RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 NISCHQ9Y2I1 1504 aa25.68■■□□□ 1.7
TPM1-225ENST00000560679 ABCC9O60706 1549 aa23.57■■□□□ 1.36
TPM1-225ENST00000560679 CCDC180Q9P1Z9 1646 aa23.25■■□□□ 1.31
TPM1-225ENST00000560679 DNAJC5BQ9UF47 199 aa22.44■■□□□ 1.18
TPM1-225ENST00000560679 RB1CC1Q8TDY2 1594 aa22.26■■□□□ 1.15
TPM1-225ENST00000560679 NACADO15069 1562 aa22.02■■□□□ 1.12
TPM1-225ENST00000560679 UNC13AQ9UPW8 1703 aa21.85■■□□□ 1.09
TPM1-225ENST00000560679 PABPN1Q86U42 306 aaKnown RBP eCLIP21.83■■□□□ 1.09
TPM1-225ENST00000560679 BICRAQ9NZM4 1560 aa21.72■■□□□ 1.07
TPM1-225ENST00000560679 DCAF8L2P0C7V8 631 aa21.66■■□□□ 1.06
TPM1-225ENST00000560679 MYO15BQ96JP2 1530 aa21.61■■□□□ 1.05
TPM1-225ENST00000560679 SHROOM4Q9ULL8 1493 aa21.32■■□□□ 1
TPM1-225ENST00000560679 CC2D2AQ9P2K1 1620 aa21.29■■□□□ 1
TPM1-225ENST00000560679 CECR2Q9BXF3 1484 aa21.26■□□□□ 0.99
TPM1-225ENST00000560679 ZCCHC6Q5VYS8 1495 aaKnown RBP21.25■□□□□ 0.99
TPM1-225ENST00000560679 DCAF1Q9Y4B6 1507 aa21.2■□□□□ 0.98
TPM1-225ENST00000560679 EIF4G1Q04637 1599 aaKnown RBP21.17■□□□□ 0.98
TPM1-225ENST00000560679 SCRIBQ14160 1630 aa21.16■□□□□ 0.98
TPM1-225ENST00000560679 DNAJC5Q9H3Z4 198 aa20.83■□□□□ 0.93
TPM1-225ENST00000560679 CUX2O14529 1486 aa20.47■□□□□ 0.87
TPM1-225ENST00000560679 ERCC6Q03468 1493 aa20.34■□□□□ 0.85
TPM1-225ENST00000560679 NCAPD3P42695 1498 aa20.33■□□□□ 0.85
TPM1-225ENST00000560679 ATAD2BQ9ULI0 1458 aa20.23■□□□□ 0.83
TPM1-225ENST00000560679 HMGXB3Q12766 1538 aa20.19■□□□□ 0.82
TPM1-225ENST00000560679 NESP48681 1621 aa20.17■□□□□ 0.82
TPM1-225ENST00000560679 SMARCA4P51532 1647 aa20.15■□□□□ 0.82
TPM1-225ENST00000560679 SMARCA2P51531 1590 aa20.14■□□□□ 0.81
TPM1-225ENST00000560679 THOC2Q8NI27 1593 aaKnown RBP20.09■□□□□ 0.81
TPM1-225ENST00000560679 BAZ1BQ9UIG0 1483 aaKnown RBP19.99■□□□□ 0.79
TPM1-225ENST00000560679 PEG3Q9GZU2 1588 aa19.96■□□□□ 0.79
TPM1-225ENST00000560679 BAZ1AQ9NRL2 1556 aaPredicted RBP19.95■□□□□ 0.78
TPM1-225ENST00000560679 LAMC3Q9Y6N6 1575 aa19.95■□□□□ 0.78
TPM1-225ENST00000560679 KIF21AQ7Z4S6 1674 aa19.93■□□□□ 0.78
TPM1-225ENST00000560679 MROH2BQ7Z745 1585 aa19.81■□□□□ 0.76
TPM1-225ENST00000560679 PDS5BQ9NTI5 1447 aa19.78■□□□□ 0.76
TPM1-225ENST00000560679 TRIM41Q8WV44 630 aa19.73■□□□□ 0.75
TPM1-225ENST00000560679 MRC2Q9UBG0 1479 aa19.7■□□□□ 0.74
TPM1-225ENST00000560679 WDR62O43379 1518 aa19.7■□□□□ 0.74
TPM1-225ENST00000560679 CADPSQ9ULU8 1353 aa19.66■□□□□ 0.74
TPM1-225ENST00000560679 WIZO95785 1651 aa19.56■□□□□ 0.72
TPM1-225ENST00000560679 CEP164Q9UPV0 1460 aa19.53■□□□□ 0.72
TPM1-225ENST00000560679 FANCD2Q9BXW9 1451 aa19.48■□□□□ 0.71
TPM1-225ENST00000560679 CFTRP13569 1480 aa19.41■□□□□ 0.7
TPM1-225ENST00000560679 URB2Q14146 1524 aaKnown RBP19.38■□□□□ 0.69
TPM1-225ENST00000560679 OSCARQ8IYS5 282 aa19.36■□□□□ 0.69
TPM1-225ENST00000560679 RIMBP3CA6NJZ7 1639 aa19.3■□□□□ 0.68
TPM1-225ENST00000560679 RIMBP3BA6NNM3 1639 aa19.3■□□□□ 0.68
TPM1-225ENST00000560679 RIMBP3Q9UFD9 1639 aa19.3■□□□□ 0.68
TPM1-225ENST00000560679 TOP2AP11388 1531 aaKnown RBP19.28■□□□□ 0.68
TPM1-225ENST00000560679 RSF1Q96T23 1441 aaPredicted RBP19.23■□□□□ 0.67
TPM1-225ENST00000560679 PRDM2Q13029 1718 aa19.22■□□□□ 0.67
TPM1-225ENST00000560679 ZNF608Q9ULD9 1512 aaPredicted RBP19.2■□□□□ 0.66
TPM1-225ENST00000560679 ARHGEF11O15085 1522 aa19.19■□□□□ 0.66
TPM1-225ENST00000560679 IFT140Q96RY7 1462 aa19.14■□□□□ 0.65
TPM1-225ENST00000560679 EIF4G3O43432 1585 aaKnown RBP19.1■□□□□ 0.65
TPM1-225ENST00000560679 TOPBP1Q92547 1522 aa19.08■□□□□ 0.64
TPM1-225ENST00000560679 CCDC88BA6NC98 1476 aa19.03■□□□□ 0.64
TPM1-225ENST00000560679 CHD1O14646 1710 aa19.02■□□□□ 0.63
TPM1-225ENST00000560679 ARAP1Q96P48 1450 aa18.99■□□□□ 0.63
TPM1-225ENST00000560679 DNMBPQ6XZF7 1577 aa18.98■□□□□ 0.63
TPM1-225ENST00000560679 TARBP1Q13395 1621 aaKnown RBP18.98■□□□□ 0.63
TPM1-225ENST00000560679 CYB5RLQ6IPT4 315 aa18.95■□□□□ 0.62
TPM1-225ENST00000560679 ABCC8Q09428 1581 aa18.93■□□□□ 0.62
TPM1-225ENST00000560679 AQRO60306 1485 aaKnown RBP eCLIP18.92■□□□□ 0.62
TPM1-225ENST00000560679 POLA1P09884 1462 aaPredicted RBP18.87■□□□□ 0.61
TPM1-225ENST00000560679 TRHP20396 242 aaPredicted RBP18.83■□□□□ 0.6
TPM1-225ENST00000560679 CLASP1Q7Z460 1538 aa18.8■□□□□ 0.6
TPM1-225ENST00000560679 RAD54L2Q9Y4B4 1467 aa18.79■□□□□ 0.6
TPM1-225ENST00000560679 FBLN2P98095 1184 aa18.77■□□□□ 0.6
TPM1-225ENST00000560679 SNAPC4Q5SXM2 1469 aa18.76■□□□□ 0.59
TPM1-225ENST00000560679 TDRD9Q8NDG6 1382 aaKnown RBP18.73■□□□□ 0.59
TPM1-225ENST00000560679 WDR97A6NE52 1622 aa18.73■□□□□ 0.59
TPM1-225ENST00000560679 SOGA1O94964 1423 aa18.7■□□□□ 0.58
TPM1-225ENST00000560679 SYNJ1O43426 1573 aa18.69■□□□□ 0.58
TPM1-225ENST00000560679 FGD5Q6ZNL6 1462 aa18.69■□□□□ 0.58
TPM1-225ENST00000560679 MAGI1Q96QZ7 1491 aaPredicted RBP18.67■□□□□ 0.58
TPM1-225ENST00000560679 CUX1P39880 1505 aa18.64■□□□□ 0.58
TPM1-225ENST00000560679 GRIN2BQ13224 1484 aa18.62■□□□□ 0.57
TPM1-225ENST00000560679 SYNJ2O15056 1496 aa18.61■□□□□ 0.57
TPM1-225ENST00000560679 PBRM1Q86U86 1689 aa18.59■□□□□ 0.57
TPM1-225ENST00000560679 CHMP7Q8WUX9 453 aaPredicted RBP18.58■□□□□ 0.56
TPM1-225ENST00000560679 GAPVD1Q14C86 1478 aa18.56■□□□□ 0.56
TPM1-225ENST00000560679 AEBP2Q6ZN18 517 aaPredicted RBP18.52■□□□□ 0.56
TPM1-225ENST00000560679 ABCA5Q8WWZ7 1642 aa18.51■□□□□ 0.55
TPM1-225ENST00000560679 ERCC6L2Q5T890 1561 aa18.5■□□□□ 0.55
TPM1-225ENST00000560679 ABCA10Q8WWZ4 1543 aa18.44■□□□□ 0.54
TPM1-225ENST00000560679 GRIN2AQ12879 1464 aa18.4■□□□□ 0.54
TPM1-225ENST00000560679 CEP170Q5SW79 1584 aa18.4■□□□□ 0.54
TPM1-225ENST00000560679 ADAMTS12P58397 1594 aa18.39■□□□□ 0.53
TPM1-225ENST00000560679 NUP160Q12769 1436 aa18.37■□□□□ 0.53
TPM1-225ENST00000560679 SHROOM2Q13796 1616 aa18.37■□□□□ 0.53
TPM1-225ENST00000560679 KIF13AQ9H1H9 1805 aa18.33■□□□□ 0.52
TPM1-225ENST00000560679 BIVM-ERCC5R4GMW8 1640 aa18.25■□□□□ 0.51
TPM1-225ENST00000560679 FHAD1B1AJZ9 1412 aa18.24■□□□□ 0.51
TPM1-225ENST00000560679 WRNQ14191 1432 aaPredicted RBP eCLIP18.24■□□□□ 0.51
TPM1-225ENST00000560679 TOP2BQ02880 1626 aa18.22■□□□□ 0.51
TPM1-225ENST00000560679 ERICH3Q5RHP9 1530 aa18.21■□□□□ 0.51
TPM1-225ENST00000560679 PRG4Q92954 1404 aaPredicted RBP18.17■□□□□ 0.5
TPM1-225ENST00000560679 RUSC2Q8N2Y8 1516 aa18.16■□□□□ 0.5
TPM1-225ENST00000560679 ABCC10Q5T3U5 1492 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms