RNA–Protein interactions for RNA: ENST00000561000.1

LINC01220-202, Transcript of long intergenic non-protein coding RNA 1220, humanhuman

TSL 5

Gene LINC01220, Length 159 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01220-202ENST00000561000 NISCHQ9Y2I1 1504 aa46.3■■■■■ 5
LINC01220-202ENST00000561000 ABCC9O60706 1549 aa41.43■■■■■ 4.22
LINC01220-202ENST00000561000 CCDC180Q9P1Z9 1646 aa41.33■■■■■ 4.21
LINC01220-202ENST00000561000 RB1CC1Q8TDY2 1594 aa39.38■■■■□ 3.9
LINC01220-202ENST00000561000 DCAF8L2P0C7V8 631 aa39.31■■■■□ 3.88
LINC01220-202ENST00000561000 NACADO15069 1562 aa39.15■■■■□ 3.86
LINC01220-202ENST00000561000 DNAJC5BQ9UF47 199 aa38.8■■■■□ 3.8
LINC01220-202ENST00000561000 PABPN1Q86U42 306 aaKnown RBP eCLIP38.71■■■■□ 3.79
LINC01220-202ENST00000561000 MYO15BQ96JP2 1530 aa38.62■■■■□ 3.77
LINC01220-202ENST00000561000 ZCCHC6Q5VYS8 1495 aaKnown RBP38.37■■■■□ 3.73
LINC01220-202ENST00000561000 UNC13AQ9UPW8 1703 aa38.33■■■■□ 3.73
LINC01220-202ENST00000561000 BICRAQ9NZM4 1560 aa38.21■■■■□ 3.71
LINC01220-202ENST00000561000 DCAF1Q9Y4B6 1507 aa38.18■■■■□ 3.7
LINC01220-202ENST00000561000 SCRIBQ14160 1630 aa37.81■■■■□ 3.64
LINC01220-202ENST00000561000 SHROOM4Q9ULL8 1493 aa37.67■■■■□ 3.62
LINC01220-202ENST00000561000 CC2D2AQ9P2K1 1620 aa37.32■■■■□ 3.57
LINC01220-202ENST00000561000 CECR2Q9BXF3 1484 aa37.28■■■■□ 3.56
LINC01220-202ENST00000561000 EIF4G1Q04637 1599 aaKnown RBP37.28■■■■□ 3.56
LINC01220-202ENST00000561000 NCAPD3P42695 1498 aa36.19■■■■□ 3.38
LINC01220-202ENST00000561000 ATAD2BQ9ULI0 1458 aa36.11■■■■□ 3.37
LINC01220-202ENST00000561000 SMARCA4P51532 1647 aa36.04■■■■□ 3.36
LINC01220-202ENST00000561000 SMARCA2P51531 1590 aa35.98■■■■□ 3.35
LINC01220-202ENST00000561000 BAZ1AQ9NRL2 1556 aaPredicted RBP35.91■■■■□ 3.34
LINC01220-202ENST00000561000 HMGXB3Q12766 1538 aa35.86■■■■□ 3.33
LINC01220-202ENST00000561000 BAZ1BQ9UIG0 1483 aaKnown RBP35.78■■■■□ 3.32
LINC01220-202ENST00000561000 ERCC6Q03468 1493 aa35.77■■■■□ 3.32
LINC01220-202ENST00000561000 MROH2BQ7Z745 1585 aa35.71■■■■□ 3.31
LINC01220-202ENST00000561000 PEG3Q9GZU2 1588 aa35.64■■■■□ 3.3
LINC01220-202ENST00000561000 NESP48681 1621 aa35.61■■■■□ 3.29
LINC01220-202ENST00000561000 CUX2O14529 1486 aa35.56■■■■□ 3.28
LINC01220-202ENST00000561000 DNAJC5Q9H3Z4 198 aa35.5■■■■□ 3.27
LINC01220-202ENST00000561000 LAMC3Q9Y6N6 1575 aa35.28■■■■□ 3.24
LINC01220-202ENST00000561000 WIZO95785 1651 aa35.24■■■■□ 3.23
LINC01220-202ENST00000561000 PDS5BQ9NTI5 1447 aa35.19■■■■□ 3.22
LINC01220-202ENST00000561000 CADPSQ9ULU8 1353 aa35.16■■■■□ 3.22
LINC01220-202ENST00000561000 THOC2Q8NI27 1593 aaKnown RBP35.08■■■■□ 3.21
LINC01220-202ENST00000561000 RSF1Q96T23 1441 aaPredicted RBP35.06■■■■□ 3.2
LINC01220-202ENST00000561000 KIF21AQ7Z4S6 1674 aa35.01■■■■□ 3.19
LINC01220-202ENST00000561000 MRC2Q9UBG0 1479 aa34.84■■■■□ 3.17
LINC01220-202ENST00000561000 TOP2AP11388 1531 aaKnown RBP34.8■■■■□ 3.16
LINC01220-202ENST00000561000 CFTRP13569 1480 aa34.73■■■■□ 3.15
LINC01220-202ENST00000561000 CEP164Q9UPV0 1460 aa34.73■■■■□ 3.15
LINC01220-202ENST00000561000 FANCD2Q9BXW9 1451 aa34.72■■■■□ 3.15
LINC01220-202ENST00000561000 WDR62O43379 1518 aa34.68■■■■□ 3.14
LINC01220-202ENST00000561000 CCDC88BA6NC98 1476 aa34.49■■■■□ 3.11
LINC01220-202ENST00000561000 URB2Q14146 1524 aaKnown RBP34.4■■■■□ 3.1
LINC01220-202ENST00000561000 PRDM2Q13029 1718 aa34.16■■■■□ 3.06
LINC01220-202ENST00000561000 OSCARQ8IYS5 282 aa34.13■■■■□ 3.05
LINC01220-202ENST00000561000 TRIM41Q8WV44 630 aa34.1■■■■□ 3.05
LINC01220-202ENST00000561000 TOPBP1Q92547 1522 aa34.06■■■■□ 3.04
LINC01220-202ENST00000561000 IFT140Q96RY7 1462 aa34.04■■■■□ 3.04
LINC01220-202ENST00000561000 ZNF608Q9ULD9 1512 aaPredicted RBP33.99■■■■□ 3.03
LINC01220-202ENST00000561000 ABCC8Q09428 1581 aa33.99■■■■□ 3.03
LINC01220-202ENST00000561000 DNMBPQ6XZF7 1577 aa33.9■■■■□ 3.02
LINC01220-202ENST00000561000 SUPT5HO00267 1087 aaKnown RBP33.81■■■■□ 3
LINC01220-202ENST00000561000 AQRO60306 1485 aaKnown RBP eCLIP33.75■■■□□ 2.99
LINC01220-202ENST00000561000 POLA1P09884 1462 aaPredicted RBP33.73■■■□□ 2.99
LINC01220-202ENST00000561000 EIF4G3O43432 1585 aaKnown RBP33.7■■■□□ 2.99
LINC01220-202ENST00000561000 TARBP1Q13395 1621 aaKnown RBP33.67■■■□□ 2.98
LINC01220-202ENST00000561000 SOGA1O94964 1423 aa33.66■■■□□ 2.98
LINC01220-202ENST00000561000 RAD54L2Q9Y4B4 1467 aa33.66■■■□□ 2.98
LINC01220-202ENST00000561000 FBLN2P98095 1184 aa33.62■■■□□ 2.97
LINC01220-202ENST00000561000 TDRD9Q8NDG6 1382 aaKnown RBP33.6■■■□□ 2.97
LINC01220-202ENST00000561000 FGD5Q6ZNL6 1462 aa33.55■■■□□ 2.96
LINC01220-202ENST00000561000 CUX1P39880 1505 aa33.53■■■□□ 2.96
LINC01220-202ENST00000561000 RIMBP3CA6NJZ7 1639 aa33.48■■■□□ 2.95
LINC01220-202ENST00000561000 RIMBP3BA6NNM3 1639 aa33.48■■■□□ 2.95
LINC01220-202ENST00000561000 RIMBP3Q9UFD9 1639 aa33.48■■■□□ 2.95
LINC01220-202ENST00000561000 ARHGEF11O15085 1522 aa33.43■■■□□ 2.94
LINC01220-202ENST00000561000 CHD1O14646 1710 aa33.38■■■□□ 2.93
LINC01220-202ENST00000561000 CHMP7Q8WUX9 453 aaPredicted RBP33.36■■■□□ 2.93
LINC01220-202ENST00000561000 SNAPC4Q5SXM2 1469 aa33.36■■■□□ 2.93
LINC01220-202ENST00000561000 CYB5RLQ6IPT4 315 aa33.35■■■□□ 2.93
LINC01220-202ENST00000561000 WDR97A6NE52 1622 aa33.29■■■□□ 2.92
LINC01220-202ENST00000561000 GRIN2BQ13224 1484 aa33.29■■■□□ 2.92
LINC01220-202ENST00000561000 MAGI1Q96QZ7 1491 aaPredicted RBP33.24■■■□□ 2.91
LINC01220-202ENST00000561000 GAPVD1Q14C86 1478 aa33.2■■■□□ 2.91
LINC01220-202ENST00000561000 SYNJ2O15056 1496 aa33.15■■■□□ 2.9
LINC01220-202ENST00000561000 ABCA10Q8WWZ4 1543 aa33.15■■■□□ 2.9
LINC01220-202ENST00000561000 ARAP1Q96P48 1450 aa33.12■■■□□ 2.89
LINC01220-202ENST00000561000 WRNQ14191 1432 aaPredicted RBP eCLIP33.11■■■□□ 2.89
LINC01220-202ENST00000561000 SYNJ1O43426 1573 aa33.09■■■□□ 2.89
LINC01220-202ENST00000561000 CLASP1Q7Z460 1538 aa33.06■■■□□ 2.88
LINC01220-202ENST00000561000 PBRM1Q86U86 1689 aa33.01■■■□□ 2.88
LINC01220-202ENST00000561000 ABCA5Q8WWZ7 1642 aa33.01■■■□□ 2.87
LINC01220-202ENST00000561000 TOP2BQ02880 1626 aa32.98■■■□□ 2.87
LINC01220-202ENST00000561000 TRHP20396 242 aaPredicted RBP32.96■■■□□ 2.87
LINC01220-202ENST00000561000 BIVM-ERCC5R4GMW8 1640 aa32.93■■■□□ 2.86
LINC01220-202ENST00000561000 GRIN2AQ12879 1464 aa32.84■■■□□ 2.85
LINC01220-202ENST00000561000 FHAD1B1AJZ9 1412 aa32.79■■■□□ 2.84
LINC01220-202ENST00000561000 ADAMTS12P58397 1594 aa32.77■■■□□ 2.84
LINC01220-202ENST00000561000 NUP160Q12769 1436 aa32.72■■■□□ 2.83
LINC01220-202ENST00000561000 ERICH3Q5RHP9 1530 aa32.72■■■□□ 2.83
LINC01220-202ENST00000561000 CEP170Q5SW79 1584 aa32.67■■■□□ 2.82
LINC01220-202ENST00000561000 ERCC6L2Q5T890 1561 aa32.61■■■□□ 2.81
LINC01220-202ENST00000561000 JPH4Q96JJ6 628 aa32.53■■■□□ 2.8
LINC01220-202ENST00000561000 PRG4Q92954 1404 aaPredicted RBP32.47■■■□□ 2.79
LINC01220-202ENST00000561000 IGF1RP08069 1367 aa32.46■■■□□ 2.79
LINC01220-202ENST00000561000 SHROOM2Q13796 1616 aa32.46■■■□□ 2.79
LINC01220-202ENST00000561000 KIF27Q86VH2 1401 aa32.45■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms