RNA–Protein interactions for RNA: ENST00000559401.1

SNX1-207, Transcript of sorting nexin 1, humanhuman

TSL 2

Gene SNX1, Length 408 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-207ENST00000559401 NISCHQ9Y2I1 1504 aa20.02■□□□□ 0.79
SNX1-207ENST00000559401 CCDC180Q9P1Z9 1646 aa17.9■□□□□ 0.46
SNX1-207ENST00000559401 ABCC9O60706 1549 aa17.63■□□□□ 0.41
SNX1-207ENST00000559401 RB1CC1Q8TDY2 1594 aa16.9■□□□□ 0.3
SNX1-207ENST00000559401 DCAF8L2P0C7V8 631 aa16.85■□□□□ 0.29
SNX1-207ENST00000559401 NACADO15069 1562 aa16.81■□□□□ 0.28
SNX1-207ENST00000559401 ZCCHC6Q5VYS8 1495 aaKnown RBP16.66■□□□□ 0.26
SNX1-207ENST00000559401 MYO15BQ96JP2 1530 aa16.62■□□□□ 0.25
SNX1-207ENST00000559401 UNC13AQ9UPW8 1703 aa16.55■□□□□ 0.24
SNX1-207ENST00000559401 DCAF1Q9Y4B6 1507 aa16.52■□□□□ 0.24
SNX1-207ENST00000559401 PABPN1Q86U42 306 aaKnown RBP eCLIP16.43■□□□□ 0.22
SNX1-207ENST00000559401 SCRIBQ14160 1630 aa16.36■□□□□ 0.21
SNX1-207ENST00000559401 BICRAQ9NZM4 1560 aa16.35■□□□□ 0.21
SNX1-207ENST00000559401 DNAJC5BQ9UF47 199 aa16.2■□□□□ 0.18
SNX1-207ENST00000559401 SHROOM4Q9ULL8 1493 aa16.16■□□□□ 0.18
SNX1-207ENST00000559401 EIF4G1Q04637 1599 aaKnown RBP15.96■□□□□ 0.14
SNX1-207ENST00000559401 CC2D2AQ9P2K1 1620 aa15.94■□□□□ 0.14
SNX1-207ENST00000559401 CECR2Q9BXF3 1484 aa15.84■□□□□ 0.13
SNX1-207ENST00000559401 SMARCA4P51532 1647 aa15.6■□□□□ 0.09
SNX1-207ENST00000559401 BAZ1AQ9NRL2 1556 aaPredicted RBP15.55■□□□□ 0.08
SNX1-207ENST00000559401 SMARCA2P51531 1590 aa15.5■□□□□ 0.07
SNX1-207ENST00000559401 ATAD2BQ9ULI0 1458 aa15.49■□□□□ 0.07
SNX1-207ENST00000559401 NCAPD3P42695 1498 aa15.48■□□□□ 0.07
SNX1-207ENST00000559401 MROH2BQ7Z745 1585 aa15.44■□□□□ 0.06
SNX1-207ENST00000559401 HMGXB3Q12766 1538 aa15.43■□□□□ 0.06
SNX1-207ENST00000559401 BAZ1BQ9UIG0 1483 aaKnown RBP15.41■□□□□ 0.06
SNX1-207ENST00000559401 PEG3Q9GZU2 1588 aa15.39■□□□□ 0.05
SNX1-207ENST00000559401 WIZO95785 1651 aa15.31■□□□□ 0.04
SNX1-207ENST00000559401 ERCC6Q03468 1493 aa15.23■□□□□ 0.03
SNX1-207ENST00000559401 NESP48681 1621 aa15.21■□□□□ 0.02
SNX1-207ENST00000559401 RSF1Q96T23 1441 aaPredicted RBP15.19■□□□□ 0.02
SNX1-207ENST00000559401 LAMC3Q9Y6N6 1575 aa15.15■□□□□ 0.02
SNX1-207ENST00000559401 TOP2AP11388 1531 aaKnown RBP15.12■□□□□ 0.01
SNX1-207ENST00000559401 KIF21AQ7Z4S6 1674 aa15.07■□□□□ 0
SNX1-207ENST00000559401 CUX2O14529 1486 aa15.05■□□□□ -0
SNX1-207ENST00000559401 CADPSQ9ULU8 1353 aa15.04■□□□□ -0
SNX1-207ENST00000559401 PDS5BQ9NTI5 1447 aa15.03■□□□□ -0
SNX1-207ENST00000559401 THOC2Q8NI27 1593 aaKnown RBP15.01□□□□□ -0.01
SNX1-207ENST00000559401 CFTRP13569 1480 aa14.92□□□□□ -0.02
SNX1-207ENST00000559401 CCDC88BA6NC98 1476 aa14.91□□□□□ -0.02
SNX1-207ENST00000559401 CEP164Q9UPV0 1460 aa14.91□□□□□ -0.02
SNX1-207ENST00000559401 PRDM2Q13029 1718 aa14.91□□□□□ -0.02
SNX1-207ENST00000559401 FANCD2Q9BXW9 1451 aa14.9□□□□□ -0.02
SNX1-207ENST00000559401 MRC2Q9UBG0 1479 aa14.9□□□□□ -0.02
SNX1-207ENST00000559401 WDR62O43379 1518 aa14.85□□□□□ -0.03
SNX1-207ENST00000559401 SUPT5HO00267 1087 aaKnown RBP14.8□□□□□ -0.04
SNX1-207ENST00000559401 URB2Q14146 1524 aaKnown RBP14.76□□□□□ -0.05
SNX1-207ENST00000559401 DNAJC5Q9H3Z4 198 aa14.69□□□□□ -0.06
SNX1-207ENST00000559401 TOPBP1Q92547 1522 aa14.65□□□□□ -0.06
SNX1-207ENST00000559401 DNMBPQ6XZF7 1577 aa14.64□□□□□ -0.07
SNX1-207ENST00000559401 ABCC8Q09428 1581 aa14.63□□□□□ -0.07
SNX1-207ENST00000559401 IFT140Q96RY7 1462 aa14.58□□□□□ -0.08
SNX1-207ENST00000559401 ZNF608Q9ULD9 1512 aaPredicted RBP14.53□□□□□ -0.08
SNX1-207ENST00000559401 EIF4G3O43432 1585 aaKnown RBP14.51□□□□□ -0.09
SNX1-207ENST00000559401 POLA1P09884 1462 aaPredicted RBP14.51□□□□□ -0.09
SNX1-207ENST00000559401 TARBP1Q13395 1621 aaKnown RBP14.5□□□□□ -0.09
SNX1-207ENST00000559401 CUX1P39880 1505 aa14.49□□□□□ -0.09
SNX1-207ENST00000559401 FGD5Q6ZNL6 1462 aa14.48□□□□□ -0.09
SNX1-207ENST00000559401 RAD54L2Q9Y4B4 1467 aa14.46□□□□□ -0.09
SNX1-207ENST00000559401 SOGA1O94964 1423 aa14.45□□□□□ -0.1
SNX1-207ENST00000559401 AQRO60306 1485 aaKnown RBP eCLIP14.43□□□□□ -0.18e-9■■■■■ 36.3
SNX1-207ENST00000559401 TDRD9Q8NDG6 1382 aaKnown RBP14.39□□□□□ -0.11
SNX1-207ENST00000559401 OSCARQ8IYS5 282 aa14.39□□□□□ -0.11
SNX1-207ENST00000559401 CHD1O14646 1710 aa14.38□□□□□ -0.11
SNX1-207ENST00000559401 WDR97A6NE52 1622 aa14.38□□□□□ -0.11
SNX1-207ENST00000559401 BIVM-ERCC5R4GMW8 1640 aa14.37□□□□□ -0.11
SNX1-207ENST00000559401 WRNQ14191 1432 aaPredicted RBP eCLIP14.36□□□□□ -0.11
SNX1-207ENST00000559401 SYNJ1O43426 1573 aa14.35□□□□□ -0.11
SNX1-207ENST00000559401 TOP2BQ02880 1626 aa14.35□□□□□ -0.11
SNX1-207ENST00000559401 PBRM1Q86U86 1689 aa14.33□□□□□ -0.11
SNX1-207ENST00000559401 FBLN2P98095 1184 aa14.33□□□□□ -0.12
SNX1-207ENST00000559401 SNAPC4Q5SXM2 1469 aa14.32□□□□□ -0.12
SNX1-207ENST00000559401 GRIN2BQ13224 1484 aa14.31□□□□□ -0.12
SNX1-207ENST00000559401 ABCA10Q8WWZ4 1543 aa14.31□□□□□ -0.12
SNX1-207ENST00000559401 GAPVD1Q14C86 1478 aa14.29□□□□□ -0.12
SNX1-207ENST00000559401 ABCA5Q8WWZ7 1642 aa14.29□□□□□ -0.12
SNX1-207ENST00000559401 MAGI1Q96QZ7 1491 aaPredicted RBP14.27□□□□□ -0.12
SNX1-207ENST00000559401 TRIM41Q8WV44 630 aa14.25□□□□□ -0.13
SNX1-207ENST00000559401 RIMBP3CA6NJZ7 1639 aa14.23□□□□□ -0.13
SNX1-207ENST00000559401 RIMBP3BA6NNM3 1639 aa14.23□□□□□ -0.13
SNX1-207ENST00000559401 RIMBP3Q9UFD9 1639 aa14.23□□□□□ -0.13
SNX1-207ENST00000559401 CHMP7Q8WUX9 453 aaPredicted RBP14.23□□□□□ -0.13
SNX1-207ENST00000559401 SYNJ2O15056 1496 aa14.22□□□□□ -0.13
SNX1-207ENST00000559401 ARHGEF11O15085 1522 aa14.2□□□□□ -0.14
SNX1-207ENST00000559401 ADAMTS12P58397 1594 aa14.17□□□□□ -0.14
SNX1-207ENST00000559401 CLASP1Q7Z460 1538 aa14.15□□□□□ -0.14
SNX1-207ENST00000559401 ERICH3Q5RHP9 1530 aa14.14□□□□□ -0.15
SNX1-207ENST00000559401 GRIN2AQ12879 1464 aa14.12□□□□□ -0.15
SNX1-207ENST00000559401 FHAD1B1AJZ9 1412 aa14.11□□□□□ -0.15
SNX1-207ENST00000559401 KIF27Q86VH2 1401 aa14.07□□□□□ -0.16
SNX1-207ENST00000559401 CEP170Q5SW79 1584 aa14.07□□□□□ -0.16
SNX1-207ENST00000559401 ARAP1Q96P48 1450 aa14.06□□□□□ -0.16
SNX1-207ENST00000559401 CYB5RLQ6IPT4 315 aa14.06□□□□□ -0.16
SNX1-207ENST00000559401 CUL7Q14999 1698 aa14.04□□□□□ -0.16
SNX1-207ENST00000559401 NUP160Q12769 1436 aa14.03□□□□□ -0.16
SNX1-207ENST00000559401 IGF1RP08069 1367 aa13.97□□□□□ -0.17
SNX1-207ENST00000559401 SHROOM2Q13796 1616 aa13.97□□□□□ -0.17
SNX1-207ENST00000559401 RUSC2Q8N2Y8 1516 aa13.97□□□□□ -0.17
SNX1-207ENST00000559401 ERCC6L2Q5T890 1561 aa13.96□□□□□ -0.17
SNX1-207ENST00000559401 CARMIL1Q5VZK9 1371 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms