RNA–Protein interactions for RNA: ENST00000560463.5

TRAF3-209, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-209ENST00000560463 NISCHQ9Y2I1 1504 aa19.94■□□□□ 0.78
TRAF3-209ENST00000560463 CCDC180Q9P1Z9 1646 aa17.64■□□□□ 0.41
TRAF3-209ENST00000560463 ZCCHC6Q5VYS8 1495 aaKnown RBP16.72■□□□□ 0.27
TRAF3-209ENST00000560463 DCAF1Q9Y4B6 1507 aa16.57■□□□□ 0.24
TRAF3-209ENST00000560463 ABCC9O60706 1549 aa16.55■□□□□ 0.24
TRAF3-209ENST00000560463 MYO15BQ96JP2 1530 aa16.45■□□□□ 0.22
TRAF3-209ENST00000560463 NACADO15069 1562 aa16.38■□□□□ 0.21
TRAF3-209ENST00000560463 DCAF8L2P0C7V8 631 aa16.33■□□□□ 0.2
TRAF3-209ENST00000560463 RB1CC1Q8TDY2 1594 aa16.27■□□□□ 0.2
TRAF3-209ENST00000560463 UNC13AQ9UPW8 1703 aa16.07■□□□□ 0.16
TRAF3-209ENST00000560463 SCRIBQ14160 1630 aa16.02■□□□□ 0.16
TRAF3-209ENST00000560463 SHROOM4Q9ULL8 1493 aa15.97■□□□□ 0.15
TRAF3-209ENST00000560463 BICRAQ9NZM4 1560 aa15.73■□□□□ 0.11
TRAF3-209ENST00000560463 PABPN1Q86U42 306 aaKnown RBP eCLIP15.49■□□□□ 0.07
TRAF3-209ENST00000560463 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
TRAF3-209ENST00000560463 CECR2Q9BXF3 1484 aa15.41■□□□□ 0.06
TRAF3-209ENST00000560463 SMARCA4P51532 1647 aa15.41■□□□□ 0.06
TRAF3-209ENST00000560463 MROH2BQ7Z745 1585 aa15.35■□□□□ 0.05
TRAF3-209ENST00000560463 RSF1Q96T23 1441 aaPredicted RBP15.34■□□□□ 0.05
TRAF3-209ENST00000560463 WIZO95785 1651 aa15.29■□□□□ 0.04
TRAF3-209ENST00000560463 SUPT5HO00267 1087 aaKnown RBP15.29■□□□□ 0.04
TRAF3-209ENST00000560463 EIF4G1Q04637 1599 aaKnown RBP15.27■□□□□ 0.03
TRAF3-209ENST00000560463 PEG3Q9GZU2 1588 aa15.27■□□□□ 0.03
TRAF3-209ENST00000560463 SMARCA2P51531 1590 aa15.19■□□□□ 0.02
TRAF3-209ENST00000560463 TOP2AP11388 1531 aaKnown RBP15.12■□□□□ 0.01
TRAF3-209ENST00000560463 ATAD2BQ9ULI0 1458 aa15.11■□□□□ 0.01
TRAF3-209ENST00000560463 CC2D2AQ9P2K1 1620 aa15.09■□□□□ 0.01
TRAF3-209ENST00000560463 HMGXB3Q12766 1538 aa15.07■□□□□ 0
TRAF3-209ENST00000560463 BAZ1BQ9UIG0 1483 aaKnown RBP15.04■□□□□ -0
TRAF3-209ENST00000560463 NCAPD3P42695 1498 aa15.03■□□□□ -0
TRAF3-209ENST00000560463 CCDC88BA6NC98 1476 aa14.9□□□□□ -0.02
TRAF3-209ENST00000560463 PRDM2Q13029 1718 aa14.85□□□□□ -0.03
TRAF3-209ENST00000560463 CFTRP13569 1480 aa14.65□□□□□ -0.06
TRAF3-209ENST00000560463 DNAJC5BQ9UF47 199 aa14.64□□□□□ -0.07
TRAF3-209ENST00000560463 LAMC3Q9Y6N6 1575 aa14.64□□□□□ -0.07
TRAF3-209ENST00000560463 CHIC1Q5VXU3 224 aa14.61□□□□□ -0.07
TRAF3-209ENST00000560463 CADPSQ9ULU8 1353 aa14.6□□□□□ -0.07
TRAF3-209ENST00000560463 ABCC8Q09428 1581 aa14.54□□□□□ -0.08
TRAF3-209ENST00000560463 KIF21AQ7Z4S6 1674 aa14.5□□□□□ -0.09
TRAF3-209ENST00000560463 BIVM-ERCC5R4GMW8 1640 aa14.5□□□□□ -0.09
TRAF3-209ENST00000560463 NESP48681 1621 aa14.49□□□□□ -0.09
TRAF3-209ENST00000560463 WRNQ14191 1432 aaPredicted RBP eCLIP14.47□□□□□ -0.09
TRAF3-209ENST00000560463 TOP2BQ02880 1626 aa14.46□□□□□ -0.09
TRAF3-209ENST00000560463 TRIM41Q8WV44 630 aa14.46□□□□□ -0.09
TRAF3-209ENST00000560463 FANCD2Q9BXW9 1451 aa14.45□□□□□ -0.1
TRAF3-209ENST00000560463 SYNJ1O43426 1573 aa14.45□□□□□ -0.1
TRAF3-209ENST00000560463 PDS5BQ9NTI5 1447 aa14.44□□□□□ -0.1
TRAF3-209ENST00000560463 CEP164Q9UPV0 1460 aa14.4□□□□□ -0.1
TRAF3-209ENST00000560463 CUX1P39880 1505 aa14.38□□□□□ -0.11
TRAF3-209ENST00000560463 DNMBPQ6XZF7 1577 aa14.37□□□□□ -0.11
TRAF3-209ENST00000560463 TOPBP1Q92547 1522 aa14.3□□□□□ -0.12
TRAF3-209ENST00000560463 URB2Q14146 1524 aaKnown RBP14.27□□□□□ -0.12
TRAF3-209ENST00000560463 MRC2Q9UBG0 1479 aa14.26□□□□□ -0.13
TRAF3-209ENST00000560463 THOC2Q8NI27 1593 aaKnown RBP14.25□□□□□ -0.13
TRAF3-209ENST00000560463 ERCC6Q03468 1493 aa14.25□□□□□ -0.13
TRAF3-209ENST00000560463 EEA1Q15075 1411 aa14.24□□□□□ -0.13
TRAF3-209ENST00000560463 FGD5Q6ZNL6 1462 aa14.24□□□□□ -0.13
TRAF3-209ENST00000560463 WDR97A6NE52 1622 aa14.23□□□□□ -0.13
TRAF3-209ENST00000560463 WDR62O43379 1518 aa14.23□□□□□ -0.13
TRAF3-209ENST00000560463 POLA1P09884 1462 aaPredicted RBP14.19□□□□□ -0.14
TRAF3-209ENST00000560463 AEBP2Q6ZN18 517 aaPredicted RBP14.18□□□□□ -0.14
TRAF3-209ENST00000560463 SOGA1O94964 1423 aa14.17□□□□□ -0.14
TRAF3-209ENST00000560463 TARBP1Q13395 1621 aaKnown RBP14.16□□□□□ -0.14
TRAF3-209ENST00000560463 ABCA10Q8WWZ4 1543 aa14.15□□□□□ -0.14
TRAF3-209ENST00000560463 RUSC2Q8N2Y8 1516 aa14.13□□□□□ -0.15
TRAF3-209ENST00000560463 KIF27Q86VH2 1401 aa14.13□□□□□ -0.15
TRAF3-209ENST00000560463 KIF21BO75037 1637 aa14.11□□□□□ -0.15
TRAF3-209ENST00000560463 RAD54L2Q9Y4B4 1467 aa14.1□□□□□ -0.15
TRAF3-209ENST00000560463 ABCA5Q8WWZ7 1642 aa14.09□□□□□ -0.15
TRAF3-209ENST00000560463 FAM9AQ8IZU1 332 aaPredicted RBP14.09□□□□□ -0.15
TRAF3-209ENST00000560463 CUX2O14529 1486 aa14.09□□□□□ -0.15
TRAF3-209ENST00000560463 PBRM1Q86U86 1689 aa14.09□□□□□ -0.15
TRAF3-209ENST00000560463 CSRNP3Q8WYN3 585 aa14.08□□□□□ -0.16
TRAF3-209ENST00000560463 CUL7Q14999 1698 aa14.07□□□□□ -0.16
TRAF3-209ENST00000560463 IFT140Q96RY7 1462 aa14.06□□□□□ -0.16
TRAF3-209ENST00000560463 ERICH3Q5RHP9 1530 aa14.03□□□□□ -0.16
TRAF3-209ENST00000560463 GOLGA3Q08378 1498 aa14□□□□□ -0.17
TRAF3-209ENST00000560463 GAPVD1Q14C86 1478 aa14□□□□□ -0.17
TRAF3-209ENST00000560463 EIF4G3O43432 1585 aaKnown RBP13.99□□□□□ -0.17
TRAF3-209ENST00000560463 PRXQ9BXM0 1461 aa13.99□□□□□ -0.17
TRAF3-209ENST00000560463 IGF1RP08069 1367 aa13.97□□□□□ -0.17
TRAF3-209ENST00000560463 LOC105371045A0A1W2PR82 267 aa13.97□□□□□ -0.17
TRAF3-209ENST00000560463 TDRD9Q8NDG6 1382 aaKnown RBP13.95□□□□□ -0.18
TRAF3-209ENST00000560463 CTTNBP2Q8WZ74 1663 aa13.95□□□□□ -0.18
TRAF3-209ENST00000560463 GRIN2BQ13224 1484 aa13.93□□□□□ -0.18
TRAF3-209ENST00000560463 RAPGEF2Q9Y4G8 1499 aa13.93□□□□□ -0.18
TRAF3-209ENST00000560463 ZNF608Q9ULD9 1512 aaPredicted RBP13.92□□□□□ -0.18
TRAF3-209ENST00000560463 CARMIL1Q5VZK9 1371 aa13.91□□□□□ -0.18
TRAF3-209ENST00000560463 AQRO60306 1485 aaKnown RBP eCLIP13.91□□□□□ -0.18
TRAF3-209ENST00000560463 TNIKQ9UKE5 1360 aa13.9□□□□□ -0.18
TRAF3-209ENST00000560463 ADAMTS12P58397 1594 aa13.9□□□□□ -0.18
TRAF3-209ENST00000560463 UBTFP17480 764 aaKnown RBP13.86□□□□□ -0.19
TRAF3-209ENST00000560463 MAGI1Q96QZ7 1491 aaPredicted RBP13.86□□□□□ -0.19
TRAF3-209ENST00000560463 FHAD1B1AJZ9 1412 aa13.84□□□□□ -0.19
TRAF3-209ENST00000560463 EHMT2Q96KQ7 1210 aa13.84□□□□□ -0.19
TRAF3-209ENST00000560463 SNAPC4Q5SXM2 1469 aa13.81□□□□□ -0.2
TRAF3-209ENST00000560463 CEP162Q5TB80 1403 aa13.8□□□□□ -0.2
TRAF3-209ENST00000560463 CHD1O14646 1710 aa13.79□□□□□ -0.2
TRAF3-209ENST00000560463 SYNJ2O15056 1496 aa13.78□□□□□ -0.2
TRAF3-209ENST00000560463 GRIN2AQ12879 1464 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms