RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 NISCHQ9Y2I1 1504 aa28.94■■■□□ 2.22
LDLR-212ENST00000560467 ABCC9O60706 1549 aa26.29■■□□□ 1.8
LDLR-212ENST00000560467 CCDC180Q9P1Z9 1646 aa25.96■■□□□ 1.75
LDLR-212ENST00000560467 DNAJC5BQ9UF47 199 aa24.86■■□□□ 1.57
LDLR-212ENST00000560467 RB1CC1Q8TDY2 1594 aa24.84■■□□□ 1.57
LDLR-212ENST00000560467 NACADO15069 1562 aa24.63■■□□□ 1.53
LDLR-212ENST00000560467 DCAF8L2P0C7V8 631 aa24.55■■□□□ 1.52
LDLR-212ENST00000560467 PABPN1Q86U42 306 aaKnown RBP eCLIP24.48■■□□□ 1.51
LDLR-212ENST00000560467 MYO15BQ96JP2 1530 aa24.22■■□□□ 1.47
LDLR-212ENST00000560467 UNC13AQ9UPW8 1703 aa24.2■■□□□ 1.46
LDLR-212ENST00000560467 BICRAQ9NZM4 1560 aa24.16■■□□□ 1.46
LDLR-212ENST00000560467 ZCCHC6Q5VYS8 1495 aaKnown RBP23.96■■□□□ 1.43
LDLR-212ENST00000560467 DCAF1Q9Y4B6 1507 aa23.85■■□□□ 1.41
LDLR-212ENST00000560467 SHROOM4Q9ULL8 1493 aa23.79■■□□□ 1.4
LDLR-212ENST00000560467 SCRIBQ14160 1630 aa23.74■■□□□ 1.39
LDLR-212ENST00000560467 CECR2Q9BXF3 1484 aa23.68■■□□□ 1.38
LDLR-212ENST00000560467 CC2D2AQ9P2K1 1620 aa23.67■■□□□ 1.38
LDLR-212ENST00000560467 EIF4G1Q04637 1599 aaKnown RBP23.59■■□□□ 1.37
LDLR-212ENST00000560467 DNAJC5Q9H3Z4 198 aa22.91■■□□□ 1.26
LDLR-212ENST00000560467 NCAPD3P42695 1498 aa22.79■■□□□ 1.24
LDLR-212ENST00000560467 ATAD2BQ9ULI0 1458 aa22.71■■□□□ 1.23
LDLR-212ENST00000560467 ERCC6Q03468 1493 aa22.69■■□□□ 1.22
LDLR-212ENST00000560467 CUX2O14529 1486 aa22.67■■□□□ 1.22
LDLR-212ENST00000560467 SMARCA4P51532 1647 aa22.59■■□□□ 1.21
LDLR-212ENST00000560467 SMARCA2P51531 1590 aa22.59■■□□□ 1.21
LDLR-212ENST00000560467 HMGXB3Q12766 1538 aa22.57■■□□□ 1.2
LDLR-212ENST00000560467 NESP48681 1621 aa22.53■■□□□ 1.2
LDLR-212ENST00000560467 BAZ1BQ9UIG0 1483 aaKnown RBP22.47■■□□□ 1.19
LDLR-212ENST00000560467 BAZ1AQ9NRL2 1556 aaPredicted RBP22.45■■□□□ 1.18
LDLR-212ENST00000560467 PEG3Q9GZU2 1588 aa22.36■■□□□ 1.17
LDLR-212ENST00000560467 MROH2BQ7Z745 1585 aa22.33■■□□□ 1.16
LDLR-212ENST00000560467 THOC2Q8NI27 1593 aaKnown RBP22.29■■□□□ 1.16
LDLR-212ENST00000560467 LAMC3Q9Y6N6 1575 aa22.25■■□□□ 1.15
LDLR-212ENST00000560467 PDS5BQ9NTI5 1447 aa22.17■■□□□ 1.14
LDLR-212ENST00000560467 KIF21AQ7Z4S6 1674 aa22.13■■□□□ 1.13
LDLR-212ENST00000560467 CADPSQ9ULU8 1353 aa22.1■■□□□ 1.13
LDLR-212ENST00000560467 MRC2Q9UBG0 1479 aa22.02■■□□□ 1.12
LDLR-212ENST00000560467 WIZO95785 1651 aa22■■□□□ 1.11
LDLR-212ENST00000560467 WDR62O43379 1518 aa21.95■■□□□ 1.1
LDLR-212ENST00000560467 TRIM41Q8WV44 630 aa21.88■■□□□ 1.09
LDLR-212ENST00000560467 CEP164Q9UPV0 1460 aa21.88■■□□□ 1.09
LDLR-212ENST00000560467 FANCD2Q9BXW9 1451 aa21.85■■□□□ 1.09
LDLR-212ENST00000560467 RSF1Q96T23 1441 aaPredicted RBP21.8■■□□□ 1.08
LDLR-212ENST00000560467 CFTRP13569 1480 aa21.8■■□□□ 1.08
LDLR-212ENST00000560467 TOP2AP11388 1531 aaKnown RBP21.73■■□□□ 1.07
LDLR-212ENST00000560467 URB2Q14146 1524 aaKnown RBP21.7■■□□□ 1.06
LDLR-212ENST00000560467 OSCARQ8IYS5 282 aa21.62■■□□□ 1.05
LDLR-212ENST00000560467 CCDC88BA6NC98 1476 aa21.51■■□□□ 1.03
LDLR-212ENST00000560467 ZNF608Q9ULD9 1512 aaPredicted RBP21.48■■□□□ 1.03
LDLR-212ENST00000560467 IFT140Q96RY7 1462 aa21.45■■□□□ 1.02
LDLR-212ENST00000560467 TOPBP1Q92547 1522 aa21.41■■□□□ 1.02
LDLR-212ENST00000560467 PRDM2Q13029 1718 aa21.4■■□□□ 1.02
LDLR-212ENST00000560467 RIMBP3CA6NJZ7 1639 aa21.34■■□□□ 1.01
LDLR-212ENST00000560467 RIMBP3BA6NNM3 1639 aa21.34■■□□□ 1.01
LDLR-212ENST00000560467 RIMBP3Q9UFD9 1639 aa21.34■■□□□ 1.01
LDLR-212ENST00000560467 ARHGEF11O15085 1522 aa21.29■■□□□ 1
LDLR-212ENST00000560467 EIF4G3O43432 1585 aaKnown RBP21.29■■□□□ 1
LDLR-212ENST00000560467 DNMBPQ6XZF7 1577 aa21.29■■□□□ 1
LDLR-212ENST00000560467 ABCC8Q09428 1581 aa21.28■■□□□ 1
LDLR-212ENST00000560467 AQRO60306 1485 aaKnown RBP eCLIP21.26■□□□□ 0.993e-7■■■■■ 31.7
LDLR-212ENST00000560467 POLA1P09884 1462 aaPredicted RBP21.2■□□□□ 0.98
LDLR-212ENST00000560467 TARBP1Q13395 1621 aaKnown RBP21.19■□□□□ 0.98
LDLR-212ENST00000560467 CYB5RLQ6IPT4 315 aa21.17■□□□□ 0.98
LDLR-212ENST00000560467 FBLN2P98095 1184 aa21.15■□□□□ 0.98
LDLR-212ENST00000560467 RAD54L2Q9Y4B4 1467 aa21.14■□□□□ 0.98
LDLR-212ENST00000560467 CHD1O14646 1710 aa21.11■□□□□ 0.97
LDLR-212ENST00000560467 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
LDLR-212ENST00000560467 ARAP1Q96P48 1450 aa21.1■□□□□ 0.97
LDLR-212ENST00000560467 SOGA1O94964 1423 aa21.08■□□□□ 0.97
LDLR-212ENST00000560467 FGD5Q6ZNL6 1462 aa21.03■□□□□ 0.96
LDLR-212ENST00000560467 SNAPC4Q5SXM2 1469 aa21.02■□□□□ 0.96
LDLR-212ENST00000560467 TRHP20396 242 aaPredicted RBP20.99■□□□□ 0.95
LDLR-212ENST00000560467 CUX1P39880 1505 aa20.99■□□□□ 0.95
LDLR-212ENST00000560467 CHMP7Q8WUX9 453 aaPredicted RBP20.94■□□□□ 0.94
LDLR-212ENST00000560467 CLASP1Q7Z460 1538 aa20.94■□□□□ 0.94
LDLR-212ENST00000560467 GRIN2BQ13224 1484 aa20.92■□□□□ 0.94
LDLR-212ENST00000560467 MAGI1Q96QZ7 1491 aaPredicted RBP20.92■□□□□ 0.94
LDLR-212ENST00000560467 WDR97A6NE52 1622 aa20.92■□□□□ 0.94
LDLR-212ENST00000560467 SYNJ1O43426 1573 aa20.87■□□□□ 0.93
LDLR-212ENST00000560467 SYNJ2O15056 1496 aa20.87■□□□□ 0.93
LDLR-212ENST00000560467 GAPVD1Q14C86 1478 aa20.81■□□□□ 0.92
LDLR-212ENST00000560467 ABCA10Q8WWZ4 1543 aa20.77■□□□□ 0.92
LDLR-212ENST00000560467 PBRM1Q86U86 1689 aa20.73■□□□□ 0.91
LDLR-212ENST00000560467 SUPT5HO00267 1087 aaKnown RBP20.73■□□□□ 0.91
LDLR-212ENST00000560467 ABCA5Q8WWZ7 1642 aa20.73■□□□□ 0.91
LDLR-212ENST00000560467 GRIN2AQ12879 1464 aa20.65■□□□□ 0.9
LDLR-212ENST00000560467 WRNQ14191 1432 aaPredicted RBP eCLIP20.65■□□□□ 0.9
LDLR-212ENST00000560467 ERCC6L2Q5T890 1561 aa20.63■□□□□ 0.89
LDLR-212ENST00000560467 ADAMTS12P58397 1594 aa20.61■□□□□ 0.89
LDLR-212ENST00000560467 NUP160Q12769 1436 aa20.61■□□□□ 0.89
LDLR-212ENST00000560467 CEP170Q5SW79 1584 aa20.59■□□□□ 0.89
LDLR-212ENST00000560467 FHAD1B1AJZ9 1412 aa20.55■□□□□ 0.88
LDLR-212ENST00000560467 TOP2BQ02880 1626 aa20.54■□□□□ 0.88
LDLR-212ENST00000560467 BIVM-ERCC5R4GMW8 1640 aa20.52■□□□□ 0.88
LDLR-212ENST00000560467 AEBP2Q6ZN18 517 aaPredicted RBP20.49■□□□□ 0.87
LDLR-212ENST00000560467 ERICH3Q5RHP9 1530 aa20.48■□□□□ 0.87
LDLR-212ENST00000560467 SHROOM2Q13796 1616 aa20.47■□□□□ 0.87
LDLR-212ENST00000560467 PRG4Q92954 1404 aaPredicted RBP20.43■□□□□ 0.86
LDLR-212ENST00000560467 JPH4Q96JJ6 628 aa20.37■□□□□ 0.85
LDLR-212ENST00000560467 RUSC2Q8N2Y8 1516 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms