RNA–Protein interactions for RNA: ENST00000560987.5

SNRPA1-214, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 2

Gene SNRPA1, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-214ENST00000560987 AEBP2Q6ZN18 517 aaPredicted RBP21.58■■□□□ 1.05
SNRPA1-214ENST00000560987 NISCHQ9Y2I1 1504 aa21.54■■□□□ 1.04
SNRPA1-214ENST00000560987 CHIC1Q5VXU3 224 aa20.19■□□□□ 0.82
SNRPA1-214ENST00000560987 CCDC180Q9P1Z9 1646 aa19.07■□□□□ 0.64
SNRPA1-214ENST00000560987 ABCC9O60706 1549 aa18.86■□□□□ 0.61
SNRPA1-214ENST00000560987 SENP3Q9H4L4 574 aaPredicted RBP18.56■□□□□ 0.56
SNRPA1-214ENST00000560987 DCAF8L2P0C7V8 631 aa18.33■□□□□ 0.52
SNRPA1-214ENST00000560987 PHF23Q9BUL5 403 aaPredicted RBP18.19■□□□□ 0.5
SNRPA1-214ENST00000560987 RB1CC1Q8TDY2 1594 aa18.03■□□□□ 0.48
SNRPA1-214ENST00000560987 NACADO15069 1562 aa17.99■□□□□ 0.47
SNRPA1-214ENST00000560987 ZCCHC6Q5VYS8 1495 aaKnown RBP17.88■□□□□ 0.45
SNRPA1-214ENST00000560987 MYO15BQ96JP2 1530 aa17.8■□□□□ 0.44
SNRPA1-214ENST00000560987 DCAF1Q9Y4B6 1507 aa17.74■□□□□ 0.43
SNRPA1-214ENST00000560987 PABPN1Q86U42 306 aaKnown RBP eCLIP17.68■□□□□ 0.42
SNRPA1-214ENST00000560987 DNAJC5BQ9UF47 199 aa17.64■□□□□ 0.41
SNRPA1-214ENST00000560987 UNC13AQ9UPW8 1703 aa17.57■□□□□ 0.4
SNRPA1-214ENST00000560987 SCRIBQ14160 1630 aa17.5■□□□□ 0.39
SNRPA1-214ENST00000560987 POTEDQ86YR6 584 aa17.46■□□□□ 0.39
SNRPA1-214ENST00000560987 BICRAQ9NZM4 1560 aa17.42■□□□□ 0.38
SNRPA1-214ENST00000560987 FOXD1Q16676 465 aa17.37■□□□□ 0.37
SNRPA1-214ENST00000560987 SHROOM4Q9ULL8 1493 aa17.2■□□□□ 0.34
SNRPA1-214ENST00000560987 CECR2Q9BXF3 1484 aa17■□□□□ 0.31
SNRPA1-214ENST00000560987 EIF4G1Q04637 1599 aaKnown RBP16.99■□□□□ 0.31
SNRPA1-214ENST00000560987 CC2D2AQ9P2K1 1620 aa16.99■□□□□ 0.31
SNRPA1-214ENST00000560987 SMARCA4P51532 1647 aa16.69■□□□□ 0.26
SNRPA1-214ENST00000560987 BAZ1AQ9NRL2 1556 aaPredicted RBP16.68■□□□□ 0.26
SNRPA1-214ENST00000560987 ATAD2BQ9ULI0 1458 aa16.63■□□□□ 0.25
SNRPA1-214ENST00000560987 MROH2BQ7Z745 1585 aa16.62■□□□□ 0.25
SNRPA1-214ENST00000560987 NCAPD3P42695 1498 aa16.61■□□□□ 0.25
SNRPA1-214ENST00000560987 SMARCA2P51531 1590 aa16.6■□□□□ 0.25
SNRPA1-214ENST00000560987 MSH5O43196 834 aa16.57■□□□□ 0.24
SNRPA1-214ENST00000560987 BAZ1BQ9UIG0 1483 aaKnown RBP16.52■□□□□ 0.23
SNRPA1-214ENST00000560987 HMGXB3Q12766 1538 aa16.47■□□□□ 0.23
SNRPA1-214ENST00000560987 PEG3Q9GZU2 1588 aa16.46■□□□□ 0.23
SNRPA1-214ENST00000560987 WIZO95785 1651 aa16.46■□□□□ 0.23
SNRPA1-214ENST00000560987 RSF1Q96T23 1441 aaPredicted RBP16.44■□□□□ 0.22
SNRPA1-214ENST00000560987 ERCC6Q03468 1493 aa16.35■□□□□ 0.21
SNRPA1-214ENST00000560987 SUPT5HO00267 1087 aaKnown RBP16.27■□□□□ 0.2
SNRPA1-214ENST00000560987 NESP48681 1621 aa16.26■□□□□ 0.19
SNRPA1-214ENST00000560987 CUX2O14529 1486 aa16.25■□□□□ 0.19
SNRPA1-214ENST00000560987 DNAJC5Q9H3Z4 198 aa16.25■□□□□ 0.19
SNRPA1-214ENST00000560987 TOP2AP11388 1531 aaKnown RBP16.23■□□□□ 0.19
SNRPA1-214ENST00000560987 CADPSQ9ULU8 1353 aa16.18■□□□□ 0.18
SNRPA1-214ENST00000560987 LAMC3Q9Y6N6 1575 aa16.16■□□□□ 0.18
SNRPA1-214ENST00000560987 PDS5BQ9NTI5 1447 aa16.13■□□□□ 0.17
SNRPA1-214ENST00000560987 CCDC88BA6NC98 1476 aa16.11■□□□□ 0.17
SNRPA1-214ENST00000560987 PIAS4Q8N2W9 510 aaPredicted RBP16.07■□□□□ 0.16
SNRPA1-214ENST00000560987 CFTRP13569 1480 aa16.03■□□□□ 0.16
SNRPA1-214ENST00000560987 KIF21AQ7Z4S6 1674 aa16.01■□□□□ 0.15
SNRPA1-214ENST00000560987 FANCD2Q9BXW9 1451 aa15.98■□□□□ 0.15
SNRPA1-214ENST00000560987 CEP164Q9UPV0 1460 aa15.96■□□□□ 0.14
SNRPA1-214ENST00000560987 THOC2Q8NI27 1593 aaKnown RBP15.92■□□□□ 0.14
SNRPA1-214ENST00000560987 MRC2Q9UBG0 1479 aa15.91■□□□□ 0.14
SNRPA1-214ENST00000560987 PRDM2Q13029 1718 aa15.85■□□□□ 0.13
SNRPA1-214ENST00000560987 WDR62O43379 1518 aa15.79■□□□□ 0.12
SNRPA1-214ENST00000560987 URB2Q14146 1524 aaKnown RBP15.78■□□□□ 0.12
SNRPA1-214ENST00000560987 ABCC8Q09428 1581 aa15.73■□□□□ 0.11
SNRPA1-214ENST00000560987 TOPBP1Q92547 1522 aa15.71■□□□□ 0.11
SNRPA1-214ENST00000560987 OSCARQ8IYS5 282 aa15.67■□□□□ 0.1
SNRPA1-214ENST00000560987 DNMBPQ6XZF7 1577 aa15.66■□□□□ 0.1
SNRPA1-214ENST00000560987 PPP6R1Q9UPN7 881 aa15.65■□□□□ 0.1
SNRPA1-214ENST00000560987 IFT140Q96RY7 1462 aa15.61■□□□□ 0.09
SNRPA1-214ENST00000560987 TRIM41Q8WV44 630 aa15.61■□□□□ 0.09
SNRPA1-214ENST00000560987 SOGA1O94964 1423 aa15.6■□□□□ 0.09
SNRPA1-214ENST00000560987 CUX1P39880 1505 aa15.58■□□□□ 0.08
SNRPA1-214ENST00000560987 ADRA2BP18089 450 aa15.57■□□□□ 0.08
SNRPA1-214ENST00000560987 POLA1P09884 1462 aaPredicted RBP15.56■□□□□ 0.08
SNRPA1-214ENST00000560987 FGD5Q6ZNL6 1462 aa15.55■□□□□ 0.08
SNRPA1-214ENST00000560987 RAD54L2Q9Y4B4 1467 aa15.55■□□□□ 0.08
SNRPA1-214ENST00000560987 ZNF608Q9ULD9 1512 aaPredicted RBP15.54■□□□□ 0.08
SNRPA1-214ENST00000560987 WRNQ14191 1432 aaPredicted RBP eCLIP15.53■□□□□ 0.08
SNRPA1-214ENST00000560987 AQRO60306 1485 aaKnown RBP eCLIP15.52■□□□□ 0.07
SNRPA1-214ENST00000560987 TDRD9Q8NDG6 1382 aaKnown RBP15.51■□□□□ 0.07
SNRPA1-214ENST00000560987 FBLN2P98095 1184 aa15.49■□□□□ 0.07
SNRPA1-214ENST00000560987 TARBP1Q13395 1621 aaKnown RBP15.48■□□□□ 0.07
SNRPA1-214ENST00000560987 PLPPR3Q6T4P5 718 aa15.46■□□□□ 0.07
SNRPA1-214ENST00000560987 EIF4G3O43432 1585 aaKnown RBP15.43■□□□□ 0.06
SNRPA1-214ENST00000560987 TOP2BQ02880 1626 aa15.43■□□□□ 0.06
SNRPA1-214ENST00000560987 SYNJ1O43426 1573 aa15.42■□□□□ 0.06
SNRPA1-214ENST00000560987 BIVM-ERCC5R4GMW8 1640 aa15.4■□□□□ 0.06
SNRPA1-214ENST00000560987 CHMP7Q8WUX9 453 aaPredicted RBP15.39■□□□□ 0.05
SNRPA1-214ENST00000560987 GAPVD1Q14C86 1478 aa15.37■□□□□ 0.05
SNRPA1-214ENST00000560987 ABCA10Q8WWZ4 1543 aa15.37■□□□□ 0.05
SNRPA1-214ENST00000560987 GRIN2BQ13224 1484 aa15.35■□□□□ 0.05
SNRPA1-214ENST00000560987 WDR97A6NE52 1622 aa15.32■□□□□ 0.04
SNRPA1-214ENST00000560987 SNAPC4Q5SXM2 1469 aa15.32■□□□□ 0.04
SNRPA1-214ENST00000560987 CYB5RLQ6IPT4 315 aa15.28■□□□□ 0.04
SNRPA1-214ENST00000560987 MAGI1Q96QZ7 1491 aaPredicted RBP15.27■□□□□ 0.04
SNRPA1-214ENST00000560987 PBRM1Q86U86 1689 aa15.27■□□□□ 0.03
SNRPA1-214ENST00000560987 CHD1O14646 1710 aa15.26■□□□□ 0.03
SNRPA1-214ENST00000560987 ABCA5Q8WWZ7 1642 aa15.25■□□□□ 0.03
SNRPA1-214ENST00000560987 SYNJ2O15056 1496 aa15.23■□□□□ 0.03
SNRPA1-214ENST00000560987 RIMBP3CA6NJZ7 1639 aa15.23■□□□□ 0.03
SNRPA1-214ENST00000560987 RIMBP3BA6NNM3 1639 aa15.23■□□□□ 0.03
SNRPA1-214ENST00000560987 RIMBP3Q9UFD9 1639 aa15.23■□□□□ 0.03
SNRPA1-214ENST00000560987 ARHGEF11O15085 1522 aa15.22■□□□□ 0.03
SNRPA1-214ENST00000560987 KIF27Q86VH2 1401 aa15.22■□□□□ 0.03
SNRPA1-214ENST00000560987 FHAD1B1AJZ9 1412 aa15.18■□□□□ 0.02
SNRPA1-214ENST00000560987 ERICH3Q5RHP9 1530 aa15.18■□□□□ 0.02
SNRPA1-214ENST00000560987 IGF1RP08069 1367 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms