RNA–Protein interactions for RNA: ENST00000561354.1

CARMIL3-204, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 4

Gene CARMIL3, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-204ENST00000561354 NISCHQ9Y2I1 1504 aa29.86■■■□□ 2.37
CARMIL3-204ENST00000561354 ABCC9O60706 1549 aa26.93■■□□□ 1.9
CARMIL3-204ENST00000561354 CCDC180Q9P1Z9 1646 aa26.84■■□□□ 1.89
CARMIL3-204ENST00000561354 RB1CC1Q8TDY2 1594 aa25.61■■□□□ 1.69
CARMIL3-204ENST00000561354 NACADO15069 1562 aa25.43■■□□□ 1.66
CARMIL3-204ENST00000561354 DNAJC5BQ9UF47 199 aa25.39■■□□□ 1.66
CARMIL3-204ENST00000561354 DCAF8L2P0C7V8 631 aa25.22■■□□□ 1.63
CARMIL3-204ENST00000561354 MYO15BQ96JP2 1530 aa25.08■■□□□ 1.61
CARMIL3-204ENST00000561354 PABPN1Q86U42 306 aaKnown RBP eCLIP25.05■■□□□ 1.6
CARMIL3-204ENST00000561354 UNC13AQ9UPW8 1703 aa24.98■■□□□ 1.59
CARMIL3-204ENST00000561354 BICRAQ9NZM4 1560 aa24.86■■□□□ 1.57
CARMIL3-204ENST00000561354 ZCCHC6Q5VYS8 1495 aaKnown RBP24.72■■□□□ 1.55
CARMIL3-204ENST00000561354 DCAF1Q9Y4B6 1507 aa24.7■■□□□ 1.54
CARMIL3-204ENST00000561354 SHROOM4Q9ULL8 1493 aa24.57■■□□□ 1.52
CARMIL3-204ENST00000561354 SCRIBQ14160 1630 aa24.39■■□□□ 1.5
CARMIL3-204ENST00000561354 CC2D2AQ9P2K1 1620 aa24.33■■□□□ 1.49
CARMIL3-204ENST00000561354 CECR2Q9BXF3 1484 aa24.29■■□□□ 1.48
CARMIL3-204ENST00000561354 EIF4G1Q04637 1599 aaKnown RBP24.26■■□□□ 1.47
CARMIL3-204ENST00000561354 NCAPD3P42695 1498 aa23.49■■□□□ 1.35
CARMIL3-204ENST00000561354 DNAJC5Q9H3Z4 198 aa23.43■■□□□ 1.34
CARMIL3-204ENST00000561354 ATAD2BQ9ULI0 1458 aa23.38■■□□□ 1.33
CARMIL3-204ENST00000561354 SMARCA2P51531 1590 aa23.31■■□□□ 1.32
CARMIL3-204ENST00000561354 SMARCA4P51532 1647 aa23.3■■□□□ 1.32
CARMIL3-204ENST00000561354 CUX2O14529 1486 aa23.3■■□□□ 1.32
CARMIL3-204ENST00000561354 HMGXB3Q12766 1538 aa23.28■■□□□ 1.32
CARMIL3-204ENST00000561354 ERCC6Q03468 1493 aa23.26■■□□□ 1.31
CARMIL3-204ENST00000561354 BAZ1AQ9NRL2 1556 aaPredicted RBP23.18■■□□□ 1.3
CARMIL3-204ENST00000561354 BAZ1BQ9UIG0 1483 aaKnown RBP23.13■■□□□ 1.29
CARMIL3-204ENST00000561354 PEG3Q9GZU2 1588 aa23.11■■□□□ 1.29
CARMIL3-204ENST00000561354 NESP48681 1621 aa23.09■■□□□ 1.29
CARMIL3-204ENST00000561354 MROH2BQ7Z745 1585 aa22.99■■□□□ 1.27
CARMIL3-204ENST00000561354 LAMC3Q9Y6N6 1575 aa22.95■■□□□ 1.26
CARMIL3-204ENST00000561354 THOC2Q8NI27 1593 aaKnown RBP22.89■■□□□ 1.26
CARMIL3-204ENST00000561354 PDS5BQ9NTI5 1447 aa22.83■■□□□ 1.25
CARMIL3-204ENST00000561354 KIF21AQ7Z4S6 1674 aa22.77■■□□□ 1.24
CARMIL3-204ENST00000561354 CADPSQ9ULU8 1353 aa22.76■■□□□ 1.23
CARMIL3-204ENST00000561354 WIZO95785 1651 aa22.68■■□□□ 1.22
CARMIL3-204ENST00000561354 MRC2Q9UBG0 1479 aa22.62■■□□□ 1.21
CARMIL3-204ENST00000561354 WDR62O43379 1518 aa22.58■■□□□ 1.21
CARMIL3-204ENST00000561354 CEP164Q9UPV0 1460 aa22.51■■□□□ 1.19
CARMIL3-204ENST00000561354 RSF1Q96T23 1441 aaPredicted RBP22.49■■□□□ 1.19
CARMIL3-204ENST00000561354 CFTRP13569 1480 aa22.47■■□□□ 1.19
CARMIL3-204ENST00000561354 FANCD2Q9BXW9 1451 aa22.47■■□□□ 1.19
CARMIL3-204ENST00000561354 TOP2AP11388 1531 aaKnown RBP22.42■■□□□ 1.18
CARMIL3-204ENST00000561354 TRIM41Q8WV44 630 aa22.29■■□□□ 1.16
CARMIL3-204ENST00000561354 URB2Q14146 1524 aaKnown RBP22.29■■□□□ 1.16
CARMIL3-204ENST00000561354 OSCARQ8IYS5 282 aa22.22■■□□□ 1.15
CARMIL3-204ENST00000561354 PRDM2Q13029 1718 aa22.19■■□□□ 1.14
CARMIL3-204ENST00000561354 CCDC88BA6NC98 1476 aa22.17■■□□□ 1.14
CARMIL3-204ENST00000561354 IFT140Q96RY7 1462 aa22.08■■□□□ 1.12
CARMIL3-204ENST00000561354 TOPBP1Q92547 1522 aa22.04■■□□□ 1.12
CARMIL3-204ENST00000561354 ABCC8Q09428 1581 aa22.03■■□□□ 1.12
CARMIL3-204ENST00000561354 ZNF608Q9ULD9 1512 aaPredicted RBP22.02■■□□□ 1.12
CARMIL3-204ENST00000561354 DNMBPQ6XZF7 1577 aa21.95■■□□□ 1.1
CARMIL3-204ENST00000561354 RIMBP3CA6NJZ7 1639 aa21.89■■□□□ 1.09
CARMIL3-204ENST00000561354 RIMBP3BA6NNM3 1639 aa21.89■■□□□ 1.09
CARMIL3-204ENST00000561354 RIMBP3Q9UFD9 1639 aa21.89■■□□□ 1.09
CARMIL3-204ENST00000561354 EIF4G3O43432 1585 aaKnown RBP21.89■■□□□ 1.09
CARMIL3-204ENST00000561354 TARBP1Q13395 1621 aaKnown RBP21.84■■□□□ 1.09
CARMIL3-204ENST00000561354 ARHGEF11O15085 1522 aa21.83■■□□□ 1.09
CARMIL3-204ENST00000561354 AQRO60306 1485 aaKnown RBP eCLIP21.82■■□□□ 1.08
CARMIL3-204ENST00000561354 POLA1P09884 1462 aaPredicted RBP21.81■■□□□ 1.08
CARMIL3-204ENST00000561354 CHD1O14646 1710 aa21.73■■□□□ 1.07
CARMIL3-204ENST00000561354 SOGA1O94964 1423 aa21.72■■□□□ 1.07
CARMIL3-204ENST00000561354 RAD54L2Q9Y4B4 1467 aa21.71■■□□□ 1.07
CARMIL3-204ENST00000561354 FBLN2P98095 1184 aa21.69■■□□□ 1.06
CARMIL3-204ENST00000561354 CYB5RLQ6IPT4 315 aa21.69■■□□□ 1.06
CARMIL3-204ENST00000561354 TDRD9Q8NDG6 1382 aaKnown RBP21.67■■□□□ 1.06
CARMIL3-204ENST00000561354 WDR97A6NE52 1622 aa21.65■■□□□ 1.06
CARMIL3-204ENST00000561354 FGD5Q6ZNL6 1462 aa21.64■■□□□ 1.06
CARMIL3-204ENST00000561354 CUX1P39880 1505 aa21.6■■□□□ 1.05
CARMIL3-204ENST00000561354 ARAP1Q96P48 1450 aa21.6■■□□□ 1.05
CARMIL3-204ENST00000561354 SNAPC4Q5SXM2 1469 aa21.58■■□□□ 1.05
CARMIL3-204ENST00000561354 MAGI1Q96QZ7 1491 aaPredicted RBP21.56■■□□□ 1.04
CARMIL3-204ENST00000561354 GRIN2BQ13224 1484 aa21.54■■□□□ 1.04
CARMIL3-204ENST00000561354 CHMP7Q8WUX9 453 aaPredicted RBP21.54■■□□□ 1.04
CARMIL3-204ENST00000561354 CLASP1Q7Z460 1538 aa21.52■■□□□ 1.04
CARMIL3-204ENST00000561354 SYNJ1O43426 1573 aa21.5■■□□□ 1.03
CARMIL3-204ENST00000561354 SYNJ2O15056 1496 aa21.48■■□□□ 1.03
CARMIL3-204ENST00000561354 TRHP20396 242 aaPredicted RBP21.47■■□□□ 1.03
CARMIL3-204ENST00000561354 GAPVD1Q14C86 1478 aa21.45■■□□□ 1.02
CARMIL3-204ENST00000561354 ABCA10Q8WWZ4 1543 aa21.41■■□□□ 1.02
CARMIL3-204ENST00000561354 PBRM1Q86U86 1689 aa21.4■■□□□ 1.02
CARMIL3-204ENST00000561354 ABCA5Q8WWZ7 1642 aa21.37■■□□□ 1.01
CARMIL3-204ENST00000561354 SUPT5HO00267 1087 aaKnown RBP21.37■■□□□ 1.01
CARMIL3-204ENST00000561354 WRNQ14191 1432 aaPredicted RBP eCLIP21.3■■□□□ 1
CARMIL3-204ENST00000561354 GRIN2AQ12879 1464 aa21.26■□□□□ 0.99
CARMIL3-204ENST00000561354 TOP2BQ02880 1626 aa21.23■□□□□ 0.99
CARMIL3-204ENST00000561354 BIVM-ERCC5R4GMW8 1640 aa21.23■□□□□ 0.99
CARMIL3-204ENST00000561354 ADAMTS12P58397 1594 aa21.21■□□□□ 0.99
CARMIL3-204ENST00000561354 NUP160Q12769 1436 aa21.21■□□□□ 0.99
CARMIL3-204ENST00000561354 FHAD1B1AJZ9 1412 aa21.18■□□□□ 0.98
CARMIL3-204ENST00000561354 CEP170Q5SW79 1584 aa21.17■□□□□ 0.98
CARMIL3-204ENST00000561354 ERCC6L2Q5T890 1561 aa21.14■□□□□ 0.98
CARMIL3-204ENST00000561354 ERICH3Q5RHP9 1530 aa21.14■□□□□ 0.98
CARMIL3-204ENST00000561354 SHROOM2Q13796 1616 aa21.11■□□□□ 0.97
CARMIL3-204ENST00000561354 PRG4Q92954 1404 aaPredicted RBP20.99■□□□□ 0.95
CARMIL3-204ENST00000561354 JPH4Q96JJ6 628 aa20.99■□□□□ 0.95
CARMIL3-204ENST00000561354 AEBP2Q6ZN18 517 aaPredicted RBP20.93■□□□□ 0.94
CARMIL3-204ENST00000561354 RUSC2Q8N2Y8 1516 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 468.7 ms