RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 NISCHQ9Y2I1 1504 aa44.21■■■■■ 4.67
HDDC3-205ENST00000559898 CCDC180Q9P1Z9 1646 aa39.47■■■■□ 3.91
HDDC3-205ENST00000559898 ABCC9O60706 1549 aa39.29■■■■□ 3.88
HDDC3-205ENST00000559898 RB1CC1Q8TDY2 1594 aa37.39■■■■□ 3.58
HDDC3-205ENST00000559898 DCAF8L2P0C7V8 631 aa37.2■■■■□ 3.55
HDDC3-205ENST00000559898 NACADO15069 1562 aa37.2■■■■□ 3.55
HDDC3-205ENST00000559898 UNC13AQ9UPW8 1703 aa36.78■■■■□ 3.48
HDDC3-205ENST00000559898 MYO15BQ96JP2 1530 aa36.74■■■■□ 3.47
HDDC3-205ENST00000559898 ZCCHC6Q5VYS8 1495 aaKnown RBP36.71■■■■□ 3.47
HDDC3-205ENST00000559898 DNAJC5BQ9UF47 199 aa36.67■■■■□ 3.46
HDDC3-205ENST00000559898 PABPN1Q86U42 306 aaKnown RBP eCLIP36.66■■■■□ 3.46
HDDC3-205ENST00000559898 BICRAQ9NZM4 1560 aa36.47■■■■□ 3.43
HDDC3-205ENST00000559898 DCAF1Q9Y4B6 1507 aa36.43■■■■□ 3.42
HDDC3-205ENST00000559898 SCRIBQ14160 1630 aa36.13■■■■□ 3.37
HDDC3-205ENST00000559898 SHROOM4Q9ULL8 1493 aa35.7■■■■□ 3.31
HDDC3-205ENST00000559898 CC2D2AQ9P2K1 1620 aa35.49■■■■□ 3.27
HDDC3-205ENST00000559898 EIF4G1Q04637 1599 aaKnown RBP35.47■■■■□ 3.27
HDDC3-205ENST00000559898 CECR2Q9BXF3 1484 aa35.28■■■■□ 3.24
HDDC3-205ENST00000559898 SMARCA4P51532 1647 aa34.44■■■■□ 3.1
HDDC3-205ENST00000559898 ATAD2BQ9ULI0 1458 aa34.37■■■■□ 3.09
HDDC3-205ENST00000559898 NCAPD3P42695 1498 aa34.36■■■■□ 3.09
HDDC3-205ENST00000559898 BAZ1AQ9NRL2 1556 aaPredicted RBP34.23■■■■□ 3.07
HDDC3-205ENST00000559898 SMARCA2P51531 1590 aa34.2■■■■□ 3.07
HDDC3-205ENST00000559898 MROH2BQ7Z745 1585 aa34.16■■■■□ 3.06
HDDC3-205ENST00000559898 HMGXB3Q12766 1538 aa34.14■■■■□ 3.06
HDDC3-205ENST00000559898 PEG3Q9GZU2 1588 aa34.04■■■■□ 3.04
HDDC3-205ENST00000559898 BAZ1BQ9UIG0 1483 aaKnown RBP34.01■■■■□ 3.04
HDDC3-205ENST00000559898 NESP48681 1621 aa33.91■■■■□ 3.02
HDDC3-205ENST00000559898 WIZO95785 1651 aa33.8■■■■□ 3
HDDC3-205ENST00000559898 ERCC6Q03468 1493 aa33.77■■■■□ 3
HDDC3-205ENST00000559898 CUX2O14529 1486 aa33.56■■■□□ 2.96
HDDC3-205ENST00000559898 LAMC3Q9Y6N6 1575 aa33.53■■■□□ 2.96
HDDC3-205ENST00000559898 RSF1Q96T23 1441 aaPredicted RBP33.52■■■□□ 2.96
HDDC3-205ENST00000559898 KIF21AQ7Z4S6 1674 aa33.46■■■□□ 2.95
HDDC3-205ENST00000559898 THOC2Q8NI27 1593 aaKnown RBP33.43■■■□□ 2.94
HDDC3-205ENST00000559898 CADPSQ9ULU8 1353 aa33.34■■■□□ 2.93
HDDC3-205ENST00000559898 PDS5BQ9NTI5 1447 aa33.28■■■□□ 2.92
HDDC3-205ENST00000559898 TOP2AP11388 1531 aaKnown RBP33.27■■■□□ 2.92
HDDC3-205ENST00000559898 DNAJC5Q9H3Z4 198 aa33.23■■■□□ 2.91
HDDC3-205ENST00000559898 CFTRP13569 1480 aa33.05■■■□□ 2.88
HDDC3-205ENST00000559898 MRC2Q9UBG0 1479 aa33.05■■■□□ 2.88
HDDC3-205ENST00000559898 FANCD2Q9BXW9 1451 aa33■■■□□ 2.87
HDDC3-205ENST00000559898 WDR62O43379 1518 aa32.98■■■□□ 2.87
HDDC3-205ENST00000559898 CEP164Q9UPV0 1460 aa32.98■■■□□ 2.87
HDDC3-205ENST00000559898 CCDC88BA6NC98 1476 aa32.94■■■□□ 2.86
HDDC3-205ENST00000559898 PRDM2Q13029 1718 aa32.8■■■□□ 2.84
HDDC3-205ENST00000559898 URB2Q14146 1524 aaKnown RBP32.79■■■□□ 2.84
HDDC3-205ENST00000559898 TOPBP1Q92547 1522 aa32.44■■■□□ 2.78
HDDC3-205ENST00000559898 ZNF608Q9ULD9 1512 aaPredicted RBP32.36■■■□□ 2.77
HDDC3-205ENST00000559898 DNMBPQ6XZF7 1577 aa32.32■■■□□ 2.77
HDDC3-205ENST00000559898 SUPT5HO00267 1087 aaKnown RBP32.31■■■□□ 2.76
HDDC3-205ENST00000559898 IFT140Q96RY7 1462 aa32.28■■■□□ 2.76
HDDC3-205ENST00000559898 ABCC8Q09428 1581 aa32.21■■■□□ 2.75
HDDC3-205ENST00000559898 TARBP1Q13395 1621 aaKnown RBP32.16■■■□□ 2.74
HDDC3-205ENST00000559898 EIF4G3O43432 1585 aaKnown RBP32.15■■■□□ 2.74
HDDC3-205ENST00000559898 POLA1P09884 1462 aaPredicted RBP32.13■■■□□ 2.73
HDDC3-205ENST00000559898 OSCARQ8IYS5 282 aa32.09■■■□□ 2.73
HDDC3-205ENST00000559898 RAD54L2Q9Y4B4 1467 aa32.09■■■□□ 2.73
HDDC3-205ENST00000559898 AQRO60306 1485 aaKnown RBP eCLIP32.08■■■□□ 2.734e-8■■■■■ 34.1
HDDC3-205ENST00000559898 CUX1P39880 1505 aa32.06■■■□□ 2.72
HDDC3-205ENST00000559898 TRIM41Q8WV44 630 aa32■■■□□ 2.71
HDDC3-205ENST00000559898 FGD5Q6ZNL6 1462 aa31.99■■■□□ 2.71
HDDC3-205ENST00000559898 SOGA1O94964 1423 aa31.95■■■□□ 2.71
HDDC3-205ENST00000559898 TDRD9Q8NDG6 1382 aaKnown RBP31.92■■■□□ 2.7
HDDC3-205ENST00000559898 CHD1O14646 1710 aa31.89■■■□□ 2.7
HDDC3-205ENST00000559898 WDR97A6NE52 1622 aa31.79■■■□□ 2.68
HDDC3-205ENST00000559898 RIMBP3CA6NJZ7 1639 aa31.78■■■□□ 2.68
HDDC3-205ENST00000559898 RIMBP3BA6NNM3 1639 aa31.78■■■□□ 2.68
HDDC3-205ENST00000559898 RIMBP3Q9UFD9 1639 aa31.78■■■□□ 2.68
HDDC3-205ENST00000559898 SNAPC4Q5SXM2 1469 aa31.73■■■□□ 2.67
HDDC3-205ENST00000559898 FBLN2P98095 1184 aa31.73■■■□□ 2.67
HDDC3-205ENST00000559898 ARHGEF11O15085 1522 aa31.67■■■□□ 2.66
HDDC3-205ENST00000559898 SYNJ1O43426 1573 aa31.64■■■□□ 2.65
HDDC3-205ENST00000559898 PBRM1Q86U86 1689 aa31.62■■■□□ 2.65
HDDC3-205ENST00000559898 GRIN2BQ13224 1484 aa31.6■■■□□ 2.65
HDDC3-205ENST00000559898 BIVM-ERCC5R4GMW8 1640 aa31.59■■■□□ 2.65
HDDC3-205ENST00000559898 ABCA10Q8WWZ4 1543 aa31.59■■■□□ 2.65
HDDC3-205ENST00000559898 ABCA5Q8WWZ7 1642 aa31.57■■■□□ 2.64
HDDC3-205ENST00000559898 GAPVD1Q14C86 1478 aa31.57■■■□□ 2.64
HDDC3-205ENST00000559898 TOP2BQ02880 1626 aa31.57■■■□□ 2.64
HDDC3-205ENST00000559898 WRNQ14191 1432 aaPredicted RBP eCLIP31.55■■■□□ 2.64
HDDC3-205ENST00000559898 MAGI1Q96QZ7 1491 aaPredicted RBP31.54■■■□□ 2.64
HDDC3-205ENST00000559898 CHMP7Q8WUX9 453 aaPredicted RBP31.49■■■□□ 2.63
HDDC3-205ENST00000559898 CLASP1Q7Z460 1538 aa31.47■■■□□ 2.63
HDDC3-205ENST00000559898 SYNJ2O15056 1496 aa31.46■■■□□ 2.63
HDDC3-205ENST00000559898 ARAP1Q96P48 1450 aa31.43■■■□□ 2.62
HDDC3-205ENST00000559898 CYB5RLQ6IPT4 315 aa31.41■■■□□ 2.62
HDDC3-205ENST00000559898 ADAMTS12P58397 1594 aa31.3■■■□□ 2.6
HDDC3-205ENST00000559898 GRIN2AQ12879 1464 aa31.24■■■□□ 2.59
HDDC3-205ENST00000559898 CEP170Q5SW79 1584 aa31.2■■■□□ 2.58
HDDC3-205ENST00000559898 ERICH3Q5RHP9 1530 aa31.17■■■□□ 2.58
HDDC3-205ENST00000559898 ERCC6L2Q5T890 1561 aa31.15■■■□□ 2.58
HDDC3-205ENST00000559898 FHAD1B1AJZ9 1412 aa31.15■■■□□ 2.58
HDDC3-205ENST00000559898 NUP160Q12769 1436 aa31.12■■■□□ 2.57
HDDC3-205ENST00000559898 SHROOM2Q13796 1616 aa30.98■■■□□ 2.55
HDDC3-205ENST00000559898 IGF1RP08069 1367 aa30.92■■■□□ 2.54
HDDC3-205ENST00000559898 TRHP20396 242 aaPredicted RBP30.91■■■□□ 2.54
HDDC3-205ENST00000559898 KIF27Q86VH2 1401 aa30.87■■■□□ 2.53
HDDC3-205ENST00000559898 RUSC2Q8N2Y8 1516 aa30.86■■■□□ 2.53
HDDC3-205ENST00000559898 PRG4Q92954 1404 aaPredicted RBP30.8■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms