RNA–Protein interactions for RNA: ENST00000559822.1

SPG11-219, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 561 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-219ENST00000559822 NISCHQ9Y2I1 1504 aa30.47■■■□□ 2.47
SPG11-219ENST00000559822 CCDC180Q9P1Z9 1646 aa27.34■■□□□ 1.97
SPG11-219ENST00000559822 ABCC9O60706 1549 aa27.13■■□□□ 1.93
SPG11-219ENST00000559822 RB1CC1Q8TDY2 1594 aa25.95■■□□□ 1.75
SPG11-219ENST00000559822 NACADO15069 1562 aa25.82■■□□□ 1.72
SPG11-219ENST00000559822 DCAF8L2P0C7V8 631 aa25.63■■□□□ 1.69
SPG11-219ENST00000559822 MYO15BQ96JP2 1530 aa25.52■■□□□ 1.68
SPG11-219ENST00000559822 ZCCHC6Q5VYS8 1495 aaKnown RBP25.3■■□□□ 1.64
SPG11-219ENST00000559822 UNC13AQ9UPW8 1703 aa25.29■■□□□ 1.64
SPG11-219ENST00000559822 PABPN1Q86U42 306 aaKnown RBP eCLIP25.24■■□□□ 1.63
SPG11-219ENST00000559822 DNAJC5BQ9UF47 199 aa25.24■■□□□ 1.63
SPG11-219ENST00000559822 DCAF1Q9Y4B6 1507 aa25.23■■□□□ 1.63
SPG11-219ENST00000559822 BICRAQ9NZM4 1560 aa25.11■■□□□ 1.61
SPG11-219ENST00000559822 SHROOM4Q9ULL8 1493 aa24.92■■□□□ 1.58
SPG11-219ENST00000559822 SCRIBQ14160 1630 aa24.86■■□□□ 1.57
SPG11-219ENST00000559822 CC2D2AQ9P2K1 1620 aa24.53■■□□□ 1.52
SPG11-219ENST00000559822 EIF4G1Q04637 1599 aaKnown RBP24.52■■□□□ 1.52
SPG11-219ENST00000559822 CECR2Q9BXF3 1484 aa24.45■■□□□ 1.51
SPG11-219ENST00000559822 NCAPD3P42695 1498 aa23.8■■□□□ 1.4
SPG11-219ENST00000559822 SMARCA4P51532 1647 aa23.75■■□□□ 1.39
SPG11-219ENST00000559822 ATAD2BQ9ULI0 1458 aa23.73■■□□□ 1.39
SPG11-219ENST00000559822 SMARCA2P51531 1590 aa23.73■■□□□ 1.39
SPG11-219ENST00000559822 BAZ1AQ9NRL2 1556 aaPredicted RBP23.69■■□□□ 1.38
SPG11-219ENST00000559822 HMGXB3Q12766 1538 aa23.66■■□□□ 1.38
SPG11-219ENST00000559822 PEG3Q9GZU2 1588 aa23.54■■□□□ 1.36
SPG11-219ENST00000559822 BAZ1BQ9UIG0 1483 aaKnown RBP23.54■■□□□ 1.36
SPG11-219ENST00000559822 ERCC6Q03468 1493 aa23.48■■□□□ 1.35
SPG11-219ENST00000559822 MROH2BQ7Z745 1585 aa23.44■■□□□ 1.34
SPG11-219ENST00000559822 CUX2O14529 1486 aa23.39■■□□□ 1.34
SPG11-219ENST00000559822 NESP48681 1621 aa23.31■■□□□ 1.32
SPG11-219ENST00000559822 LAMC3Q9Y6N6 1575 aa23.27■■□□□ 1.32
SPG11-219ENST00000559822 WIZO95785 1651 aa23.17■■□□□ 1.3
SPG11-219ENST00000559822 DNAJC5Q9H3Z4 198 aa23.16■■□□□ 1.3
SPG11-219ENST00000559822 PDS5BQ9NTI5 1447 aa23.14■■□□□ 1.29
SPG11-219ENST00000559822 THOC2Q8NI27 1593 aaKnown RBP23.1■■□□□ 1.29
SPG11-219ENST00000559822 CADPSQ9ULU8 1353 aa23.08■■□□□ 1.29
SPG11-219ENST00000559822 KIF21AQ7Z4S6 1674 aa23.06■■□□□ 1.28
SPG11-219ENST00000559822 RSF1Q96T23 1441 aaPredicted RBP23.02■■□□□ 1.28
SPG11-219ENST00000559822 TOP2AP11388 1531 aaKnown RBP22.95■■□□□ 1.26
SPG11-219ENST00000559822 MRC2Q9UBG0 1479 aa22.91■■□□□ 1.26
SPG11-219ENST00000559822 CEP164Q9UPV0 1460 aa22.85■■□□□ 1.25
SPG11-219ENST00000559822 CFTRP13569 1480 aa22.85■■□□□ 1.25
SPG11-219ENST00000559822 WDR62O43379 1518 aa22.84■■□□□ 1.25
SPG11-219ENST00000559822 FANCD2Q9BXW9 1451 aa22.82■■□□□ 1.24
SPG11-219ENST00000559822 PRDM2Q13029 1718 aa22.65■■□□□ 1.22
SPG11-219ENST00000559822 CCDC88BA6NC98 1476 aa22.64■■□□□ 1.21
SPG11-219ENST00000559822 URB2Q14146 1524 aaKnown RBP22.59■■□□□ 1.21
SPG11-219ENST00000559822 ABCC8Q09428 1581 aa22.42■■□□□ 1.18
SPG11-219ENST00000559822 TOPBP1Q92547 1522 aa22.39■■□□□ 1.17
SPG11-219ENST00000559822 IFT140Q96RY7 1462 aa22.39■■□□□ 1.17
SPG11-219ENST00000559822 DNMBPQ6XZF7 1577 aa22.34■■□□□ 1.17
SPG11-219ENST00000559822 OSCARQ8IYS5 282 aa22.32■■□□□ 1.16
SPG11-219ENST00000559822 ZNF608Q9ULD9 1512 aaPredicted RBP22.26■■□□□ 1.15
SPG11-219ENST00000559822 EIF4G3O43432 1585 aaKnown RBP22.21■■□□□ 1.15
SPG11-219ENST00000559822 TRIM41Q8WV44 630 aa22.2■■□□□ 1.14
SPG11-219ENST00000559822 TARBP1Q13395 1621 aaKnown RBP22.17■■□□□ 1.14
SPG11-219ENST00000559822 POLA1P09884 1462 aaPredicted RBP22.17■■□□□ 1.14
SPG11-219ENST00000559822 AQRO60306 1485 aaKnown RBP eCLIP22.09■■□□□ 1.13
SPG11-219ENST00000559822 SUPT5HO00267 1087 aaKnown RBP22.09■■□□□ 1.13
SPG11-219ENST00000559822 SOGA1O94964 1423 aa22.07■■□□□ 1.12
SPG11-219ENST00000559822 FGD5Q6ZNL6 1462 aa22.05■■□□□ 1.12
SPG11-219ENST00000559822 RAD54L2Q9Y4B4 1467 aa22.05■■□□□ 1.12
SPG11-219ENST00000559822 WDR97A6NE52 1622 aa22.05■■□□□ 1.12
SPG11-219ENST00000559822 CUX1P39880 1505 aa22.03■■□□□ 1.12
SPG11-219ENST00000559822 CHD1O14646 1710 aa22■■□□□ 1.11
SPG11-219ENST00000559822 RIMBP3CA6NJZ7 1639 aa21.99■■□□□ 1.11
SPG11-219ENST00000559822 RIMBP3BA6NNM3 1639 aa21.99■■□□□ 1.11
SPG11-219ENST00000559822 RIMBP3Q9UFD9 1639 aa21.99■■□□□ 1.11
SPG11-219ENST00000559822 TDRD9Q8NDG6 1382 aaKnown RBP21.99■■□□□ 1.11
SPG11-219ENST00000559822 FBLN2P98095 1184 aa21.95■■□□□ 1.1
SPG11-219ENST00000559822 ARHGEF11O15085 1522 aa21.95■■□□□ 1.1
SPG11-219ENST00000559822 SNAPC4Q5SXM2 1469 aa21.9■■□□□ 1.1
SPG11-219ENST00000559822 GRIN2BQ13224 1484 aa21.9■■□□□ 1.1
SPG11-219ENST00000559822 MAGI1Q96QZ7 1491 aaPredicted RBP21.9■■□□□ 1.1
SPG11-219ENST00000559822 CHMP7Q8WUX9 453 aaPredicted RBP21.83■■□□□ 1.09
SPG11-219ENST00000559822 ABCA10Q8WWZ4 1543 aa21.83■■□□□ 1.09
SPG11-219ENST00000559822 GAPVD1Q14C86 1478 aa21.83■■□□□ 1.08
SPG11-219ENST00000559822 SYNJ2O15056 1496 aa21.81■■□□□ 1.08
SPG11-219ENST00000559822 SYNJ1O43426 1573 aa21.81■■□□□ 1.08
SPG11-219ENST00000559822 PBRM1Q86U86 1689 aa21.8■■□□□ 1.08
SPG11-219ENST00000559822 WRNQ14191 1432 aaPredicted RBP eCLIP21.79■■□□□ 1.08
SPG11-219ENST00000559822 ABCA5Q8WWZ7 1642 aa21.77■■□□□ 1.08
SPG11-219ENST00000559822 CYB5RLQ6IPT4 315 aa21.76■■□□□ 1.07
SPG11-219ENST00000559822 BIVM-ERCC5R4GMW8 1640 aa21.76■■□□□ 1.07
SPG11-219ENST00000559822 CLASP1Q7Z460 1538 aa21.75■■□□□ 1.07
SPG11-219ENST00000559822 TOP2BQ02880 1626 aa21.75■■□□□ 1.07
SPG11-219ENST00000559822 ARAP1Q96P48 1450 aa21.72■■□□□ 1.07
SPG11-219ENST00000559822 GRIN2AQ12879 1464 aa21.6■■□□□ 1.05
SPG11-219ENST00000559822 ADAMTS12P58397 1594 aa21.6■■□□□ 1.05
SPG11-219ENST00000559822 ERICH3Q5RHP9 1530 aa21.58■■□□□ 1.04
SPG11-219ENST00000559822 FHAD1B1AJZ9 1412 aa21.56■■□□□ 1.04
SPG11-219ENST00000559822 NUP160Q12769 1436 aa21.52■■□□□ 1.04
SPG11-219ENST00000559822 TRHP20396 242 aaPredicted RBP21.5■■□□□ 1.03
SPG11-219ENST00000559822 CEP170Q5SW79 1584 aa21.48■■□□□ 1.03
SPG11-219ENST00000559822 SHROOM2Q13796 1616 aa21.4■■□□□ 1.02
SPG11-219ENST00000559822 KIF27Q86VH2 1401 aa21.37■■□□□ 1.01
SPG11-219ENST00000559822 ERCC6L2Q5T890 1561 aa21.36■■□□□ 1.01
SPG11-219ENST00000559822 CUL7Q14999 1698 aa21.31■■□□□ 1
SPG11-219ENST00000559822 PRG4Q92954 1404 aaPredicted RBP21.29■■□□□ 1
SPG11-219ENST00000559822 RUSC2Q8N2Y8 1516 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms