RNA–Protein interactions for RNA: ENST00000561128.1

CHRNA3-208, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-208ENST00000561128 NISCHQ9Y2I1 1504 aa31.56■■■□□ 2.64
CHRNA3-208ENST00000561128 CCDC180Q9P1Z9 1646 aa28.18■■■□□ 2.1
CHRNA3-208ENST00000561128 ABCC9O60706 1549 aa27.83■■■□□ 2.05
CHRNA3-208ENST00000561128 RB1CC1Q8TDY2 1594 aa26.58■■□□□ 1.85
CHRNA3-208ENST00000561128 NACADO15069 1562 aa26.47■■□□□ 1.83
CHRNA3-208ENST00000561128 DCAF8L2P0C7V8 631 aa26.31■■□□□ 1.8
CHRNA3-208ENST00000561128 ZCCHC6Q5VYS8 1495 aaKnown RBP26.29■■□□□ 1.8
CHRNA3-208ENST00000561128 MYO15BQ96JP2 1530 aa26.21■■□□□ 1.79
CHRNA3-208ENST00000561128 UNC13AQ9UPW8 1703 aa26.16■■□□□ 1.78
CHRNA3-208ENST00000561128 DCAF1Q9Y4B6 1507 aa26.04■■□□□ 1.76
CHRNA3-208ENST00000561128 BICRAQ9NZM4 1560 aa25.95■■□□□ 1.74
CHRNA3-208ENST00000561128 PABPN1Q86U42 306 aaKnown RBP eCLIP25.92■■□□□ 1.74
CHRNA3-208ENST00000561128 DNAJC5BQ9UF47 199 aa25.8■■□□□ 1.72
CHRNA3-208ENST00000561128 SCRIBQ14160 1630 aa25.77■■□□□ 1.72
CHRNA3-208ENST00000561128 SHROOM4Q9ULL8 1493 aa25.43■■□□□ 1.66
CHRNA3-208ENST00000561128 EIF4G1Q04637 1599 aaKnown RBP25.2■■□□□ 1.62
CHRNA3-208ENST00000561128 CC2D2AQ9P2K1 1620 aa25.17■■□□□ 1.62
CHRNA3-208ENST00000561128 CECR2Q9BXF3 1484 aa24.98■■□□□ 1.59
CHRNA3-208ENST00000561128 SMARCA4P51532 1647 aa24.59■■□□□ 1.53
CHRNA3-208ENST00000561128 ATAD2BQ9ULI0 1458 aa24.47■■□□□ 1.51
CHRNA3-208ENST00000561128 NCAPD3P42695 1498 aa24.44■■□□□ 1.5
CHRNA3-208ENST00000561128 BAZ1AQ9NRL2 1556 aaPredicted RBP24.43■■□□□ 1.5
CHRNA3-208ENST00000561128 MROH2BQ7Z745 1585 aa24.4■■□□□ 1.5
CHRNA3-208ENST00000561128 SMARCA2P51531 1590 aa24.37■■□□□ 1.49
CHRNA3-208ENST00000561128 HMGXB3Q12766 1538 aa24.34■■□□□ 1.49
CHRNA3-208ENST00000561128 PEG3Q9GZU2 1588 aa24.31■■□□□ 1.48
CHRNA3-208ENST00000561128 BAZ1BQ9UIG0 1483 aaKnown RBP24.22■■□□□ 1.47
CHRNA3-208ENST00000561128 WIZO95785 1651 aa24.14■■□□□ 1.45
CHRNA3-208ENST00000561128 NESP48681 1621 aa24.08■■□□□ 1.45
CHRNA3-208ENST00000561128 RSF1Q96T23 1441 aaPredicted RBP23.96■■□□□ 1.43
CHRNA3-208ENST00000561128 ERCC6Q03468 1493 aa23.9■■□□□ 1.42
CHRNA3-208ENST00000561128 LAMC3Q9Y6N6 1575 aa23.84■■□□□ 1.41
CHRNA3-208ENST00000561128 TOP2AP11388 1531 aaKnown RBP23.8■■□□□ 1.4
CHRNA3-208ENST00000561128 KIF21AQ7Z4S6 1674 aa23.79■■□□□ 1.4
CHRNA3-208ENST00000561128 THOC2Q8NI27 1593 aaKnown RBP23.78■■□□□ 1.4
CHRNA3-208ENST00000561128 CUX2O14529 1486 aa23.74■■□□□ 1.39
CHRNA3-208ENST00000561128 CADPSQ9ULU8 1353 aa23.68■■□□□ 1.38
CHRNA3-208ENST00000561128 PDS5BQ9NTI5 1447 aa23.59■■□□□ 1.37
CHRNA3-208ENST00000561128 CFTRP13569 1480 aa23.55■■□□□ 1.36
CHRNA3-208ENST00000561128 CCDC88BA6NC98 1476 aa23.51■■□□□ 1.35
CHRNA3-208ENST00000561128 MRC2Q9UBG0 1479 aa23.49■■□□□ 1.35
CHRNA3-208ENST00000561128 FANCD2Q9BXW9 1451 aa23.48■■□□□ 1.35
CHRNA3-208ENST00000561128 WDR62O43379 1518 aa23.46■■□□□ 1.35
CHRNA3-208ENST00000561128 CEP164Q9UPV0 1460 aa23.46■■□□□ 1.35
CHRNA3-208ENST00000561128 PRDM2Q13029 1718 aa23.42■■□□□ 1.34
CHRNA3-208ENST00000561128 URB2Q14146 1524 aaKnown RBP23.34■■□□□ 1.33
CHRNA3-208ENST00000561128 DNAJC5Q9H3Z4 198 aa23.25■■□□□ 1.31
CHRNA3-208ENST00000561128 TOPBP1Q92547 1522 aa23.11■■□□□ 1.29
CHRNA3-208ENST00000561128 SUPT5HO00267 1087 aaKnown RBP23.09■■□□□ 1.29
CHRNA3-208ENST00000561128 DNMBPQ6XZF7 1577 aa23.05■■□□□ 1.28
CHRNA3-208ENST00000561128 ZNF608Q9ULD9 1512 aaPredicted RBP23■■□□□ 1.27
CHRNA3-208ENST00000561128 IFT140Q96RY7 1462 aa22.94■■□□□ 1.26
CHRNA3-208ENST00000561128 TARBP1Q13395 1621 aaKnown RBP22.92■■□□□ 1.26
CHRNA3-208ENST00000561128 ABCC8Q09428 1581 aa22.91■■□□□ 1.26
CHRNA3-208ENST00000561128 EIF4G3O43432 1585 aaKnown RBP22.9■■□□□ 1.26
CHRNA3-208ENST00000561128 CUX1P39880 1505 aa22.9■■□□□ 1.26
CHRNA3-208ENST00000561128 POLA1P09884 1462 aaPredicted RBP22.9■■□□□ 1.26
CHRNA3-208ENST00000561128 RAD54L2Q9Y4B4 1467 aa22.83■■□□□ 1.25
CHRNA3-208ENST00000561128 FGD5Q6ZNL6 1462 aa22.82■■□□□ 1.24
CHRNA3-208ENST00000561128 AQRO60306 1485 aaKnown RBP eCLIP22.77■■□□□ 1.24
CHRNA3-208ENST00000561128 WDR97A6NE52 1622 aa22.73■■□□□ 1.23
CHRNA3-208ENST00000561128 SOGA1O94964 1423 aa22.71■■□□□ 1.23
CHRNA3-208ENST00000561128 TDRD9Q8NDG6 1382 aaKnown RBP22.67■■□□□ 1.22
CHRNA3-208ENST00000561128 CHD1O14646 1710 aa22.67■■□□□ 1.22
CHRNA3-208ENST00000561128 SYNJ1O43426 1573 aa22.65■■□□□ 1.22
CHRNA3-208ENST00000561128 BIVM-ERCC5R4GMW8 1640 aa22.61■■□□□ 1.21
CHRNA3-208ENST00000561128 OSCARQ8IYS5 282 aa22.6■■□□□ 1.21
CHRNA3-208ENST00000561128 TOP2BQ02880 1626 aa22.58■■□□□ 1.21
CHRNA3-208ENST00000561128 SNAPC4Q5SXM2 1469 aa22.58■■□□□ 1.2
CHRNA3-208ENST00000561128 ABCA5Q8WWZ7 1642 aa22.56■■□□□ 1.2
CHRNA3-208ENST00000561128 PBRM1Q86U86 1689 aa22.55■■□□□ 1.2
CHRNA3-208ENST00000561128 WRNQ14191 1432 aaPredicted RBP eCLIP22.55■■□□□ 1.2
CHRNA3-208ENST00000561128 ABCA10Q8WWZ4 1543 aa22.54■■□□□ 1.2
CHRNA3-208ENST00000561128 RIMBP3CA6NJZ7 1639 aa22.5■■□□□ 1.19
CHRNA3-208ENST00000561128 RIMBP3BA6NNM3 1639 aa22.5■■□□□ 1.19
CHRNA3-208ENST00000561128 RIMBP3Q9UFD9 1639 aa22.5■■□□□ 1.19
CHRNA3-208ENST00000561128 GRIN2BQ13224 1484 aa22.49■■□□□ 1.19
CHRNA3-208ENST00000561128 GAPVD1Q14C86 1478 aa22.47■■□□□ 1.19
CHRNA3-208ENST00000561128 MAGI1Q96QZ7 1491 aaPredicted RBP22.46■■□□□ 1.19
CHRNA3-208ENST00000561128 ARHGEF11O15085 1522 aa22.43■■□□□ 1.18
CHRNA3-208ENST00000561128 TRIM41Q8WV44 630 aa22.42■■□□□ 1.18
CHRNA3-208ENST00000561128 FBLN2P98095 1184 aa22.41■■□□□ 1.18
CHRNA3-208ENST00000561128 CLASP1Q7Z460 1538 aa22.4■■□□□ 1.18
CHRNA3-208ENST00000561128 SYNJ2O15056 1496 aa22.38■■□□□ 1.17
CHRNA3-208ENST00000561128 ADAMTS12P58397 1594 aa22.36■■□□□ 1.17
CHRNA3-208ENST00000561128 ARAP1Q96P48 1450 aa22.28■■□□□ 1.16
CHRNA3-208ENST00000561128 CHMP7Q8WUX9 453 aaPredicted RBP22.27■■□□□ 1.16
CHRNA3-208ENST00000561128 GRIN2AQ12879 1464 aa22.25■■□□□ 1.15
CHRNA3-208ENST00000561128 ERICH3Q5RHP9 1530 aa22.24■■□□□ 1.15
CHRNA3-208ENST00000561128 CEP170Q5SW79 1584 aa22.24■■□□□ 1.15
CHRNA3-208ENST00000561128 FHAD1B1AJZ9 1412 aa22.18■■□□□ 1.14
CHRNA3-208ENST00000561128 NUP160Q12769 1436 aa22.16■■□□□ 1.14
CHRNA3-208ENST00000561128 ERCC6L2Q5T890 1561 aa22.16■■□□□ 1.14
CHRNA3-208ENST00000561128 CYB5RLQ6IPT4 315 aa22.11■■□□□ 1.13
CHRNA3-208ENST00000561128 SHROOM2Q13796 1616 aa22.08■■□□□ 1.13
CHRNA3-208ENST00000561128 RUSC2Q8N2Y8 1516 aa22.05■■□□□ 1.12
CHRNA3-208ENST00000561128 KIF27Q86VH2 1401 aa22.04■■□□□ 1.12
CHRNA3-208ENST00000561128 IGF1RP08069 1367 aa22.02■■□□□ 1.12
CHRNA3-208ENST00000561128 CUL7Q14999 1698 aa22.01■■□□□ 1.11
CHRNA3-208ENST00000561128 PRG4Q92954 1404 aaPredicted RBP21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms