RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 NISCHQ9Y2I1 1504 aa38.48■■■■□ 3.75
VPS39-203ENST00000561797 CCDC180Q9P1Z9 1646 aa34.37■■■■□ 3.09
VPS39-203ENST00000561797 ABCC9O60706 1549 aa33.91■■■■□ 3.02
VPS39-203ENST00000561797 RB1CC1Q8TDY2 1594 aa32.47■■■□□ 2.79
VPS39-203ENST00000561797 DCAF8L2P0C7V8 631 aa32.36■■■□□ 2.77
VPS39-203ENST00000561797 NACADO15069 1562 aa32.33■■■□□ 2.77
VPS39-203ENST00000561797 ZCCHC6Q5VYS8 1495 aaKnown RBP31.97■■■□□ 2.71
VPS39-203ENST00000561797 MYO15BQ96JP2 1530 aa31.97■■■□□ 2.71
VPS39-203ENST00000561797 UNC13AQ9UPW8 1703 aa31.89■■■□□ 2.69
VPS39-203ENST00000561797 DCAF1Q9Y4B6 1507 aa31.76■■■□□ 2.68
VPS39-203ENST00000561797 PABPN1Q86U42 306 aaKnown RBP eCLIP31.63■■■□□ 2.65
VPS39-203ENST00000561797 BICRAQ9NZM4 1560 aa31.51■■■□□ 2.63
VPS39-203ENST00000561797 SCRIBQ14160 1630 aa31.38■■■□□ 2.61
VPS39-203ENST00000561797 DNAJC5BQ9UF47 199 aa31.34■■■□□ 2.61
VPS39-203ENST00000561797 SHROOM4Q9ULL8 1493 aa31.03■■■□□ 2.56
VPS39-203ENST00000561797 EIF4G1Q04637 1599 aaKnown RBP30.69■■■□□ 2.5
VPS39-203ENST00000561797 CC2D2AQ9P2K1 1620 aa30.67■■■□□ 2.5
VPS39-203ENST00000561797 CECR2Q9BXF3 1484 aa30.45■■■□□ 2.47
VPS39-203ENST00000561797 SMARCA4P51532 1647 aa29.96■■■□□ 2.39
VPS39-203ENST00000561797 BAZ1AQ9NRL2 1556 aaPredicted RBP29.85■■■□□ 2.37
VPS39-203ENST00000561797 NCAPD3P42695 1498 aa29.8■■■□□ 2.36
VPS39-203ENST00000561797 ATAD2BQ9ULI0 1458 aa29.8■■■□□ 2.36
VPS39-203ENST00000561797 SMARCA2P51531 1590 aa29.77■■■□□ 2.36
VPS39-203ENST00000561797 MROH2BQ7Z745 1585 aa29.68■■■□□ 2.34
VPS39-203ENST00000561797 HMGXB3Q12766 1538 aa29.66■■■□□ 2.34
VPS39-203ENST00000561797 PEG3Q9GZU2 1588 aa29.6■■■□□ 2.33
VPS39-203ENST00000561797 BAZ1BQ9UIG0 1483 aaKnown RBP29.57■■■□□ 2.32
VPS39-203ENST00000561797 WIZO95785 1651 aa29.41■■■□□ 2.3
VPS39-203ENST00000561797 NESP48681 1621 aa29.27■■■□□ 2.28
VPS39-203ENST00000561797 ERCC6Q03468 1493 aa29.23■■■□□ 2.27
VPS39-203ENST00000561797 RSF1Q96T23 1441 aaPredicted RBP29.2■■■□□ 2.26
VPS39-203ENST00000561797 LAMC3Q9Y6N6 1575 aa29.12■■■□□ 2.25
VPS39-203ENST00000561797 TOP2AP11388 1531 aaKnown RBP29■■■□□ 2.23
VPS39-203ENST00000561797 KIF21AQ7Z4S6 1674 aa28.99■■■□□ 2.23
VPS39-203ENST00000561797 CUX2O14529 1486 aa28.97■■■□□ 2.23
VPS39-203ENST00000561797 CADPSQ9ULU8 1353 aa28.93■■■□□ 2.22
VPS39-203ENST00000561797 PDS5BQ9NTI5 1447 aa28.89■■■□□ 2.22
VPS39-203ENST00000561797 THOC2Q8NI27 1593 aaKnown RBP28.88■■■□□ 2.21
VPS39-203ENST00000561797 CFTRP13569 1480 aa28.7■■■□□ 2.18
VPS39-203ENST00000561797 CCDC88BA6NC98 1476 aa28.67■■■□□ 2.18
VPS39-203ENST00000561797 PRDM2Q13029 1718 aa28.64■■■□□ 2.18
VPS39-203ENST00000561797 FANCD2Q9BXW9 1451 aa28.64■■■□□ 2.17
VPS39-203ENST00000561797 MRC2Q9UBG0 1479 aa28.64■■■□□ 2.17
VPS39-203ENST00000561797 CEP164Q9UPV0 1460 aa28.63■■■□□ 2.17
VPS39-203ENST00000561797 WDR62O43379 1518 aa28.54■■■□□ 2.16
VPS39-203ENST00000561797 DNAJC5Q9H3Z4 198 aa28.41■■■□□ 2.14
VPS39-203ENST00000561797 URB2Q14146 1524 aaKnown RBP28.38■■■□□ 2.13
VPS39-203ENST00000561797 SUPT5HO00267 1087 aaKnown RBP28.35■■■□□ 2.13
VPS39-203ENST00000561797 TOPBP1Q92547 1522 aa28.16■■■□□ 2.1
VPS39-203ENST00000561797 ABCC8Q09428 1581 aa28.11■■■□□ 2.09
VPS39-203ENST00000561797 DNMBPQ6XZF7 1577 aa28.11■■■□□ 2.09
VPS39-203ENST00000561797 IFT140Q96RY7 1462 aa28.02■■■□□ 2.08
VPS39-203ENST00000561797 ZNF608Q9ULD9 1512 aaPredicted RBP27.96■■■□□ 2.07
VPS39-203ENST00000561797 TARBP1Q13395 1621 aaKnown RBP27.89■■■□□ 2.06
VPS39-203ENST00000561797 POLA1P09884 1462 aaPredicted RBP27.89■■■□□ 2.05
VPS39-203ENST00000561797 EIF4G3O43432 1585 aaKnown RBP27.86■■■□□ 2.05
VPS39-203ENST00000561797 CUX1P39880 1505 aa27.86■■■□□ 2.05
VPS39-203ENST00000561797 RAD54L2Q9Y4B4 1467 aa27.81■■■□□ 2.04
VPS39-203ENST00000561797 FGD5Q6ZNL6 1462 aa27.8■■■□□ 2.04
VPS39-203ENST00000561797 SOGA1O94964 1423 aa27.77■■■□□ 2.04
VPS39-203ENST00000561797 AQRO60306 1485 aaKnown RBP eCLIP27.76■■■□□ 2.04
VPS39-203ENST00000561797 OSCARQ8IYS5 282 aa27.74■■■□□ 2.03
VPS39-203ENST00000561797 TDRD9Q8NDG6 1382 aaKnown RBP27.67■■■□□ 2.02
VPS39-203ENST00000561797 CHD1O14646 1710 aa27.65■■■□□ 2.02
VPS39-203ENST00000561797 WDR97A6NE52 1622 aa27.63■■■□□ 2.01
VPS39-203ENST00000561797 BIVM-ERCC5R4GMW8 1640 aa27.58■■■□□ 2.01
VPS39-203ENST00000561797 WRNQ14191 1432 aaPredicted RBP eCLIP27.55■■■□□ 2
VPS39-203ENST00000561797 SYNJ1O43426 1573 aa27.55■■■□□ 2
VPS39-203ENST00000561797 TOP2BQ02880 1626 aa27.55■■■□□ 2
VPS39-203ENST00000561797 FBLN2P98095 1184 aa27.53■■■□□ 2
VPS39-203ENST00000561797 PBRM1Q86U86 1689 aa27.52■■■□□ 2
VPS39-203ENST00000561797 SNAPC4Q5SXM2 1469 aa27.5■■□□□ 1.99
VPS39-203ENST00000561797 ABCA10Q8WWZ4 1543 aa27.48■■□□□ 1.99
VPS39-203ENST00000561797 GRIN2BQ13224 1484 aa27.47■■□□□ 1.99
VPS39-203ENST00000561797 GAPVD1Q14C86 1478 aa27.45■■□□□ 1.99
VPS39-203ENST00000561797 TRIM41Q8WV44 630 aa27.45■■□□□ 1.98
VPS39-203ENST00000561797 ABCA5Q8WWZ7 1642 aa27.45■■□□□ 1.98
VPS39-203ENST00000561797 MAGI1Q96QZ7 1491 aaPredicted RBP27.41■■□□□ 1.98
VPS39-203ENST00000561797 RIMBP3CA6NJZ7 1639 aa27.41■■□□□ 1.98
VPS39-203ENST00000561797 RIMBP3BA6NNM3 1639 aa27.41■■□□□ 1.98
VPS39-203ENST00000561797 RIMBP3Q9UFD9 1639 aa27.41■■□□□ 1.98
VPS39-203ENST00000561797 CHMP7Q8WUX9 453 aaPredicted RBP27.36■■□□□ 1.97
VPS39-203ENST00000561797 SYNJ2O15056 1496 aa27.32■■□□□ 1.96
VPS39-203ENST00000561797 ARHGEF11O15085 1522 aa27.31■■□□□ 1.96
VPS39-203ENST00000561797 CLASP1Q7Z460 1538 aa27.21■■□□□ 1.95
VPS39-203ENST00000561797 ADAMTS12P58397 1594 aa27.2■■□□□ 1.94
VPS39-203ENST00000561797 ERICH3Q5RHP9 1530 aa27.16■■□□□ 1.94
VPS39-203ENST00000561797 GRIN2AQ12879 1464 aa27.13■■□□□ 1.93
VPS39-203ENST00000561797 CYB5RLQ6IPT4 315 aa27.1■■□□□ 1.93
VPS39-203ENST00000561797 FHAD1B1AJZ9 1412 aa27.09■■□□□ 1.93
VPS39-203ENST00000561797 ARAP1Q96P48 1450 aa27.06■■□□□ 1.92
VPS39-203ENST00000561797 CEP170Q5SW79 1584 aa27.04■■□□□ 1.92
VPS39-203ENST00000561797 NUP160Q12769 1436 aa26.99■■□□□ 1.91
VPS39-203ENST00000561797 KIF27Q86VH2 1401 aa26.99■■□□□ 1.91
VPS39-203ENST00000561797 CUL7Q14999 1698 aa26.91■■□□□ 1.9
VPS39-203ENST00000561797 IGF1RP08069 1367 aa26.9■■□□□ 1.9
VPS39-203ENST00000561797 ERCC6L2Q5T890 1561 aa26.88■■□□□ 1.89
VPS39-203ENST00000561797 SHROOM2Q13796 1616 aa26.87■■□□□ 1.89
VPS39-203ENST00000561797 RUSC2Q8N2Y8 1516 aa26.8■■□□□ 1.88
VPS39-203ENST00000561797 CARMIL1Q5VZK9 1371 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms