■■□□□ 1.81
PCAT1-202ENST00000561978 CHIC1Q5VXU3 224 aa26.13■■□□□ 1.77
PCAT1-202ENST00000561978 CCDC180Q9P1Z9 1646 aa23.27■■□□□ 1.32
PCAT1-202ENST00000561978 SENP3Q9H4L4 574 aaPredicted RBP23.19■■□□□ 1.3
PCAT1-202ENST00000561978 PHF23Q9BUL5 403 aaPredicted RBP23.02■■□□□ 1.28
PCAT1-202ENST00000561978 ABCC9O60706 1549 aa22.73■■□□□ 1.23
PCAT1-202ENST00000561978 DCAF8L2P0C7V8 631 aa22.08■■□□□ 1.12
PCAT1-202ENST00000561978 ZCCHC6Q5VYS8 1495 aaKnown RBP21.96■■□□□ 1.11
PCAT1-202ENST00000561978 RB1CC1Q8TDY2 1594 aa21.86■■□□□ 1.09
PCAT1-202ENST00000561978 NACADO15069 1562 aa21.85■■□□□ 1.09
PCAT1-202ENST00000561978 MYO15BQ96JP2 1530 aa21.73■■□□□ 1.07
PCAT1-202ENST00000561978 DCAF1Q9Y4B6 1507 aa21.72■■□□□ 1.07
PCAT1-202ENST00000561978 FOXD1Q16676 465 aa21.69■■□□□ 1.06
PCAT1-202ENST00000561978 UNC13AQ9UPW8 1703 aa21.43■■□□□ 1.02
PCAT1-202ENST00000561978 SCRIBQ14160 1630 aa21.36■■□□□ 1.01
PCAT1-202ENST00000561978 PABPN1Q86U42 306 aaKnown RBP eCLIP21.32■■□□□ 1
PCAT1-202ENST00000561978 BICRAQ9NZM4 1560 aa21.22■□□□□ 0.99
PCAT1-202ENST00000561978 SHROOM4Q9ULL8 1493 aa21.05■□□□□ 0.96
PCAT1-202ENST00000561978 PLPPR3Q6T4P5 718 aa20.92■□□□□ 0.94
PCAT1-202ENST00000561978 DNAJC5BQ9UF47 199 aa20.74■□□□□ 0.91
PCAT1-202ENST00000561978 EIF4G1Q04637 1599 aaKnown RBP20.65■□□□□ 0.9
PCAT1-202ENST00000561978 CECR2Q9BXF3 1484 aa20.55■□□□□ 0.88
PCAT1-202ENST00000561978 CC2D2AQ9P2K1 1620 aa20.54■□□□□ 0.88
PCAT1-202ENST00000561978 PPP6R1Q9UPN7 881 aa20.51■□□□□ 0.87
PCAT1-202ENST00000561978 ADRA2BP18089 450 aa20.43■□□□□ 0.86
PCAT1-202ENST00000561978 SMARCA4P51532 1647 aa20.4■□□□□ 0.86
PCAT1-202ENST00000561978 BAZ1AQ9NRL2 1556 aaPredicted RBP20.39■□□□□ 0.85
PCAT1-202ENST00000561978 MROH2BQ7Z745 1585 aa20.33■□□□□ 0.85
PCAT1-202ENST00000561978 PIAS4Q8N2W9 510 aaPredicted RBP20.27■□□□□ 0.84
PCAT1-202ENST00000561978 ATAD2BQ9ULI0 1458 aa20.25■□□□□ 0.83
PCAT1-202ENST00000561978 SMARCA2P51531 1590 aa20.2■□□□□ 0.82
PCAT1-202ENST00000561978 NCAPD3P42695 1498 aa20.18■□□□□ 0.82
PCAT1-202ENST00000561978 RSF1Q96T23 1441 aaPredicted RBP20.16■□□□□ 0.82
PCAT1-202ENST00000561978 PEG3Q9GZU2 1588 aa20.16■□□□□ 0.82
PCAT1-202ENST00000561978 SUPT5HO00267 1087 aaKnown RBP20.15■□□□□ 0.82
PCAT1-202ENST00000561978 WIZO95785 1651 aa20.14■□□□□ 0.82
PCAT1-202ENST00000561978 BAZ1BQ9UIG0 1483 aaKnown RBP20.1■□□□□ 0.81
PCAT1-202ENST00000561978 MSH5O43196 834 aa20.08■□□□□ 0.81
PCAT1-202ENST00000561978 HMGXB3Q12766 1538 aa20.08■□□□□ 0.81
PCAT1-202ENST00000561978 TOP2AP11388 1531 aaKnown RBP19.87■□□□□ 0.77
PCAT1-202ENST00000561978 NESP48681 1621 aa19.73■□□□□ 0.75
PCAT1-202ENST00000561978 CCDC88BA6NC98 1476 aa19.68■□□□□ 0.74
PCAT1-202ENST00000561978 CADPSQ9ULU8 1353 aa19.63■□□□□ 0.73
PCAT1-202ENST00000561978 LAMC3Q9Y6N6 1575 aa19.62■□□□□ 0.73
PCAT1-202ENST00000561978 ERCC6Q03468 1493 aa19.56■□□□□ 0.72
PCAT1-202ENST00000561978 CFTRP13569 1480 aa19.54■□□□□ 0.72
PCAT1-202ENST00000561978 PDS5BQ9NTI5 1447 aa19.49■□□□□ 0.71
PCAT1-202ENST00000561978 KIF21AQ7Z4S6 1674 aa19.48■□□□□ 0.71
PCAT1-202ENST00000561978 FANCD2Q9BXW9 1451 aa19.42■□□□□ 0.7
PCAT1-202ENST00000561978 PRDM2Q13029 1718 aa19.39■□□□□ 0.69
PCAT1-202ENST00000561978 CEP164Q9UPV0 1460 aa19.36■□□□□ 0.69
PCAT1-202ENST00000561978 POTEDQ86YR6 584 aa19.36■□□□□ 0.69
PCAT1-202ENST00000561978 THOC2Q8NI27 1593 aaKnown RBP19.33■□□□□ 0.69
PCAT1-202ENST00000561978 MRC2Q9UBG0 1479 aa19.29■□□□□ 0.68
PCAT1-202ENST00000561978 URB2Q14146 1524 aaKnown RBP19.22■□□□□ 0.67
PCAT1-202ENST00000561978 WDR62O43379 1518 aa19.21■□□□□ 0.67
PCAT1-202ENST00000561978 CUX2O14529 1486 aa19.21■□□□□ 0.67
PCAT1-202ENST00000561978 TOPBP1Q92547 1522 aa19.12■□□□□ 0.65
PCAT1-202ENST00000561978 DNMBPQ6XZF7 1577 aa19.09■□□□□ 0.65
PCAT1-202ENST00000561978 ABCC8Q09428 1581 aa19.07■□□□□ 0.64
PCAT1-202ENST00000561978 CUX1P39880 1505 aa19.05■□□□□ 0.64
PCAT1-202ENST00000561978 WRNQ14191 1432 aaPredicted RBP eCLIP19■□□□□ 0.63
PCAT1-202ENST00000561978 POLA1P09884 1462 aaPredicted RBP18.98■□□□□ 0.63
PCAT1-202ENST00000561978 FGD5Q6ZNL6 1462 aa18.97■□□□□ 0.63
PCAT1-202ENST00000561978 SYNJ1O43426 1573 aa18.96■□□□□ 0.63
PCAT1-202ENST00000561978 TRIM41Q8WV44 630 aa18.94■□□□□ 0.62
PCAT1-202ENST00000561978 RAD54L2Q9Y4B4 1467 aa18.93■□□□□ 0.62
PCAT1-202ENST00000561978 IFT140Q96RY7 1462 aa18.93■□□□□ 0.62
PCAT1-202ENST00000561978 TOP2BQ02880 1626 aa18.91■□□□□ 0.62
PCAT1-202ENST00000561978 ZNF608Q9ULD9 1512 aaPredicted RBP18.9■□□□□ 0.62
PCAT1-202ENST00000561978 SOGA1O94964 1423 aa18.9■□□□□ 0.62
PCAT1-202ENST00000561978 TARBP1Q13395 1621 aaKnown RBP18.89■□□□□ 0.62
PCAT1-202ENST00000561978 BIVM-ERCC5R4GMW8 1640 aa18.89■□□□□ 0.62
PCAT1-202ENST00000561978 TDRD9Q8NDG6 1382 aaKnown RBP18.83■□□□□ 0.6
PCAT1-202ENST00000561978 AQRO60306 1485 aaKnown RBP eCLIP18.82■□□□□ 0.6
PCAT1-202ENST00000561978 EIF4G3O43432 1585 aaKnown RBP18.8■□□□□ 0.6
PCAT1-202ENST00000561978 LOC105371045A0A1W2PR82 267 aa18.79■□□□□ 0.6
PCAT1-202ENST00000561978 WDR97A6NE52 1622 aa18.77■□□□□ 0.59
PCAT1-202ENST00000561978 ABCA10Q8WWZ4 1543 aa18.76■□□□□ 0.59
PCAT1-202ENST00000561978 MAPK8IP2Q13387 824 aaPredicted RBP18.73■□□□□ 0.59
PCAT1-202ENST00000561978 GAPVD1Q14C86 1478 aa18.68■□□□□ 0.58
PCAT1-202ENST00000561978 ABCA5Q8WWZ7 1642 aa18.67■□□□□ 0.58
PCAT1-202ENST00000561978 GRIN2BQ13224 1484 aa18.64■□□□□ 0.57
PCAT1-202ENST00000561978 PBRM1Q86U86 1689 aa18.63■□□□□ 0.57
PCAT1-202ENST00000561978 SNAPC4Q5SXM2 1469 aa18.62■□□□□ 0.57
PCAT1-202ENST00000561978 FBLN2P98095 1184 aa18.61■□□□□ 0.57
PCAT1-202ENST00000561978 FAM9AQ8IZU1 332 aaPredicted RBP18.57■□□□□ 0.56
PCAT1-202ENST00000561978 KIF27Q86VH2 1401 aa18.57■□□□□ 0.56
PCAT1-202ENST00000561978 MAGI1Q96QZ7 1491 aaPredicted RBP18.55■□□□□ 0.56
PCAT1-202ENST00000561978 CHD1O14646 1710 aa18.55■□□□□ 0.56
PCAT1-202ENST00000561978 RUSC2Q8N2Y8 1516 aa18.53■□□□□ 0.56
PCAT1-202ENST00000561978 CHMP7Q8WUX9 453 aaPredicted RBP18.53■□□□□ 0.56
PCAT1-202ENST00000561978 ERICH3Q5RHP9 1530 aa18.52■□□□□ 0.56
PCAT1-202ENST00000561978 OSCARQ8IYS5 282 aa18.51■□□□□ 0.55
PCAT1-202ENST00000561978 SYNJ2O15056 1496 aa18.5■□□□□ 0.55
PCAT1-202ENST00000561978 SCAF1Q9H7N4 1312 aaKnown RBP18.49■□□□□ 0.55
PCAT1-202ENST00000561978 IGF1RP08069 1367 aa18.49■□□□□ 0.55
PCAT1-202ENST00000561978 ADAMTS12P58397 1594 aa18.48■□□□□ 0.55
PCAT1-202ENST00000561978 DNAJC5Q9H3Z4 198 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms