RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 NISCHQ9Y2I1 1504 aa34.03■■■■□ 3.04
SMAD3-214ENST00000560402 CCDC180Q9P1Z9 1646 aa30.67■■■□□ 2.5
SMAD3-214ENST00000560402 ABCC9O60706 1549 aa30.37■■■□□ 2.45
SMAD3-214ENST00000560402 RB1CC1Q8TDY2 1594 aa29.09■■■□□ 2.25
SMAD3-214ENST00000560402 NACADO15069 1562 aa28.9■■■□□ 2.22
SMAD3-214ENST00000560402 MYO15BQ96JP2 1530 aa28.58■■■□□ 2.17
SMAD3-214ENST00000560402 UNC13AQ9UPW8 1703 aa28.44■■■□□ 2.14
SMAD3-214ENST00000560402 DCAF8L2P0C7V8 631 aa28.44■■■□□ 2.14
SMAD3-214ENST00000560402 DNAJC5BQ9UF47 199 aa28.29■■■□□ 2.12
SMAD3-214ENST00000560402 ZCCHC6Q5VYS8 1495 aaKnown RBP28.26■■■□□ 2.11
SMAD3-214ENST00000560402 DCAF1Q9Y4B6 1507 aa28.21■■■□□ 2.11
SMAD3-214ENST00000560402 BICRAQ9NZM4 1560 aa28.17■■■□□ 2.1
SMAD3-214ENST00000560402 PABPN1Q86U42 306 aaKnown RBP eCLIP28.16■■■□□ 2.1
SMAD3-214ENST00000560402 SHROOM4Q9ULL8 1493 aa27.98■■■□□ 2.07
SMAD3-214ENST00000560402 SCRIBQ14160 1630 aa27.8■■■□□ 2.04
SMAD3-214ENST00000560402 CC2D2AQ9P2K1 1620 aa27.52■■■□□ 2
SMAD3-214ENST00000560402 EIF4G1Q04637 1599 aaKnown RBP27.5■■□□□ 1.99
SMAD3-214ENST00000560402 CECR2Q9BXF3 1484 aa27.39■■□□□ 1.98
SMAD3-214ENST00000560402 NCAPD3P42695 1498 aa26.62■■□□□ 1.85
SMAD3-214ENST00000560402 SMARCA4P51532 1647 aa26.57■■□□□ 1.84
SMAD3-214ENST00000560402 SMARCA2P51531 1590 aa26.54■■□□□ 1.84
SMAD3-214ENST00000560402 HMGXB3Q12766 1538 aa26.52■■□□□ 1.84
SMAD3-214ENST00000560402 ATAD2BQ9ULI0 1458 aa26.52■■□□□ 1.84
SMAD3-214ENST00000560402 BAZ1AQ9NRL2 1556 aaPredicted RBP26.46■■□□□ 1.83
SMAD3-214ENST00000560402 PEG3Q9GZU2 1588 aa26.37■■□□□ 1.81
SMAD3-214ENST00000560402 CUX2O14529 1486 aa26.3■■□□□ 1.8
SMAD3-214ENST00000560402 BAZ1BQ9UIG0 1483 aaKnown RBP26.3■■□□□ 1.8
SMAD3-214ENST00000560402 ERCC6Q03468 1493 aa26.28■■□□□ 1.8
SMAD3-214ENST00000560402 MROH2BQ7Z745 1585 aa26.17■■□□□ 1.78
SMAD3-214ENST00000560402 NESP48681 1621 aa26.1■■□□□ 1.77
SMAD3-214ENST00000560402 LAMC3Q9Y6N6 1575 aa26.09■■□□□ 1.77
SMAD3-214ENST00000560402 DNAJC5Q9H3Z4 198 aa26.03■■□□□ 1.76
SMAD3-214ENST00000560402 THOC2Q8NI27 1593 aaKnown RBP25.97■■□□□ 1.75
SMAD3-214ENST00000560402 KIF21AQ7Z4S6 1674 aa25.89■■□□□ 1.73
SMAD3-214ENST00000560402 WIZO95785 1651 aa25.88■■□□□ 1.73
SMAD3-214ENST00000560402 PDS5BQ9NTI5 1447 aa25.86■■□□□ 1.73
SMAD3-214ENST00000560402 CADPSQ9ULU8 1353 aa25.77■■□□□ 1.72
SMAD3-214ENST00000560402 MRC2Q9UBG0 1479 aa25.65■■□□□ 1.7
SMAD3-214ENST00000560402 RSF1Q96T23 1441 aaPredicted RBP25.63■■□□□ 1.69
SMAD3-214ENST00000560402 TOP2AP11388 1531 aaKnown RBP25.63■■□□□ 1.69
SMAD3-214ENST00000560402 WDR62O43379 1518 aa25.62■■□□□ 1.69
SMAD3-214ENST00000560402 CEP164Q9UPV0 1460 aa25.57■■□□□ 1.68
SMAD3-214ENST00000560402 CFTRP13569 1480 aa25.53■■□□□ 1.68
SMAD3-214ENST00000560402 FANCD2Q9BXW9 1451 aa25.5■■□□□ 1.67
SMAD3-214ENST00000560402 PRDM2Q13029 1718 aa25.46■■□□□ 1.67
SMAD3-214ENST00000560402 URB2Q14146 1524 aaKnown RBP25.27■■□□□ 1.64
SMAD3-214ENST00000560402 CCDC88BA6NC98 1476 aa25.23■■□□□ 1.63
SMAD3-214ENST00000560402 IFT140Q96RY7 1462 aa25.06■■□□□ 1.6
SMAD3-214ENST00000560402 ABCC8Q09428 1581 aa25.05■■□□□ 1.6
SMAD3-214ENST00000560402 TOPBP1Q92547 1522 aa25.04■■□□□ 1.6
SMAD3-214ENST00000560402 DNMBPQ6XZF7 1577 aa25.01■■□□□ 1.59
SMAD3-214ENST00000560402 OSCARQ8IYS5 282 aa24.94■■□□□ 1.58
SMAD3-214ENST00000560402 ZNF608Q9ULD9 1512 aaPredicted RBP24.91■■□□□ 1.58
SMAD3-214ENST00000560402 EIF4G3O43432 1585 aaKnown RBP24.9■■□□□ 1.58
SMAD3-214ENST00000560402 TRIM41Q8WV44 630 aa24.85■■□□□ 1.57
SMAD3-214ENST00000560402 TARBP1Q13395 1621 aaKnown RBP24.84■■□□□ 1.57
SMAD3-214ENST00000560402 POLA1P09884 1462 aaPredicted RBP24.78■■□□□ 1.56
SMAD3-214ENST00000560402 WDR97A6NE52 1622 aa24.73■■□□□ 1.55
SMAD3-214ENST00000560402 RIMBP3CA6NJZ7 1639 aa24.72■■□□□ 1.55
SMAD3-214ENST00000560402 RIMBP3BA6NNM3 1639 aa24.72■■□□□ 1.55
SMAD3-214ENST00000560402 RIMBP3Q9UFD9 1639 aa24.72■■□□□ 1.55
SMAD3-214ENST00000560402 CHD1O14646 1710 aa24.71■■□□□ 1.55
SMAD3-214ENST00000560402 AQRO60306 1485 aaKnown RBP eCLIP24.67■■□□□ 1.542e-6■■■■□ 21.5
SMAD3-214ENST00000560402 ARHGEF11O15085 1522 aa24.64■■□□□ 1.53
SMAD3-214ENST00000560402 FGD5Q6ZNL6 1462 aa24.63■■□□□ 1.53
SMAD3-214ENST00000560402 SOGA1O94964 1423 aa24.61■■□□□ 1.53
SMAD3-214ENST00000560402 RAD54L2Q9Y4B4 1467 aa24.61■■□□□ 1.53
SMAD3-214ENST00000560402 CUX1P39880 1505 aa24.61■■□□□ 1.53
SMAD3-214ENST00000560402 TDRD9Q8NDG6 1382 aaKnown RBP24.51■■□□□ 1.51
SMAD3-214ENST00000560402 SNAPC4Q5SXM2 1469 aa24.51■■□□□ 1.51
SMAD3-214ENST00000560402 MAGI1Q96QZ7 1491 aaPredicted RBP24.51■■□□□ 1.51
SMAD3-214ENST00000560402 GRIN2BQ13224 1484 aa24.46■■□□□ 1.51
SMAD3-214ENST00000560402 PBRM1Q86U86 1689 aa24.45■■□□□ 1.5
SMAD3-214ENST00000560402 SYNJ1O43426 1573 aa24.43■■□□□ 1.5
SMAD3-214ENST00000560402 FBLN2P98095 1184 aa24.43■■□□□ 1.5
SMAD3-214ENST00000560402 CLASP1Q7Z460 1538 aa24.41■■□□□ 1.5
SMAD3-214ENST00000560402 ABCA10Q8WWZ4 1543 aa24.4■■□□□ 1.5
SMAD3-214ENST00000560402 ABCA5Q8WWZ7 1642 aa24.39■■□□□ 1.5
SMAD3-214ENST00000560402 SUPT5HO00267 1087 aaKnown RBP24.39■■□□□ 1.49
SMAD3-214ENST00000560402 SYNJ2O15056 1496 aa24.38■■□□□ 1.49
SMAD3-214ENST00000560402 ARAP1Q96P48 1450 aa24.38■■□□□ 1.49
SMAD3-214ENST00000560402 GAPVD1Q14C86 1478 aa24.36■■□□□ 1.49
SMAD3-214ENST00000560402 BIVM-ERCC5R4GMW8 1640 aa24.33■■□□□ 1.49
SMAD3-214ENST00000560402 CHMP7Q8WUX9 453 aaPredicted RBP24.32■■□□□ 1.48
SMAD3-214ENST00000560402 TOP2BQ02880 1626 aa24.3■■□□□ 1.48
SMAD3-214ENST00000560402 CYB5RLQ6IPT4 315 aa24.29■■□□□ 1.48
SMAD3-214ENST00000560402 WRNQ14191 1432 aaPredicted RBP eCLIP24.27■■□□□ 1.48
SMAD3-214ENST00000560402 ADAMTS12P58397 1594 aa24.2■■□□□ 1.47
SMAD3-214ENST00000560402 GRIN2AQ12879 1464 aa24.15■■□□□ 1.46
SMAD3-214ENST00000560402 ERICH3Q5RHP9 1530 aa24.11■■□□□ 1.45
SMAD3-214ENST00000560402 FHAD1B1AJZ9 1412 aa24.08■■□□□ 1.44
SMAD3-214ENST00000560402 NUP160Q12769 1436 aa24.07■■□□□ 1.44
SMAD3-214ENST00000560402 CEP170Q5SW79 1584 aa24.07■■□□□ 1.44
SMAD3-214ENST00000560402 SHROOM2Q13796 1616 aa24.02■■□□□ 1.44
SMAD3-214ENST00000560402 TRHP20396 242 aaPredicted RBP24.01■■□□□ 1.43
SMAD3-214ENST00000560402 ERCC6L2Q5T890 1561 aa23.94■■□□□ 1.42
SMAD3-214ENST00000560402 RUSC2Q8N2Y8 1516 aa23.87■■□□□ 1.41
SMAD3-214ENST00000560402 CUL7Q14999 1698 aa23.83■■□□□ 1.4
SMAD3-214ENST00000560402 KIF27Q86VH2 1401 aa23.77■■□□□ 1.4
SMAD3-214ENST00000560402 PRG4Q92954 1404 aaPredicted RBP23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 162.8 ms