RNA–Protein interactions for RNA: ENST00000560127.1

RABGGTA-213, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 4

Gene RABGGTA, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-213ENST00000560127 NISCHQ9Y2I1 1504 aa33.01■■■□□ 2.87
RABGGTA-213ENST00000560127 ABCC9O60706 1549 aa30.35■■■□□ 2.45
RABGGTA-213ENST00000560127 CCDC180Q9P1Z9 1646 aa29.89■■■□□ 2.37
RABGGTA-213ENST00000560127 DNAJC5BQ9UF47 199 aa28.97■■■□□ 2.23
RABGGTA-213ENST00000560127 RB1CC1Q8TDY2 1594 aa28.67■■■□□ 2.18
RABGGTA-213ENST00000560127 NACADO15069 1562 aa28.34■■■□□ 2.13
RABGGTA-213ENST00000560127 UNC13AQ9UPW8 1703 aa28.16■■■□□ 2.1
RABGGTA-213ENST00000560127 PABPN1Q86U42 306 aaKnown RBP eCLIP28.16■■■□□ 2.1
RABGGTA-213ENST00000560127 DCAF8L2P0C7V8 631 aa28.02■■■□□ 2.08
RABGGTA-213ENST00000560127 BICRAQ9NZM4 1560 aa27.9■■■□□ 2.06
RABGGTA-213ENST00000560127 MYO15BQ96JP2 1530 aa27.77■■■□□ 2.04
RABGGTA-213ENST00000560127 CC2D2AQ9P2K1 1620 aa27.43■■□□□ 1.98
RABGGTA-213ENST00000560127 CECR2Q9BXF3 1484 aa27.39■■□□□ 1.98
RABGGTA-213ENST00000560127 SHROOM4Q9ULL8 1493 aa27.39■■□□□ 1.98
RABGGTA-213ENST00000560127 ZCCHC6Q5VYS8 1495 aaKnown RBP27.24■■□□□ 1.95
RABGGTA-213ENST00000560127 DCAF1Q9Y4B6 1507 aa27.23■■□□□ 1.95
RABGGTA-213ENST00000560127 EIF4G1Q04637 1599 aaKnown RBP27.22■■□□□ 1.95
RABGGTA-213ENST00000560127 SCRIBQ14160 1630 aa27.19■■□□□ 1.94
RABGGTA-213ENST00000560127 DNAJC5Q9H3Z4 198 aa26.95■■□□□ 1.9
RABGGTA-213ENST00000560127 CUX2O14529 1486 aa26.36■■□□□ 1.81
RABGGTA-213ENST00000560127 ERCC6Q03468 1493 aa26.21■■□□□ 1.79
RABGGTA-213ENST00000560127 NCAPD3P42695 1498 aa26.16■■□□□ 1.78
RABGGTA-213ENST00000560127 ATAD2BQ9ULI0 1458 aa26.02■■□□□ 1.76
RABGGTA-213ENST00000560127 NESP48681 1621 aa25.95■■□□□ 1.74
RABGGTA-213ENST00000560127 HMGXB3Q12766 1538 aa25.93■■□□□ 1.74
RABGGTA-213ENST00000560127 SMARCA2P51531 1590 aa25.9■■□□□ 1.74
RABGGTA-213ENST00000560127 SMARCA4P51532 1647 aa25.88■■□□□ 1.73
RABGGTA-213ENST00000560127 THOC2Q8NI27 1593 aaKnown RBP25.81■■□□□ 1.72
RABGGTA-213ENST00000560127 BAZ1BQ9UIG0 1483 aaKnown RBP25.72■■□□□ 1.71
RABGGTA-213ENST00000560127 LAMC3Q9Y6N6 1575 aa25.67■■□□□ 1.7
RABGGTA-213ENST00000560127 KIF21AQ7Z4S6 1674 aa25.65■■□□□ 1.7
RABGGTA-213ENST00000560127 BAZ1AQ9NRL2 1556 aaPredicted RBP25.65■■□□□ 1.7
RABGGTA-213ENST00000560127 PEG3Q9GZU2 1588 aa25.63■■□□□ 1.69
RABGGTA-213ENST00000560127 TRIM41Q8WV44 630 aa25.52■■□□□ 1.68
RABGGTA-213ENST00000560127 PDS5BQ9NTI5 1447 aa25.5■■□□□ 1.67
RABGGTA-213ENST00000560127 MROH2BQ7Z745 1585 aa25.44■■□□□ 1.66
RABGGTA-213ENST00000560127 MRC2Q9UBG0 1479 aa25.33■■□□□ 1.65
RABGGTA-213ENST00000560127 CADPSQ9ULU8 1353 aa25.32■■□□□ 1.64
RABGGTA-213ENST00000560127 WDR62O43379 1518 aa25.31■■□□□ 1.64
RABGGTA-213ENST00000560127 WIZO95785 1651 aa25.15■■□□□ 1.62
RABGGTA-213ENST00000560127 CEP164Q9UPV0 1460 aa25.12■■□□□ 1.61
RABGGTA-213ENST00000560127 FANCD2Q9BXW9 1451 aa25.05■■□□□ 1.6
RABGGTA-213ENST00000560127 OSCARQ8IYS5 282 aa25.05■■□□□ 1.6
RABGGTA-213ENST00000560127 CFTRP13569 1480 aa24.94■■□□□ 1.58
RABGGTA-213ENST00000560127 URB2Q14146 1524 aaKnown RBP24.91■■□□□ 1.58
RABGGTA-213ENST00000560127 RIMBP3CA6NJZ7 1639 aa24.86■■□□□ 1.57
RABGGTA-213ENST00000560127 RIMBP3BA6NNM3 1639 aa24.86■■□□□ 1.57
RABGGTA-213ENST00000560127 RIMBP3Q9UFD9 1639 aa24.86■■□□□ 1.57
RABGGTA-213ENST00000560127 PRDM2Q13029 1718 aa24.76■■□□□ 1.55
RABGGTA-213ENST00000560127 TOP2AP11388 1531 aaKnown RBP24.74■■□□□ 1.55
RABGGTA-213ENST00000560127 RSF1Q96T23 1441 aaPredicted RBP24.69■■□□□ 1.54
RABGGTA-213ENST00000560127 ARHGEF11O15085 1522 aa24.69■■□□□ 1.54
RABGGTA-213ENST00000560127 ZNF608Q9ULD9 1512 aaPredicted RBP24.69■■□□□ 1.54
RABGGTA-213ENST00000560127 IFT140Q96RY7 1462 aa24.64■■□□□ 1.53
RABGGTA-213ENST00000560127 TOPBP1Q92547 1522 aa24.53■■□□□ 1.52
RABGGTA-213ENST00000560127 EIF4G3O43432 1585 aaKnown RBP24.53■■□□□ 1.52
RABGGTA-213ENST00000560127 CYB5RLQ6IPT4 315 aa24.51■■□□□ 1.51
RABGGTA-213ENST00000560127 CHD1O14646 1710 aa24.5■■□□□ 1.51
RABGGTA-213ENST00000560127 CCDC88BA6NC98 1476 aa24.47■■□□□ 1.51
RABGGTA-213ENST00000560127 ARAP1Q96P48 1450 aa24.42■■□□□ 1.5
RABGGTA-213ENST00000560127 ABCC8Q09428 1581 aa24.41■■□□□ 1.5
RABGGTA-213ENST00000560127 DNMBPQ6XZF7 1577 aa24.4■■□□□ 1.5
RABGGTA-213ENST00000560127 TARBP1Q13395 1621 aaKnown RBP24.39■■□□□ 1.5
RABGGTA-213ENST00000560127 AQRO60306 1485 aaKnown RBP eCLIP24.38■■□□□ 1.494e-11■■■■■ 43.5
RABGGTA-213ENST00000560127 TRHP20396 242 aaPredicted RBP24.37■■□□□ 1.49
RABGGTA-213ENST00000560127 FBLN2P98095 1184 aa24.27■■□□□ 1.48
RABGGTA-213ENST00000560127 POLA1P09884 1462 aaPredicted RBP24.25■■□□□ 1.47
RABGGTA-213ENST00000560127 RAD54L2Q9Y4B4 1467 aa24.18■■□□□ 1.46
RABGGTA-213ENST00000560127 CLASP1Q7Z460 1538 aa24.15■■□□□ 1.46
RABGGTA-213ENST00000560127 TDRD9Q8NDG6 1382 aaKnown RBP24.13■■□□□ 1.45
RABGGTA-213ENST00000560127 SNAPC4Q5SXM2 1469 aa24.11■■□□□ 1.45
RABGGTA-213ENST00000560127 SOGA1O94964 1423 aa24.1■■□□□ 1.45
RABGGTA-213ENST00000560127 WDR97A6NE52 1622 aa24.07■■□□□ 1.44
RABGGTA-213ENST00000560127 SYNJ1O43426 1573 aa24.07■■□□□ 1.44
RABGGTA-213ENST00000560127 AEBP2Q6ZN18 517 aaPredicted RBP24.03■■□□□ 1.44
RABGGTA-213ENST00000560127 FGD5Q6ZNL6 1462 aa24.01■■□□□ 1.43
RABGGTA-213ENST00000560127 MAGI1Q96QZ7 1491 aaPredicted RBP24.01■■□□□ 1.43
RABGGTA-213ENST00000560127 CHMP7Q8WUX9 453 aaPredicted RBP24.01■■□□□ 1.43
RABGGTA-213ENST00000560127 GRIN2BQ13224 1484 aa23.95■■□□□ 1.42
RABGGTA-213ENST00000560127 SYNJ2O15056 1496 aa23.94■■□□□ 1.42
RABGGTA-213ENST00000560127 CUX1P39880 1505 aa23.94■■□□□ 1.42
RABGGTA-213ENST00000560127 PBRM1Q86U86 1689 aa23.91■■□□□ 1.42
RABGGTA-213ENST00000560127 GAPVD1Q14C86 1478 aa23.9■■□□□ 1.42
RABGGTA-213ENST00000560127 ERCC6L2Q5T890 1561 aa23.77■■□□□ 1.4
RABGGTA-213ENST00000560127 ABCA5Q8WWZ7 1642 aa23.76■■□□□ 1.39
RABGGTA-213ENST00000560127 ABCA10Q8WWZ4 1543 aa23.71■■□□□ 1.39
RABGGTA-213ENST00000560127 GRIN2AQ12879 1464 aa23.66■■□□□ 1.38
RABGGTA-213ENST00000560127 CEP170Q5SW79 1584 aa23.65■■□□□ 1.38
RABGGTA-213ENST00000560127 KIF13AQ9H1H9 1805 aa23.65■■□□□ 1.38
RABGGTA-213ENST00000560127 ADAMTS12P58397 1594 aa23.61■■□□□ 1.37
RABGGTA-213ENST00000560127 NUP160Q12769 1436 aa23.61■■□□□ 1.37
RABGGTA-213ENST00000560127 SHROOM2Q13796 1616 aa23.61■■□□□ 1.37
RABGGTA-213ENST00000560127 WRNQ14191 1432 aaPredicted RBP eCLIP23.48■■□□□ 1.35
RABGGTA-213ENST00000560127 FHAD1B1AJZ9 1412 aa23.47■■□□□ 1.35
RABGGTA-213ENST00000560127 BIVM-ERCC5R4GMW8 1640 aa23.44■■□□□ 1.34
RABGGTA-213ENST00000560127 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
RABGGTA-213ENST00000560127 ERICH3Q5RHP9 1530 aa23.4■■□□□ 1.34
RABGGTA-213ENST00000560127 PRG4Q92954 1404 aaPredicted RBP23.4■■□□□ 1.34
RABGGTA-213ENST00000560127 ABCC10Q5T3U5 1492 aa23.35■■□□□ 1.33
RABGGTA-213ENST00000560127 JPH4Q96JJ6 628 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms