RNA–Protein interactions for RNA: ENST00000559399.5

LRRC28-213, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-213ENST00000559399 NISCHQ9Y2I1 1504 aa37.23■■■■□ 3.55
LRRC28-213ENST00000559399 CCDC180Q9P1Z9 1646 aa33.29■■■□□ 2.92
LRRC28-213ENST00000559399 ABCC9O60706 1549 aa33.24■■■□□ 2.91
LRRC28-213ENST00000559399 RB1CC1Q8TDY2 1594 aa31.68■■■□□ 2.66
LRRC28-213ENST00000559399 NACADO15069 1562 aa31.51■■■□□ 2.63
LRRC28-213ENST00000559399 DCAF8L2P0C7V8 631 aa31.38■■■□□ 2.61
LRRC28-213ENST00000559399 MYO15BQ96JP2 1530 aa31.14■■■□□ 2.58
LRRC28-213ENST00000559399 DNAJC5BQ9UF47 199 aa31.06■■■□□ 2.56
LRRC28-213ENST00000559399 PABPN1Q86U42 306 aaKnown RBP eCLIP30.99■■■□□ 2.55
LRRC28-213ENST00000559399 ZCCHC6Q5VYS8 1495 aaKnown RBP30.9■■■□□ 2.54
LRRC28-213ENST00000559399 UNC13AQ9UPW8 1703 aa30.77■■■□□ 2.52
LRRC28-213ENST00000559399 DCAF1Q9Y4B6 1507 aa30.77■■■□□ 2.52
LRRC28-213ENST00000559399 BICRAQ9NZM4 1560 aa30.71■■■□□ 2.51
LRRC28-213ENST00000559399 SHROOM4Q9ULL8 1493 aa30.42■■■□□ 2.46
LRRC28-213ENST00000559399 SCRIBQ14160 1630 aa30.37■■■□□ 2.45
LRRC28-213ENST00000559399 EIF4G1Q04637 1599 aaKnown RBP29.99■■■□□ 2.39
LRRC28-213ENST00000559399 CC2D2AQ9P2K1 1620 aa29.99■■■□□ 2.39
LRRC28-213ENST00000559399 CECR2Q9BXF3 1484 aa29.95■■■□□ 2.39
LRRC28-213ENST00000559399 NCAPD3P42695 1498 aa29.1■■■□□ 2.25
LRRC28-213ENST00000559399 ATAD2BQ9ULI0 1458 aa29.04■■■□□ 2.24
LRRC28-213ENST00000559399 SMARCA4P51532 1647 aa28.98■■■□□ 2.23
LRRC28-213ENST00000559399 SMARCA2P51531 1590 aa28.95■■■□□ 2.22
LRRC28-213ENST00000559399 BAZ1AQ9NRL2 1556 aaPredicted RBP28.9■■■□□ 2.22
LRRC28-213ENST00000559399 HMGXB3Q12766 1538 aa28.89■■■□□ 2.21
LRRC28-213ENST00000559399 BAZ1BQ9UIG0 1483 aaKnown RBP28.77■■■□□ 2.2
LRRC28-213ENST00000559399 ERCC6Q03468 1493 aa28.72■■■□□ 2.19
LRRC28-213ENST00000559399 PEG3Q9GZU2 1588 aa28.72■■■□□ 2.19
LRRC28-213ENST00000559399 MROH2BQ7Z745 1585 aa28.67■■■□□ 2.18
LRRC28-213ENST00000559399 CUX2O14529 1486 aa28.63■■■□□ 2.17
LRRC28-213ENST00000559399 NESP48681 1621 aa28.57■■■□□ 2.16
LRRC28-213ENST00000559399 DNAJC5Q9H3Z4 198 aa28.46■■■□□ 2.15
LRRC28-213ENST00000559399 LAMC3Q9Y6N6 1575 aa28.4■■■□□ 2.14
LRRC28-213ENST00000559399 PDS5BQ9NTI5 1447 aa28.28■■■□□ 2.12
LRRC28-213ENST00000559399 WIZO95785 1651 aa28.27■■■□□ 2.12
LRRC28-213ENST00000559399 CADPSQ9ULU8 1353 aa28.24■■■□□ 2.11
LRRC28-213ENST00000559399 THOC2Q8NI27 1593 aaKnown RBP28.24■■■□□ 2.11
LRRC28-213ENST00000559399 RSF1Q96T23 1441 aaPredicted RBP28.16■■■□□ 2.1
LRRC28-213ENST00000559399 KIF21AQ7Z4S6 1674 aa28.11■■■□□ 2.09
LRRC28-213ENST00000559399 MRC2Q9UBG0 1479 aa28.02■■■□□ 2.08
LRRC28-213ENST00000559399 TOP2AP11388 1531 aaKnown RBP28.01■■■□□ 2.07
LRRC28-213ENST00000559399 CFTRP13569 1480 aa27.94■■■□□ 2.06
LRRC28-213ENST00000559399 WDR62O43379 1518 aa27.93■■■□□ 2.06
LRRC28-213ENST00000559399 CEP164Q9UPV0 1460 aa27.93■■■□□ 2.06
LRRC28-213ENST00000559399 FANCD2Q9BXW9 1451 aa27.91■■■□□ 2.06
LRRC28-213ENST00000559399 CCDC88BA6NC98 1476 aa27.69■■■□□ 2.02
LRRC28-213ENST00000559399 URB2Q14146 1524 aaKnown RBP27.65■■■□□ 2.02
LRRC28-213ENST00000559399 PRDM2Q13029 1718 aa27.47■■□□□ 1.99
LRRC28-213ENST00000559399 IFT140Q96RY7 1462 aa27.38■■□□□ 1.97
LRRC28-213ENST00000559399 TOPBP1Q92547 1522 aa27.37■■□□□ 1.97
LRRC28-213ENST00000559399 ABCC8Q09428 1581 aa27.35■■□□□ 1.97
LRRC28-213ENST00000559399 OSCARQ8IYS5 282 aa27.34■■□□□ 1.97
LRRC28-213ENST00000559399 ZNF608Q9ULD9 1512 aaPredicted RBP27.3■■□□□ 1.96
LRRC28-213ENST00000559399 DNMBPQ6XZF7 1577 aa27.28■■□□□ 1.96
LRRC28-213ENST00000559399 TRIM41Q8WV44 630 aa27.27■■□□□ 1.96
LRRC28-213ENST00000559399 EIF4G3O43432 1585 aaKnown RBP27.12■■□□□ 1.93
LRRC28-213ENST00000559399 POLA1P09884 1462 aaPredicted RBP27.12■■□□□ 1.93
LRRC28-213ENST00000559399 TARBP1Q13395 1621 aaKnown RBP27.08■■□□□ 1.93
LRRC28-213ENST00000559399 AQRO60306 1485 aaKnown RBP eCLIP27.06■■□□□ 1.92
LRRC28-213ENST00000559399 RAD54L2Q9Y4B4 1467 aa27■■□□□ 1.91
LRRC28-213ENST00000559399 SOGA1O94964 1423 aa27■■□□□ 1.91
LRRC28-213ENST00000559399 SUPT5HO00267 1087 aaKnown RBP26.99■■□□□ 1.91
LRRC28-213ENST00000559399 FGD5Q6ZNL6 1462 aa26.96■■□□□ 1.91
LRRC28-213ENST00000559399 CUX1P39880 1505 aa26.94■■□□□ 1.9
LRRC28-213ENST00000559399 TDRD9Q8NDG6 1382 aaKnown RBP26.94■■□□□ 1.9
LRRC28-213ENST00000559399 RIMBP3CA6NJZ7 1639 aa26.9■■□□□ 1.9
LRRC28-213ENST00000559399 RIMBP3BA6NNM3 1639 aa26.9■■□□□ 1.9
LRRC28-213ENST00000559399 RIMBP3Q9UFD9 1639 aa26.9■■□□□ 1.9
LRRC28-213ENST00000559399 FBLN2P98095 1184 aa26.89■■□□□ 1.9
LRRC28-213ENST00000559399 ARHGEF11O15085 1522 aa26.88■■□□□ 1.89
LRRC28-213ENST00000559399 WDR97A6NE52 1622 aa26.86■■□□□ 1.89
LRRC28-213ENST00000559399 SNAPC4Q5SXM2 1469 aa26.81■■□□□ 1.88
LRRC28-213ENST00000559399 CHD1O14646 1710 aa26.8■■□□□ 1.88
LRRC28-213ENST00000559399 GRIN2BQ13224 1484 aa26.76■■□□□ 1.87
LRRC28-213ENST00000559399 MAGI1Q96QZ7 1491 aaPredicted RBP26.75■■□□□ 1.87
LRRC28-213ENST00000559399 CHMP7Q8WUX9 453 aaPredicted RBP26.72■■□□□ 1.87
LRRC28-213ENST00000559399 CYB5RLQ6IPT4 315 aa26.68■■□□□ 1.86
LRRC28-213ENST00000559399 GAPVD1Q14C86 1478 aa26.68■■□□□ 1.86
LRRC28-213ENST00000559399 ABCA10Q8WWZ4 1543 aa26.67■■□□□ 1.86
LRRC28-213ENST00000559399 SYNJ2O15056 1496 aa26.66■■□□□ 1.86
LRRC28-213ENST00000559399 ARAP1Q96P48 1450 aa26.62■■□□□ 1.85
LRRC28-213ENST00000559399 CLASP1Q7Z460 1538 aa26.61■■□□□ 1.85
LRRC28-213ENST00000559399 WRNQ14191 1432 aaPredicted RBP eCLIP26.61■■□□□ 1.85
LRRC28-213ENST00000559399 SYNJ1O43426 1573 aa26.61■■□□□ 1.85
LRRC28-213ENST00000559399 ABCA5Q8WWZ7 1642 aa26.57■■□□□ 1.84
LRRC28-213ENST00000559399 PBRM1Q86U86 1689 aa26.54■■□□□ 1.84
LRRC28-213ENST00000559399 TOP2BQ02880 1626 aa26.52■■□□□ 1.84
LRRC28-213ENST00000559399 BIVM-ERCC5R4GMW8 1640 aa26.49■■□□□ 1.83
LRRC28-213ENST00000559399 GRIN2AQ12879 1464 aa26.41■■□□□ 1.82
LRRC28-213ENST00000559399 ADAMTS12P58397 1594 aa26.39■■□□□ 1.82
LRRC28-213ENST00000559399 FHAD1B1AJZ9 1412 aa26.37■■□□□ 1.81
LRRC28-213ENST00000559399 TRHP20396 242 aaPredicted RBP26.35■■□□□ 1.81
LRRC28-213ENST00000559399 NUP160Q12769 1436 aa26.33■■□□□ 1.81
LRRC28-213ENST00000559399 ERICH3Q5RHP9 1530 aa26.33■■□□□ 1.81
LRRC28-213ENST00000559399 CEP170Q5SW79 1584 aa26.27■■□□□ 1.8
LRRC28-213ENST00000559399 ERCC6L2Q5T890 1561 aa26.18■■□□□ 1.78
LRRC28-213ENST00000559399 SHROOM2Q13796 1616 aa26.13■■□□□ 1.77
LRRC28-213ENST00000559399 KIF27Q86VH2 1401 aa26.08■■□□□ 1.77
LRRC28-213ENST00000559399 PRG4Q92954 1404 aaPredicted RBP26.05■■□□□ 1.76
LRRC28-213ENST00000559399 JPH4Q96JJ6 628 aa26.05■■□□□ 1.76
LRRC28-213ENST00000559399 IGF1RP08069 1367 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms