RNA–Protein interactions for RNA: ENST00000559560.1

PBX1-216, Transcript of PBX homeobox 1, humanhuman

TSL 4

Gene PBX1, Length 454 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-216ENST00000559560 NISCHQ9Y2I1 1504 aa54.94■■■■■ 6.39
PBX1-216ENST00000559560 CCDC180Q9P1Z9 1646 aa49■■■■■ 5.43
PBX1-216ENST00000559560 ABCC9O60706 1549 aa47.94■■■■■ 5.26
PBX1-216ENST00000559560 RB1CC1Q8TDY2 1594 aa46.15■■■■■ 4.98
PBX1-216ENST00000559560 NACADO15069 1562 aa46.07■■■■■ 4.97
PBX1-216ENST00000559560 DCAF8L2P0C7V8 631 aa45.85■■■■■ 4.93
PBX1-216ENST00000559560 MYO15BQ96JP2 1530 aa45.79■■■■■ 4.92
PBX1-216ENST00000559560 ZCCHC6Q5VYS8 1495 aaKnown RBP45.75■■■■■ 4.91
PBX1-216ENST00000559560 DCAF1Q9Y4B6 1507 aa45.52■■■■■ 4.88
PBX1-216ENST00000559560 UNC13AQ9UPW8 1703 aa45.06■■■■■ 4.8
PBX1-216ENST00000559560 PABPN1Q86U42 306 aaKnown RBP eCLIP44.72■■■■■ 4.75
PBX1-216ENST00000559560 BICRAQ9NZM4 1560 aa44.69■■■■■ 4.75
PBX1-216ENST00000559560 SCRIBQ14160 1630 aa44.6■■■■■ 4.73
PBX1-216ENST00000559560 SHROOM4Q9ULL8 1493 aa44.36■■■■■ 4.69
PBX1-216ENST00000559560 DNAJC5BQ9UF47 199 aa44.04■■■■■ 4.64
PBX1-216ENST00000559560 EIF4G1Q04637 1599 aaKnown RBP43.56■■■■■ 4.56
PBX1-216ENST00000559560 CC2D2AQ9P2K1 1620 aa43.4■■■■■ 4.54
PBX1-216ENST00000559560 CECR2Q9BXF3 1484 aa43.13■■■■■ 4.5
PBX1-216ENST00000559560 SMARCA4P51532 1647 aa42.68■■■■■ 4.42
PBX1-216ENST00000559560 BAZ1AQ9NRL2 1556 aaPredicted RBP42.64■■■■■ 4.42
PBX1-216ENST00000559560 NCAPD3P42695 1498 aa42.48■■■■■ 4.39
PBX1-216ENST00000559560 ATAD2BQ9ULI0 1458 aa42.46■■■■■ 4.39
PBX1-216ENST00000559560 SMARCA2P51531 1590 aa42.46■■■■■ 4.39
PBX1-216ENST00000559560 MROH2BQ7Z745 1585 aa42.3■■■■■ 4.36
PBX1-216ENST00000559560 PEG3Q9GZU2 1588 aa42.3■■■■■ 4.36
PBX1-216ENST00000559560 HMGXB3Q12766 1538 aa42.3■■■■■ 4.36
PBX1-216ENST00000559560 BAZ1BQ9UIG0 1483 aaKnown RBP42.12■■■■■ 4.33
PBX1-216ENST00000559560 WIZO95785 1651 aa41.84■■■■■ 4.29
PBX1-216ENST00000559560 RSF1Q96T23 1441 aaPredicted RBP41.77■■■■■ 4.28
PBX1-216ENST00000559560 TOP2AP11388 1531 aaKnown RBP41.45■■■■■ 4.23
PBX1-216ENST00000559560 NESP48681 1621 aa41.42■■■■■ 4.22
PBX1-216ENST00000559560 LAMC3Q9Y6N6 1575 aa41.42■■■■■ 4.22
PBX1-216ENST00000559560 ERCC6Q03468 1493 aa41.39■■■■■ 4.22
PBX1-216ENST00000559560 CADPSQ9ULU8 1353 aa41.22■■■■■ 4.19
PBX1-216ENST00000559560 PDS5BQ9NTI5 1447 aa41.13■■■■■ 4.17
PBX1-216ENST00000559560 CUX2O14529 1486 aa41.05■■■■■ 4.16
PBX1-216ENST00000559560 KIF21AQ7Z4S6 1674 aa41■■■■■ 4.15
PBX1-216ENST00000559560 CFTRP13569 1480 aa40.96■■■■■ 4.15
PBX1-216ENST00000559560 THOC2Q8NI27 1593 aaKnown RBP40.91■■■■■ 4.14
PBX1-216ENST00000559560 CCDC88BA6NC98 1476 aa40.9■■■■■ 4.14
PBX1-216ENST00000559560 FANCD2Q9BXW9 1451 aa40.74■■■■■ 4.11
PBX1-216ENST00000559560 CEP164Q9UPV0 1460 aa40.73■■■■■ 4.11
PBX1-216ENST00000559560 PRDM2Q13029 1718 aa40.71■■■■■ 4.11
PBX1-216ENST00000559560 MRC2Q9UBG0 1479 aa40.7■■■■■ 4.11
PBX1-216ENST00000559560 WDR62O43379 1518 aa40.58■■■■■ 4.09
PBX1-216ENST00000559560 SUPT5HO00267 1087 aaKnown RBP40.53■■■■■ 4.08
PBX1-216ENST00000559560 URB2Q14146 1524 aaKnown RBP40.32■■■■■ 4.05
PBX1-216ENST00000559560 ABCC8Q09428 1581 aa40.14■■■■■ 4.02
PBX1-216ENST00000559560 TOPBP1Q92547 1522 aa40.08■■■■■ 4.01
PBX1-216ENST00000559560 DNMBPQ6XZF7 1577 aa40.06■■■■■ 4
PBX1-216ENST00000559560 IFT140Q96RY7 1462 aa39.89■■■■□ 3.98
PBX1-216ENST00000559560 DNAJC5Q9H3Z4 198 aa39.87■■■■□ 3.97
PBX1-216ENST00000559560 POLA1P09884 1462 aaPredicted RBP39.73■■■■□ 3.95
PBX1-216ENST00000559560 CUX1P39880 1505 aa39.7■■■■□ 3.95
PBX1-216ENST00000559560 TARBP1Q13395 1621 aaKnown RBP39.65■■■■□ 3.94
PBX1-216ENST00000559560 ZNF608Q9ULD9 1512 aaPredicted RBP39.65■■■■□ 3.94
PBX1-216ENST00000559560 FGD5Q6ZNL6 1462 aa39.61■■■■□ 3.93
PBX1-216ENST00000559560 EIF4G3O43432 1585 aaKnown RBP39.55■■■■□ 3.92
PBX1-216ENST00000559560 SOGA1O94964 1423 aa39.55■■■■□ 3.92
PBX1-216ENST00000559560 RAD54L2Q9Y4B4 1467 aa39.5■■■■□ 3.91
PBX1-216ENST00000559560 WDR97A6NE52 1622 aa39.44■■■■□ 3.9
PBX1-216ENST00000559560 WRNQ14191 1432 aaPredicted RBP eCLIP39.42■■■■□ 3.9
PBX1-216ENST00000559560 AQRO60306 1485 aaKnown RBP eCLIP39.4■■■■□ 3.9
PBX1-216ENST00000559560 BIVM-ERCC5R4GMW8 1640 aa39.38■■■■□ 3.89
PBX1-216ENST00000559560 TOP2BQ02880 1626 aa39.37■■■■□ 3.89
PBX1-216ENST00000559560 SYNJ1O43426 1573 aa39.31■■■■□ 3.88
PBX1-216ENST00000559560 TDRD9Q8NDG6 1382 aaKnown RBP39.3■■■■□ 3.88
PBX1-216ENST00000559560 OSCARQ8IYS5 282 aa39.26■■■■□ 3.88
PBX1-216ENST00000559560 ABCA10Q8WWZ4 1543 aa39.24■■■■□ 3.87
PBX1-216ENST00000559560 GRIN2BQ13224 1484 aa39.14■■■■□ 3.86
PBX1-216ENST00000559560 GAPVD1Q14C86 1478 aa39.11■■■■□ 3.85
PBX1-216ENST00000559560 ABCA5Q8WWZ7 1642 aa39.11■■■■□ 3.85
PBX1-216ENST00000559560 SNAPC4Q5SXM2 1469 aa39.08■■■■□ 3.85
PBX1-216ENST00000559560 MAGI1Q96QZ7 1491 aaPredicted RBP39.08■■■■□ 3.85
PBX1-216ENST00000559560 CHD1O14646 1710 aa39.08■■■■□ 3.85
PBX1-216ENST00000559560 PBRM1Q86U86 1689 aa39.06■■■■□ 3.84
PBX1-216ENST00000559560 FBLN2P98095 1184 aa38.94■■■■□ 3.82
PBX1-216ENST00000559560 SYNJ2O15056 1496 aa38.91■■■■□ 3.82
PBX1-216ENST00000559560 CHMP7Q8WUX9 453 aaPredicted RBP38.86■■■■□ 3.81
PBX1-216ENST00000559560 ERICH3Q5RHP9 1530 aa38.8■■■■□ 3.8
PBX1-216ENST00000559560 ADAMTS12P58397 1594 aa38.74■■■■□ 3.79
PBX1-216ENST00000559560 FHAD1B1AJZ9 1412 aa38.67■■■■□ 3.78
PBX1-216ENST00000559560 CLASP1Q7Z460 1538 aa38.66■■■■□ 3.78
PBX1-216ENST00000559560 RIMBP3CA6NJZ7 1639 aa38.66■■■■□ 3.78
PBX1-216ENST00000559560 RIMBP3BA6NNM3 1639 aa38.66■■■■□ 3.78
PBX1-216ENST00000559560 RIMBP3Q9UFD9 1639 aa38.66■■■■□ 3.78
PBX1-216ENST00000559560 ARHGEF11O15085 1522 aa38.63■■■■□ 3.78
PBX1-216ENST00000559560 KIF27Q86VH2 1401 aa38.63■■■■□ 3.77
PBX1-216ENST00000559560 GRIN2AQ12879 1464 aa38.62■■■■□ 3.77
PBX1-216ENST00000559560 NUP160Q12769 1436 aa38.46■■■■□ 3.75
PBX1-216ENST00000559560 TRIM41Q8WV44 630 aa38.45■■■■□ 3.75
PBX1-216ENST00000559560 CUL7Q14999 1698 aa38.44■■■■□ 3.74
PBX1-216ENST00000559560 IGF1RP08069 1367 aa38.44■■■■□ 3.74
PBX1-216ENST00000559560 CEP170Q5SW79 1584 aa38.42■■■■□ 3.74
PBX1-216ENST00000559560 ARAP1Q96P48 1450 aa38.3■■■■□ 3.72
PBX1-216ENST00000559560 CARMIL1Q5VZK9 1371 aa38.22■■■■□ 3.71
PBX1-216ENST00000559560 CYB5RLQ6IPT4 315 aa38.22■■■■□ 3.71
PBX1-216ENST00000559560 SHROOM2Q13796 1616 aa38.21■■■■□ 3.71
PBX1-216ENST00000559560 RUSC2Q8N2Y8 1516 aa38.17■■■■□ 3.7
PBX1-216ENST00000559560 KIAA0586Q9BVV6 1533 aa38.07■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms