RNA–Protein interactions for RNA: ENST00000559734.1

TRAF3-207, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-207ENST00000559734 NISCHQ9Y2I1 1504 aa27.48■■□□□ 1.99
TRAF3-207ENST00000559734 ABCC9O60706 1549 aa25.32■■□□□ 1.64
TRAF3-207ENST00000559734 CCDC180Q9P1Z9 1646 aa24.81■■□□□ 1.56
TRAF3-207ENST00000559734 DNAJC5BQ9UF47 199 aa24.05■■□□□ 1.44
TRAF3-207ENST00000559734 RB1CC1Q8TDY2 1594 aa23.86■■□□□ 1.41
TRAF3-207ENST00000559734 NACADO15069 1562 aa23.57■■□□□ 1.36
TRAF3-207ENST00000559734 DCAF8L2P0C7V8 631 aa23.53■■□□□ 1.36
TRAF3-207ENST00000559734 PABPN1Q86U42 306 aaKnown RBP eCLIP23.53■■□□□ 1.36
TRAF3-207ENST00000559734 UNC13AQ9UPW8 1703 aa23.27■■□□□ 1.32
TRAF3-207ENST00000559734 BICRAQ9NZM4 1560 aa23.14■■□□□ 1.3
TRAF3-207ENST00000559734 MYO15BQ96JP2 1530 aa23.03■■□□□ 1.28
TRAF3-207ENST00000559734 CECR2Q9BXF3 1484 aa22.82■■□□□ 1.24
TRAF3-207ENST00000559734 CC2D2AQ9P2K1 1620 aa22.8■■□□□ 1.24
TRAF3-207ENST00000559734 SHROOM4Q9ULL8 1493 aa22.75■■□□□ 1.23
TRAF3-207ENST00000559734 ZCCHC6Q5VYS8 1495 aaKnown RBP22.7■■□□□ 1.22
TRAF3-207ENST00000559734 SCRIBQ14160 1630 aa22.69■■□□□ 1.22
TRAF3-207ENST00000559734 EIF4G1Q04637 1599 aaKnown RBP22.64■■□□□ 1.22
TRAF3-207ENST00000559734 DCAF1Q9Y4B6 1507 aa22.62■■□□□ 1.21
TRAF3-207ENST00000559734 DNAJC5Q9H3Z4 198 aa22.36■■□□□ 1.17
TRAF3-207ENST00000559734 CUX2O14529 1486 aa21.92■■□□□ 1.1
TRAF3-207ENST00000559734 ERCC6Q03468 1493 aa21.91■■□□□ 1.1
TRAF3-207ENST00000559734 NCAPD3P42695 1498 aa21.75■■□□□ 1.07
TRAF3-207ENST00000559734 ATAD2BQ9ULI0 1458 aa21.66■■□□□ 1.06
TRAF3-207ENST00000559734 NESP48681 1621 aa21.62■■□□□ 1.05
TRAF3-207ENST00000559734 SMARCA2P51531 1590 aa21.57■■□□□ 1.04
TRAF3-207ENST00000559734 HMGXB3Q12766 1538 aa21.56■■□□□ 1.04
TRAF3-207ENST00000559734 SMARCA4P51532 1647 aa21.54■■□□□ 1.04
TRAF3-207ENST00000559734 BAZ1BQ9UIG0 1483 aaKnown RBP21.47■■□□□ 1.03
TRAF3-207ENST00000559734 THOC2Q8NI27 1593 aaKnown RBP21.44■■□□□ 1.02
TRAF3-207ENST00000559734 BAZ1AQ9NRL2 1556 aaPredicted RBP21.37■■□□□ 1.01
TRAF3-207ENST00000559734 TRIM41Q8WV44 630 aa21.36■■□□□ 1.01
TRAF3-207ENST00000559734 LAMC3Q9Y6N6 1575 aa21.34■■□□□ 1.01
TRAF3-207ENST00000559734 KIF21AQ7Z4S6 1674 aa21.29■■□□□ 1
TRAF3-207ENST00000559734 PEG3Q9GZU2 1588 aa21.27■■□□□ 1
TRAF3-207ENST00000559734 PDS5BQ9NTI5 1447 aa21.26■□□□□ 0.99
TRAF3-207ENST00000559734 MROH2BQ7Z745 1585 aa21.2■□□□□ 0.98
TRAF3-207ENST00000559734 MRC2Q9UBG0 1479 aa21.12■□□□□ 0.97
TRAF3-207ENST00000559734 CADPSQ9ULU8 1353 aa21.1■□□□□ 0.97
TRAF3-207ENST00000559734 WDR62O43379 1518 aa21.05■□□□□ 0.96
TRAF3-207ENST00000559734 CEP164Q9UPV0 1460 aa20.96■□□□□ 0.95
TRAF3-207ENST00000559734 WIZO95785 1651 aa20.93■□□□□ 0.94
TRAF3-207ENST00000559734 FANCD2Q9BXW9 1451 aa20.9■□□□□ 0.94
TRAF3-207ENST00000559734 OSCARQ8IYS5 282 aa20.87■□□□□ 0.93
TRAF3-207ENST00000559734 CFTRP13569 1480 aa20.75■□□□□ 0.91
TRAF3-207ENST00000559734 URB2Q14146 1524 aaKnown RBP20.73■□□□□ 0.91
TRAF3-207ENST00000559734 RIMBP3CA6NJZ7 1639 aa20.65■□□□□ 0.9
TRAF3-207ENST00000559734 RIMBP3BA6NNM3 1639 aa20.65■□□□□ 0.9
TRAF3-207ENST00000559734 RIMBP3Q9UFD9 1639 aa20.65■□□□□ 0.9
TRAF3-207ENST00000559734 TOP2AP11388 1531 aaKnown RBP20.63■□□□□ 0.89
TRAF3-207ENST00000559734 RSF1Q96T23 1441 aaPredicted RBP20.6■□□□□ 0.89
TRAF3-207ENST00000559734 ZNF608Q9ULD9 1512 aaPredicted RBP20.57■□□□□ 0.88
TRAF3-207ENST00000559734 ARHGEF11O15085 1522 aa20.55■□□□□ 0.88
TRAF3-207ENST00000559734 AEBP2Q6ZN18 517 aaPredicted RBP20.55■□□□□ 0.88
TRAF3-207ENST00000559734 IFT140Q96RY7 1462 aa20.53■□□□□ 0.88
TRAF3-207ENST00000559734 PRDM2Q13029 1718 aa20.5■□□□□ 0.87
TRAF3-207ENST00000559734 CYB5RLQ6IPT4 315 aa20.46■□□□□ 0.87
TRAF3-207ENST00000559734 TOPBP1Q92547 1522 aa20.44■□□□□ 0.86
TRAF3-207ENST00000559734 EIF4G3O43432 1585 aaKnown RBP20.42■□□□□ 0.86
TRAF3-207ENST00000559734 TRHP20396 242 aaPredicted RBP20.42■□□□□ 0.86
TRAF3-207ENST00000559734 CCDC88BA6NC98 1476 aa20.4■□□□□ 0.86
TRAF3-207ENST00000559734 FBLN2P98095 1184 aa20.35■□□□□ 0.85
TRAF3-207ENST00000559734 CHD1O14646 1710 aa20.34■□□□□ 0.85
TRAF3-207ENST00000559734 AQRO60306 1485 aaKnown RBP eCLIP20.33■□□□□ 0.85
TRAF3-207ENST00000559734 ABCC8Q09428 1581 aa20.33■□□□□ 0.84
TRAF3-207ENST00000559734 DNMBPQ6XZF7 1577 aa20.33■□□□□ 0.84
TRAF3-207ENST00000559734 ARAP1Q96P48 1450 aa20.32■□□□□ 0.84
TRAF3-207ENST00000559734 TARBP1Q13395 1621 aaKnown RBP20.26■□□□□ 0.83
TRAF3-207ENST00000559734 POLA1P09884 1462 aaPredicted RBP20.21■□□□□ 0.83
TRAF3-207ENST00000559734 RAD54L2Q9Y4B4 1467 aa20.18■□□□□ 0.82
TRAF3-207ENST00000559734 TDRD9Q8NDG6 1382 aaKnown RBP20.16■□□□□ 0.82
TRAF3-207ENST00000559734 SNAPC4Q5SXM2 1469 aa20.13■□□□□ 0.81
TRAF3-207ENST00000559734 SOGA1O94964 1423 aa20.12■□□□□ 0.81
TRAF3-207ENST00000559734 CLASP1Q7Z460 1538 aa20.08■□□□□ 0.81
TRAF3-207ENST00000559734 CHMP7Q8WUX9 453 aaPredicted RBP20.08■□□□□ 0.81
TRAF3-207ENST00000559734 SYNJ1O43426 1573 aa20.05■□□□□ 0.8
TRAF3-207ENST00000559734 FGD5Q6ZNL6 1462 aa20.05■□□□□ 0.8
TRAF3-207ENST00000559734 MAGI1Q96QZ7 1491 aaPredicted RBP20■□□□□ 0.79
TRAF3-207ENST00000559734 WDR97A6NE52 1622 aa19.99■□□□□ 0.79
TRAF3-207ENST00000559734 GRIN2BQ13224 1484 aa19.99■□□□□ 0.79
TRAF3-207ENST00000559734 SYNJ2O15056 1496 aa19.96■□□□□ 0.79
TRAF3-207ENST00000559734 CUX1P39880 1505 aa19.95■□□□□ 0.78
TRAF3-207ENST00000559734 GAPVD1Q14C86 1478 aa19.93■□□□□ 0.78
TRAF3-207ENST00000559734 PBRM1Q86U86 1689 aa19.87■□□□□ 0.77
TRAF3-207ENST00000559734 ERCC6L2Q5T890 1561 aa19.78■□□□□ 0.76
TRAF3-207ENST00000559734 ABCA5Q8WWZ7 1642 aa19.76■□□□□ 0.75
TRAF3-207ENST00000559734 CHIC1Q5VXU3 224 aa19.75■□□□□ 0.75
TRAF3-207ENST00000559734 ABCA10Q8WWZ4 1543 aa19.75■□□□□ 0.75
TRAF3-207ENST00000559734 GRIN2AQ12879 1464 aa19.73■□□□□ 0.75
TRAF3-207ENST00000559734 CEP170Q5SW79 1584 aa19.7■□□□□ 0.74
TRAF3-207ENST00000559734 ADAMTS12P58397 1594 aa19.67■□□□□ 0.74
TRAF3-207ENST00000559734 NUP160Q12769 1436 aa19.66■□□□□ 0.74
TRAF3-207ENST00000559734 WRNQ14191 1432 aaPredicted RBP eCLIP19.62■□□□□ 0.73
TRAF3-207ENST00000559734 FHAD1B1AJZ9 1412 aa19.59■□□□□ 0.73
TRAF3-207ENST00000559734 SHROOM2Q13796 1616 aa19.58■□□□□ 0.73
TRAF3-207ENST00000559734 KIF13AQ9H1H9 1805 aa19.55■□□□□ 0.72
TRAF3-207ENST00000559734 PRG4Q92954 1404 aaPredicted RBP19.54■□□□□ 0.72
TRAF3-207ENST00000559734 SUPT5HO00267 1087 aaKnown RBP19.5■□□□□ 0.71
TRAF3-207ENST00000559734 FAM69CQ0P6D2 419 aa19.5■□□□□ 0.71
TRAF3-207ENST00000559734 ERICH3Q5RHP9 1530 aa19.5■□□□□ 0.71
TRAF3-207ENST00000559734 TOP2BQ02880 1626 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms