RNA–Protein interactions for RNA: ENST00000561348.1

HERC1-212, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-212ENST00000561348 NISCHQ9Y2I1 1504 aa24.29■■□□□ 1.48
HERC1-212ENST00000561348 CCDC180Q9P1Z9 1646 aa21.55■■□□□ 1.04
HERC1-212ENST00000561348 ABCC9O60706 1549 aa21.32■■□□□ 1
HERC1-212ENST00000561348 DCAF8L2P0C7V8 631 aa20.67■□□□□ 0.9
HERC1-212ENST00000561348 RB1CC1Q8TDY2 1594 aa20.37■□□□□ 0.85
HERC1-212ENST00000561348 AEBP2Q6ZN18 517 aaPredicted RBP20.3■□□□□ 0.84
HERC1-212ENST00000561348 NACADO15069 1562 aa20.29■□□□□ 0.84
HERC1-212ENST00000561348 ZCCHC6Q5VYS8 1495 aaKnown RBP20.19■□□□□ 0.82
HERC1-212ENST00000561348 MYO15BQ96JP2 1530 aa20.03■□□□□ 0.8
HERC1-212ENST00000561348 PABPN1Q86U42 306 aaKnown RBP eCLIP19.98■□□□□ 0.79
HERC1-212ENST00000561348 DCAF1Q9Y4B6 1507 aa19.97■□□□□ 0.79
HERC1-212ENST00000561348 CHIC1Q5VXU3 224 aa19.95■□□□□ 0.78
HERC1-212ENST00000561348 UNC13AQ9UPW8 1703 aa19.9■□□□□ 0.78
HERC1-212ENST00000561348 SCRIBQ14160 1630 aa19.84■□□□□ 0.77
HERC1-212ENST00000561348 BICRAQ9NZM4 1560 aa19.7■□□□□ 0.74
HERC1-212ENST00000561348 DNAJC5BQ9UF47 199 aa19.56■□□□□ 0.72
HERC1-212ENST00000561348 SHROOM4Q9ULL8 1493 aa19.45■□□□□ 0.7
HERC1-212ENST00000561348 EIF4G1Q04637 1599 aaKnown RBP19.23■□□□□ 0.67
HERC1-212ENST00000561348 CC2D2AQ9P2K1 1620 aa19.19■□□□□ 0.66
HERC1-212ENST00000561348 CECR2Q9BXF3 1484 aa19.09■□□□□ 0.65
HERC1-212ENST00000561348 SMARCA4P51532 1647 aa18.87■□□□□ 0.61
HERC1-212ENST00000561348 BAZ1AQ9NRL2 1556 aaPredicted RBP18.84■□□□□ 0.61
HERC1-212ENST00000561348 ATAD2BQ9ULI0 1458 aa18.77■□□□□ 0.59
HERC1-212ENST00000561348 MROH2BQ7Z745 1585 aa18.76■□□□□ 0.59
HERC1-212ENST00000561348 SMARCA2P51531 1590 aa18.73■□□□□ 0.59
HERC1-212ENST00000561348 NCAPD3P42695 1498 aa18.71■□□□□ 0.59
HERC1-212ENST00000561348 BAZ1BQ9UIG0 1483 aaKnown RBP18.67■□□□□ 0.58
HERC1-212ENST00000561348 WIZO95785 1651 aa18.6■□□□□ 0.57
HERC1-212ENST00000561348 HMGXB3Q12766 1538 aa18.6■□□□□ 0.57
HERC1-212ENST00000561348 PEG3Q9GZU2 1588 aa18.57■□□□□ 0.56
HERC1-212ENST00000561348 RSF1Q96T23 1441 aaPredicted RBP18.53■□□□□ 0.56
HERC1-212ENST00000561348 NESP48681 1621 aa18.41■□□□□ 0.54
HERC1-212ENST00000561348 ERCC6Q03468 1493 aa18.39■□□□□ 0.54
HERC1-212ENST00000561348 TOP2AP11388 1531 aaKnown RBP18.33■□□□□ 0.52
HERC1-212ENST00000561348 SUPT5HO00267 1087 aaKnown RBP18.31■□□□□ 0.52
HERC1-212ENST00000561348 LAMC3Q9Y6N6 1575 aa18.25■□□□□ 0.51
HERC1-212ENST00000561348 CADPSQ9ULU8 1353 aa18.24■□□□□ 0.51
HERC1-212ENST00000561348 PDS5BQ9NTI5 1447 aa18.19■□□□□ 0.5
HERC1-212ENST00000561348 CCDC88BA6NC98 1476 aa18.16■□□□□ 0.5
HERC1-212ENST00000561348 KIF21AQ7Z4S6 1674 aa18.15■□□□□ 0.5
HERC1-212ENST00000561348 CFTRP13569 1480 aa18.07■□□□□ 0.48
HERC1-212ENST00000561348 FANCD2Q9BXW9 1451 aa18.06■□□□□ 0.48
HERC1-212ENST00000561348 CUX2O14529 1486 aa18.04■□□□□ 0.48
HERC1-212ENST00000561348 CEP164Q9UPV0 1460 aa18.04■□□□□ 0.48
HERC1-212ENST00000561348 THOC2Q8NI27 1593 aaKnown RBP18.02■□□□□ 0.48
HERC1-212ENST00000561348 MRC2Q9UBG0 1479 aa17.99■□□□□ 0.47
HERC1-212ENST00000561348 PRDM2Q13029 1718 aa17.93■□□□□ 0.46
HERC1-212ENST00000561348 WDR62O43379 1518 aa17.88■□□□□ 0.45
HERC1-212ENST00000561348 URB2Q14146 1524 aaKnown RBP17.85■□□□□ 0.45
HERC1-212ENST00000561348 TOPBP1Q92547 1522 aa17.74■□□□□ 0.43
HERC1-212ENST00000561348 ABCC8Q09428 1581 aa17.7■□□□□ 0.42
HERC1-212ENST00000561348 DNMBPQ6XZF7 1577 aa17.7■□□□□ 0.42
HERC1-212ENST00000561348 IFT140Q96RY7 1462 aa17.62■□□□□ 0.41
HERC1-212ENST00000561348 DNAJC5Q9H3Z4 198 aa17.6■□□□□ 0.41
HERC1-212ENST00000561348 CUX1P39880 1505 aa17.6■□□□□ 0.41
HERC1-212ENST00000561348 ZNF608Q9ULD9 1512 aaPredicted RBP17.59■□□□□ 0.41
HERC1-212ENST00000561348 POLA1P09884 1462 aaPredicted RBP17.59■□□□□ 0.41
HERC1-212ENST00000561348 RAD54L2Q9Y4B4 1467 aa17.58■□□□□ 0.41
HERC1-212ENST00000561348 FGD5Q6ZNL6 1462 aa17.57■□□□□ 0.4
HERC1-212ENST00000561348 SOGA1O94964 1423 aa17.57■□□□□ 0.4
HERC1-212ENST00000561348 PHF23Q9BUL5 403 aaPredicted RBP17.54■□□□□ 0.4
HERC1-212ENST00000561348 AQRO60306 1485 aaKnown RBP eCLIP17.53■□□□□ 0.43e-7■■■■□ 25.4
HERC1-212ENST00000561348 TDRD9Q8NDG6 1382 aaKnown RBP17.52■□□□□ 0.39
HERC1-212ENST00000561348 WRNQ14191 1432 aaPredicted RBP eCLIP17.51■□□□□ 0.39
HERC1-212ENST00000561348 TARBP1Q13395 1621 aaKnown RBP17.5■□□□□ 0.39
HERC1-212ENST00000561348 EIF4G3O43432 1585 aaKnown RBP17.49■□□□□ 0.39
HERC1-212ENST00000561348 FBLN2P98095 1184 aa17.49■□□□□ 0.39
HERC1-212ENST00000561348 SYNJ1O43426 1573 aa17.45■□□□□ 0.38
HERC1-212ENST00000561348 OSCARQ8IYS5 282 aa17.43■□□□□ 0.38
HERC1-212ENST00000561348 TOP2BQ02880 1626 aa17.41■□□□□ 0.38
HERC1-212ENST00000561348 BIVM-ERCC5R4GMW8 1640 aa17.39■□□□□ 0.37
HERC1-212ENST00000561348 GAPVD1Q14C86 1478 aa17.34■□□□□ 0.37
HERC1-212ENST00000561348 SNAPC4Q5SXM2 1469 aa17.34■□□□□ 0.37
HERC1-212ENST00000561348 CHMP7Q8WUX9 453 aaPredicted RBP17.34■□□□□ 0.37
HERC1-212ENST00000561348 WDR97A6NE52 1622 aa17.33■□□□□ 0.37
HERC1-212ENST00000561348 ABCA10Q8WWZ4 1543 aa17.33■□□□□ 0.37
HERC1-212ENST00000561348 GRIN2BQ13224 1484 aa17.32■□□□□ 0.36
HERC1-212ENST00000561348 CHD1O14646 1710 aa17.31■□□□□ 0.36
HERC1-212ENST00000561348 PBRM1Q86U86 1689 aa17.29■□□□□ 0.36
HERC1-212ENST00000561348 SENP3Q9H4L4 574 aaPredicted RBP17.26■□□□□ 0.35
HERC1-212ENST00000561348 ABCA5Q8WWZ7 1642 aa17.25■□□□□ 0.35
HERC1-212ENST00000561348 TRIM41Q8WV44 630 aa17.24■□□□□ 0.35
HERC1-212ENST00000561348 MAGI1Q96QZ7 1491 aaPredicted RBP17.24■□□□□ 0.35
HERC1-212ENST00000561348 SYNJ2O15056 1496 aa17.2■□□□□ 0.34
HERC1-212ENST00000561348 KIF27Q86VH2 1401 aa17.15■□□□□ 0.34
HERC1-212ENST00000561348 ADAMTS12P58397 1594 aa17.12■□□□□ 0.33
HERC1-212ENST00000561348 ERICH3Q5RHP9 1530 aa17.11■□□□□ 0.33
HERC1-212ENST00000561348 FHAD1B1AJZ9 1412 aa17.11■□□□□ 0.33
HERC1-212ENST00000561348 GRIN2AQ12879 1464 aa17.1■□□□□ 0.33
HERC1-212ENST00000561348 RIMBP3CA6NJZ7 1639 aa17.09■□□□□ 0.33
HERC1-212ENST00000561348 RIMBP3BA6NNM3 1639 aa17.09■□□□□ 0.33
HERC1-212ENST00000561348 RIMBP3Q9UFD9 1639 aa17.09■□□□□ 0.33
HERC1-212ENST00000561348 ARHGEF11O15085 1522 aa17.07■□□□□ 0.32
HERC1-212ENST00000561348 CYB5RLQ6IPT4 315 aa17.07■□□□□ 0.32
HERC1-212ENST00000561348 IGF1RP08069 1367 aa17.05■□□□□ 0.32
HERC1-212ENST00000561348 CLASP1Q7Z460 1538 aa17.03■□□□□ 0.32
HERC1-212ENST00000561348 RUSC2Q8N2Y8 1516 aa17.03■□□□□ 0.32
HERC1-212ENST00000561348 CEP170Q5SW79 1584 aa17.02■□□□□ 0.31
HERC1-212ENST00000561348 CARMIL1Q5VZK9 1371 aa17■□□□□ 0.31
HERC1-212ENST00000561348 FAM9AQ8IZU1 332 aaPredicted RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms