RNA–Protein interactions for RNA: ENST00000561630.1

CDR2-202, Transcript of cerebellar degeneration related protein 2, humanhuman

TSL 5

Gene CDR2, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDR2-202ENST00000561630 NISCHQ9Y2I1 1504 aa58.5■■■■■ 6.96
CDR2-202ENST00000561630 CCDC180Q9P1Z9 1646 aa52.08■■■■■ 5.93
CDR2-202ENST00000561630 ABCC9O60706 1549 aa51.38■■■■■ 5.82
CDR2-202ENST00000561630 RB1CC1Q8TDY2 1594 aa49.24■■■■■ 5.47
CDR2-202ENST00000561630 NACADO15069 1562 aa49.11■■■■■ 5.45
CDR2-202ENST00000561630 DCAF8L2P0C7V8 631 aa49.04■■■■■ 5.44
CDR2-202ENST00000561630 MYO15BQ96JP2 1530 aa48.75■■■■■ 5.39
CDR2-202ENST00000561630 ZCCHC6Q5VYS8 1495 aaKnown RBP48.65■■■■■ 5.38
CDR2-202ENST00000561630 DCAF1Q9Y4B6 1507 aa48.39■■■■■ 5.34
CDR2-202ENST00000561630 PABPN1Q86U42 306 aaKnown RBP eCLIP48■■■■■ 5.27
CDR2-202ENST00000561630 UNC13AQ9UPW8 1703 aa47.99■■■■■ 5.27
CDR2-202ENST00000561630 BICRAQ9NZM4 1560 aa47.78■■■■■ 5.24
CDR2-202ENST00000561630 DNAJC5BQ9UF47 199 aa47.57■■■■■ 5.21
CDR2-202ENST00000561630 SCRIBQ14160 1630 aa47.51■■■■■ 5.2
CDR2-202ENST00000561630 SHROOM4Q9ULL8 1493 aa47.28■■■■■ 5.16
CDR2-202ENST00000561630 EIF4G1Q04637 1599 aaKnown RBP46.55■■■■■ 5.04
CDR2-202ENST00000561630 CC2D2AQ9P2K1 1620 aa46.43■■■■■ 5.02
CDR2-202ENST00000561630 CECR2Q9BXF3 1484 aa46.23■■■■■ 4.99
CDR2-202ENST00000561630 SMARCA4P51532 1647 aa45.42■■■■■ 4.86
CDR2-202ENST00000561630 NCAPD3P42695 1498 aa45.38■■■■■ 4.86
CDR2-202ENST00000561630 BAZ1AQ9NRL2 1556 aaPredicted RBP45.34■■■■■ 4.85
CDR2-202ENST00000561630 ATAD2BQ9ULI0 1458 aa45.33■■■■■ 4.85
CDR2-202ENST00000561630 SMARCA2P51531 1590 aa45.23■■■■■ 4.83
CDR2-202ENST00000561630 HMGXB3Q12766 1538 aa45.07■■■■■ 4.81
CDR2-202ENST00000561630 MROH2BQ7Z745 1585 aa45.07■■■■■ 4.8
CDR2-202ENST00000561630 PEG3Q9GZU2 1588 aa45.02■■■■■ 4.8
CDR2-202ENST00000561630 BAZ1BQ9UIG0 1483 aaKnown RBP44.91■■■■■ 4.78
CDR2-202ENST00000561630 WIZO95785 1651 aa44.5■■■■■ 4.71
CDR2-202ENST00000561630 RSF1Q96T23 1441 aaPredicted RBP44.46■■■■■ 4.71
CDR2-202ENST00000561630 NESP48681 1621 aa44.36■■■■■ 4.69
CDR2-202ENST00000561630 ERCC6Q03468 1493 aa44.32■■■■■ 4.69
CDR2-202ENST00000561630 LAMC3Q9Y6N6 1575 aa44.18■■■■■ 4.66
CDR2-202ENST00000561630 TOP2AP11388 1531 aaKnown RBP44.05■■■■■ 4.64
CDR2-202ENST00000561630 CADPSQ9ULU8 1353 aa44.05■■■■■ 4.64
CDR2-202ENST00000561630 CUX2O14529 1486 aa44.01■■■■■ 4.64
CDR2-202ENST00000561630 PDS5BQ9NTI5 1447 aa43.95■■■■■ 4.63
CDR2-202ENST00000561630 KIF21AQ7Z4S6 1674 aa43.72■■■■■ 4.59
CDR2-202ENST00000561630 THOC2Q8NI27 1593 aaKnown RBP43.72■■■■■ 4.59
CDR2-202ENST00000561630 CFTRP13569 1480 aa43.7■■■■■ 4.59
CDR2-202ENST00000561630 CCDC88BA6NC98 1476 aa43.57■■■■■ 4.56
CDR2-202ENST00000561630 FANCD2Q9BXW9 1451 aa43.5■■■■■ 4.55
CDR2-202ENST00000561630 MRC2Q9UBG0 1479 aa43.5■■■■■ 4.55
CDR2-202ENST00000561630 CEP164Q9UPV0 1460 aa43.47■■■■■ 4.55
CDR2-202ENST00000561630 WDR62O43379 1518 aa43.35■■■■■ 4.53
CDR2-202ENST00000561630 DNAJC5Q9H3Z4 198 aa43.14■■■■■ 4.5
CDR2-202ENST00000561630 PRDM2Q13029 1718 aa43.13■■■■■ 4.49
CDR2-202ENST00000561630 URB2Q14146 1524 aaKnown RBP43.08■■■■■ 4.49
CDR2-202ENST00000561630 SUPT5HO00267 1087 aaKnown RBP43.04■■■■■ 4.48
CDR2-202ENST00000561630 TOPBP1Q92547 1522 aa42.76■■■■■ 4.44
CDR2-202ENST00000561630 ABCC8Q09428 1581 aa42.74■■■■■ 4.43
CDR2-202ENST00000561630 DNMBPQ6XZF7 1577 aa42.65■■■■■ 4.42
CDR2-202ENST00000561630 IFT140Q96RY7 1462 aa42.6■■■■■ 4.41
CDR2-202ENST00000561630 ZNF608Q9ULD9 1512 aaPredicted RBP42.43■■■■■ 4.38
CDR2-202ENST00000561630 POLA1P09884 1462 aaPredicted RBP42.38■■■■■ 4.38
CDR2-202ENST00000561630 TARBP1Q13395 1621 aaKnown RBP42.3■■■■■ 4.36
CDR2-202ENST00000561630 CUX1P39880 1505 aa42.3■■■■■ 4.36
CDR2-202ENST00000561630 SOGA1O94964 1423 aa42.22■■■■■ 4.35
CDR2-202ENST00000561630 FGD5Q6ZNL6 1462 aa42.21■■■■■ 4.35
CDR2-202ENST00000561630 RAD54L2Q9Y4B4 1467 aa42.2■■■■■ 4.35
CDR2-202ENST00000561630 EIF4G3O43432 1585 aaKnown RBP42.18■■■■■ 4.34
CDR2-202ENST00000561630 AQRO60306 1485 aaKnown RBP eCLIP42.17■■■■■ 4.344e-10■■■□□ 17.2
CDR2-202ENST00000561630 OSCARQ8IYS5 282 aa42.16■■■■■ 4.34
CDR2-202ENST00000561630 TDRD9Q8NDG6 1382 aaKnown RBP42.03■■■■■ 4.32
CDR2-202ENST00000561630 WDR97A6NE52 1622 aa41.93■■■■■ 4.3
CDR2-202ENST00000561630 WRNQ14191 1432 aaPredicted RBP eCLIP41.91■■■■■ 4.3
CDR2-202ENST00000561630 TOP2BQ02880 1626 aa41.81■■■■■ 4.28
CDR2-202ENST00000561630 ABCA10Q8WWZ4 1543 aa41.8■■■■■ 4.28
CDR2-202ENST00000561630 BIVM-ERCC5R4GMW8 1640 aa41.78■■■■■ 4.28
CDR2-202ENST00000561630 SYNJ1O43426 1573 aa41.78■■■■■ 4.28
CDR2-202ENST00000561630 GRIN2BQ13224 1484 aa41.76■■■■■ 4.28
CDR2-202ENST00000561630 SNAPC4Q5SXM2 1469 aa41.73■■■■■ 4.27
CDR2-202ENST00000561630 FBLN2P98095 1184 aa41.73■■■■■ 4.27
CDR2-202ENST00000561630 GAPVD1Q14C86 1478 aa41.71■■■■■ 4.27
CDR2-202ENST00000561630 MAGI1Q96QZ7 1491 aaPredicted RBP41.68■■■■■ 4.26
CDR2-202ENST00000561630 CHD1O14646 1710 aa41.66■■■■■ 4.26
CDR2-202ENST00000561630 ABCA5Q8WWZ7 1642 aa41.62■■■■■ 4.25
CDR2-202ENST00000561630 CHMP7Q8WUX9 453 aaPredicted RBP41.57■■■■■ 4.25
CDR2-202ENST00000561630 SYNJ2O15056 1496 aa41.53■■■■■ 4.24
CDR2-202ENST00000561630 PBRM1Q86U86 1689 aa41.52■■■■■ 4.24
CDR2-202ENST00000561630 TRIM41Q8WV44 630 aa41.51■■■■■ 4.24
CDR2-202ENST00000561630 ARHGEF11O15085 1522 aa41.42■■■■■ 4.22
CDR2-202ENST00000561630 RIMBP3CA6NJZ7 1639 aa41.41■■■■■ 4.22
CDR2-202ENST00000561630 RIMBP3BA6NNM3 1639 aa41.41■■■■■ 4.22
CDR2-202ENST00000561630 RIMBP3Q9UFD9 1639 aa41.41■■■■■ 4.22
CDR2-202ENST00000561630 CLASP1Q7Z460 1538 aa41.31■■■■■ 4.2
CDR2-202ENST00000561630 ERICH3Q5RHP9 1530 aa41.28■■■■■ 4.2
CDR2-202ENST00000561630 ADAMTS12P58397 1594 aa41.25■■■■■ 4.19
CDR2-202ENST00000561630 FHAD1B1AJZ9 1412 aa41.23■■■■■ 4.19
CDR2-202ENST00000561630 GRIN2AQ12879 1464 aa41.21■■■■■ 4.19
CDR2-202ENST00000561630 CYB5RLQ6IPT4 315 aa41.1■■■■■ 4.17
CDR2-202ENST00000561630 KIF27Q86VH2 1401 aa41.08■■■■■ 4.17
CDR2-202ENST00000561630 NUP160Q12769 1436 aa41.07■■■■■ 4.16
CDR2-202ENST00000561630 ARAP1Q96P48 1450 aa41.07■■■■■ 4.16
CDR2-202ENST00000561630 CEP170Q5SW79 1584 aa40.99■■■■■ 4.15
CDR2-202ENST00000561630 IGF1RP08069 1367 aa40.99■■■■■ 4.15
CDR2-202ENST00000561630 CUL7Q14999 1698 aa40.78■■■■■ 4.12
CDR2-202ENST00000561630 SHROOM2Q13796 1616 aa40.74■■■■■ 4.11
CDR2-202ENST00000561630 CARMIL1Q5VZK9 1371 aa40.72■■■■■ 4.11
CDR2-202ENST00000561630 ERCC6L2Q5T890 1561 aa40.69■■■■■ 4.11
CDR2-202ENST00000561630 JPH4Q96JJ6 628 aa40.67■■■■■ 4.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms