RNA–Protein interactions for RNA: ENST00000561425.5

TPM1-232, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-232ENST00000561425 NISCHQ9Y2I1 1504 aa50.92■■■■■ 5.74
TPM1-232ENST00000561425 CCDC180Q9P1Z9 1646 aa45.33■■■■■ 4.85
TPM1-232ENST00000561425 ABCC9O60706 1549 aa44.67■■■■■ 4.74
TPM1-232ENST00000561425 RB1CC1Q8TDY2 1594 aa42.84■■■■■ 4.45
TPM1-232ENST00000561425 NACADO15069 1562 aa42.77■■■■■ 4.44
TPM1-232ENST00000561425 DCAF8L2P0C7V8 631 aa42.55■■■■■ 4.4
TPM1-232ENST00000561425 MYO15BQ96JP2 1530 aa42.51■■■■■ 4.39
TPM1-232ENST00000561425 ZCCHC6Q5VYS8 1495 aaKnown RBP42.34■■■■■ 4.37
TPM1-232ENST00000561425 DCAF1Q9Y4B6 1507 aa42.18■■■■■ 4.34
TPM1-232ENST00000561425 UNC13AQ9UPW8 1703 aa41.78■■■■■ 4.28
TPM1-232ENST00000561425 PABPN1Q86U42 306 aaKnown RBP eCLIP41.73■■■■■ 4.27
TPM1-232ENST00000561425 BICRAQ9NZM4 1560 aa41.63■■■■■ 4.25
TPM1-232ENST00000561425 DNAJC5BQ9UF47 199 aa41.47■■■■■ 4.23
TPM1-232ENST00000561425 SCRIBQ14160 1630 aa41.26■■■■■ 4.19
TPM1-232ENST00000561425 SHROOM4Q9ULL8 1493 aa41.18■■■■■ 4.18
TPM1-232ENST00000561425 EIF4G1Q04637 1599 aaKnown RBP40.51■■■■■ 4.08
TPM1-232ENST00000561425 CC2D2AQ9P2K1 1620 aa40.41■■■■■ 4.06
TPM1-232ENST00000561425 CECR2Q9BXF3 1484 aa40.21■■■■■ 4.03
TPM1-232ENST00000561425 NCAPD3P42695 1498 aa39.55■■■■□ 3.92
TPM1-232ENST00000561425 SMARCA4P51532 1647 aa39.51■■■■□ 3.92
TPM1-232ENST00000561425 ATAD2BQ9ULI0 1458 aa39.47■■■■□ 3.91
TPM1-232ENST00000561425 BAZ1AQ9NRL2 1556 aaPredicted RBP39.44■■■■□ 3.9
TPM1-232ENST00000561425 SMARCA2P51531 1590 aa39.33■■■■□ 3.89
TPM1-232ENST00000561425 PEG3Q9GZU2 1588 aa39.23■■■■□ 3.87
TPM1-232ENST00000561425 HMGXB3Q12766 1538 aa39.23■■■■□ 3.87
TPM1-232ENST00000561425 MROH2BQ7Z745 1585 aa39.21■■■■□ 3.87
TPM1-232ENST00000561425 BAZ1BQ9UIG0 1483 aaKnown RBP39.04■■■■□ 3.84
TPM1-232ENST00000561425 WIZO95785 1651 aa38.71■■■■□ 3.79
TPM1-232ENST00000561425 RSF1Q96T23 1441 aaPredicted RBP38.7■■■■□ 3.79
TPM1-232ENST00000561425 NESP48681 1621 aa38.59■■■■□ 3.77
TPM1-232ENST00000561425 ERCC6Q03468 1493 aa38.47■■■■□ 3.75
TPM1-232ENST00000561425 LAMC3Q9Y6N6 1575 aa38.44■■■■□ 3.74
TPM1-232ENST00000561425 CADPSQ9ULU8 1353 aa38.34■■■■□ 3.73
TPM1-232ENST00000561425 TOP2AP11388 1531 aaKnown RBP38.32■■■■□ 3.72
TPM1-232ENST00000561425 CUX2O14529 1486 aa38.3■■■■□ 3.72
TPM1-232ENST00000561425 PDS5BQ9NTI5 1447 aa38.23■■■■□ 3.71
TPM1-232ENST00000561425 THOC2Q8NI27 1593 aaKnown RBP38.06■■■■□ 3.68
TPM1-232ENST00000561425 CFTRP13569 1480 aa38.05■■■■□ 3.68
TPM1-232ENST00000561425 KIF21AQ7Z4S6 1674 aa38.01■■■■□ 3.68
TPM1-232ENST00000561425 CCDC88BA6NC98 1476 aa37.92■■■■□ 3.66
TPM1-232ENST00000561425 FANCD2Q9BXW9 1451 aa37.84■■■■□ 3.65
TPM1-232ENST00000561425 MRC2Q9UBG0 1479 aa37.83■■■■□ 3.65
TPM1-232ENST00000561425 CEP164Q9UPV0 1460 aa37.78■■■■□ 3.64
TPM1-232ENST00000561425 WDR62O43379 1518 aa37.73■■■■□ 3.63
TPM1-232ENST00000561425 DNAJC5Q9H3Z4 198 aa37.61■■■■□ 3.61
TPM1-232ENST00000561425 PRDM2Q13029 1718 aa37.53■■■■□ 3.6
TPM1-232ENST00000561425 URB2Q14146 1524 aaKnown RBP37.5■■■■□ 3.59
TPM1-232ENST00000561425 SUPT5HO00267 1087 aaKnown RBP37.33■■■■□ 3.57
TPM1-232ENST00000561425 ABCC8Q09428 1581 aa37.21■■■■□ 3.55
TPM1-232ENST00000561425 TOPBP1Q92547 1522 aa37.2■■■■□ 3.55
TPM1-232ENST00000561425 DNMBPQ6XZF7 1577 aa37.09■■■■□ 3.53
TPM1-232ENST00000561425 IFT140Q96RY7 1462 aa37.06■■■■□ 3.52
TPM1-232ENST00000561425 ZNF608Q9ULD9 1512 aaPredicted RBP36.91■■■■□ 3.5
TPM1-232ENST00000561425 POLA1P09884 1462 aaPredicted RBP36.87■■■■□ 3.49
TPM1-232ENST00000561425 TARBP1Q13395 1621 aaKnown RBP36.81■■■■□ 3.48
TPM1-232ENST00000561425 CUX1P39880 1505 aa36.8■■■■□ 3.48
TPM1-232ENST00000561425 SOGA1O94964 1423 aa36.73■■■■□ 3.47
TPM1-232ENST00000561425 FGD5Q6ZNL6 1462 aa36.7■■■■□ 3.47
TPM1-232ENST00000561425 RAD54L2Q9Y4B4 1467 aa36.7■■■■□ 3.47
TPM1-232ENST00000561425 OSCARQ8IYS5 282 aa36.69■■■■□ 3.46
TPM1-232ENST00000561425 AQRO60306 1485 aaKnown RBP eCLIP36.67■■■■□ 3.462e-12■■■■□ 26.1
TPM1-232ENST00000561425 EIF4G3O43432 1585 aaKnown RBP36.66■■■■□ 3.46
TPM1-232ENST00000561425 TDRD9Q8NDG6 1382 aaKnown RBP36.55■■■■□ 3.44
TPM1-232ENST00000561425 WDR97A6NE52 1622 aa36.51■■■■□ 3.43
TPM1-232ENST00000561425 WRNQ14191 1432 aaPredicted RBP eCLIP36.43■■■■□ 3.42
TPM1-232ENST00000561425 ABCA10Q8WWZ4 1543 aa36.39■■■■□ 3.42
TPM1-232ENST00000561425 TOP2BQ02880 1626 aa36.37■■■■□ 3.41
TPM1-232ENST00000561425 BIVM-ERCC5R4GMW8 1640 aa36.34■■■■□ 3.41
TPM1-232ENST00000561425 SYNJ1O43426 1573 aa36.32■■■■□ 3.41
TPM1-232ENST00000561425 GRIN2BQ13224 1484 aa36.31■■■■□ 3.4
TPM1-232ENST00000561425 GAPVD1Q14C86 1478 aa36.27■■■■□ 3.4
TPM1-232ENST00000561425 SNAPC4Q5SXM2 1469 aa36.27■■■■□ 3.4
TPM1-232ENST00000561425 MAGI1Q96QZ7 1491 aaPredicted RBP36.25■■■■□ 3.39
TPM1-232ENST00000561425 CHD1O14646 1710 aa36.22■■■■□ 3.39
TPM1-232ENST00000561425 FBLN2P98095 1184 aa36.21■■■■□ 3.39
TPM1-232ENST00000561425 ABCA5Q8WWZ7 1642 aa36.21■■■■□ 3.39
TPM1-232ENST00000561425 SYNJ2O15056 1496 aa36.12■■■■□ 3.37
TPM1-232ENST00000561425 CHMP7Q8WUX9 453 aaPredicted RBP36.12■■■■□ 3.37
TPM1-232ENST00000561425 PBRM1Q86U86 1689 aa36.09■■■■□ 3.37
TPM1-232ENST00000561425 TRIM41Q8WV44 630 aa36.04■■■■□ 3.36
TPM1-232ENST00000561425 ARHGEF11O15085 1522 aa36.03■■■■□ 3.36
TPM1-232ENST00000561425 RIMBP3CA6NJZ7 1639 aa36.03■■■■□ 3.36
TPM1-232ENST00000561425 RIMBP3BA6NNM3 1639 aa36.03■■■■□ 3.36
TPM1-232ENST00000561425 RIMBP3Q9UFD9 1639 aa36.03■■■■□ 3.36
TPM1-232ENST00000561425 CLASP1Q7Z460 1538 aa35.97■■■■□ 3.35
TPM1-232ENST00000561425 ERICH3Q5RHP9 1530 aa35.93■■■■□ 3.34
TPM1-232ENST00000561425 ADAMTS12P58397 1594 aa35.86■■■■□ 3.33
TPM1-232ENST00000561425 FHAD1B1AJZ9 1412 aa35.86■■■■□ 3.33
TPM1-232ENST00000561425 GRIN2AQ12879 1464 aa35.84■■■■□ 3.33
TPM1-232ENST00000561425 NUP160Q12769 1436 aa35.76■■■■□ 3.32
TPM1-232ENST00000561425 ARAP1Q96P48 1450 aa35.73■■■■□ 3.31
TPM1-232ENST00000561425 CYB5RLQ6IPT4 315 aa35.73■■■■□ 3.31
TPM1-232ENST00000561425 IGF1RP08069 1367 aa35.7■■■■□ 3.31
TPM1-232ENST00000561425 KIF27Q86VH2 1401 aa35.7■■■■□ 3.31
TPM1-232ENST00000561425 CEP170Q5SW79 1584 aa35.66■■■■□ 3.3
TPM1-232ENST00000561425 SHROOM2Q13796 1616 aa35.47■■■■□ 3.27
TPM1-232ENST00000561425 CUL7Q14999 1698 aa35.45■■■■□ 3.27
TPM1-232ENST00000561425 ERCC6L2Q5T890 1561 aa35.41■■■■□ 3.26
TPM1-232ENST00000561425 CARMIL1Q5VZK9 1371 aa35.4■■■■□ 3.26
TPM1-232ENST00000561425 JPH4Q96JJ6 628 aa35.4■■■■□ 3.26
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms