RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 NISCHQ9Y2I1 1504 aa10.49□□□□□ -0.73
SNX1-205ENST00000559339 CCDC180Q9P1Z9 1646 aa9.3□□□□□ -0.92
SNX1-205ENST00000559339 AEBP2Q6ZN18 517 aaPredicted RBP9.29□□□□□ -0.92
SNX1-205ENST00000559339 CHIC1Q5VXU3 224 aa9.19□□□□□ -0.94
SNX1-205ENST00000559339 ABCC9O60706 1549 aa9.19□□□□□ -0.94
SNX1-205ENST00000559339 DCAF8L2P0C7V8 631 aa8.9□□□□□ -0.98
SNX1-205ENST00000559339 RB1CC1Q8TDY2 1594 aa8.82□□□□□ -1
SNX1-205ENST00000559339 NACADO15069 1562 aa8.81□□□□□ -1
SNX1-205ENST00000559339 MYO15BQ96JP2 1530 aa8.75□□□□□ -1.01
SNX1-205ENST00000559339 ZCCHC6Q5VYS8 1495 aaKnown RBP8.72□□□□□ -1.01
SNX1-205ENST00000559339 DCAF1Q9Y4B6 1507 aa8.68□□□□□ -1.02
SNX1-205ENST00000559339 PABPN1Q86U42 306 aaKnown RBP eCLIP8.62□□□□□ -1.03
SNX1-205ENST00000559339 UNC13AQ9UPW8 1703 aa8.5□□□□□ -1.05
SNX1-205ENST00000559339 SCRIBQ14160 1630 aa8.5□□□□□ -1.05
SNX1-205ENST00000559339 BICRAQ9NZM4 1560 aa8.49□□□□□ -1.05
SNX1-205ENST00000559339 SHROOM4Q9ULL8 1493 aa8.48□□□□□ -1.05
SNX1-205ENST00000559339 DNAJC5BQ9UF47 199 aa8.46□□□□□ -1.06
SNX1-205ENST00000559339 EIF4G1Q04637 1599 aaKnown RBP8.31□□□□□ -1.08
SNX1-205ENST00000559339 CECR2Q9BXF3 1484 aa8.28□□□□□ -1.08
SNX1-205ENST00000559339 CC2D2AQ9P2K1 1620 aa8.28□□□□□ -1.08
SNX1-205ENST00000559339 BAZ1AQ9NRL2 1556 aaPredicted RBP8.15□□□□□ -1.1
SNX1-205ENST00000559339 NCAPD3P42695 1498 aa8.14□□□□□ -1.11
SNX1-205ENST00000559339 SMARCA2P51531 1590 aa8.13□□□□□ -1.11
SNX1-205ENST00000559339 ATAD2BQ9ULI0 1458 aa8.13□□□□□ -1.11
SNX1-205ENST00000559339 SMARCA4P51532 1647 aa8.12□□□□□ -1.11
SNX1-205ENST00000559339 BAZ1BQ9UIG0 1483 aaKnown RBP8.07□□□□□ -1.12
SNX1-205ENST00000559339 MROH2BQ7Z745 1585 aa8.07□□□□□ -1.12
SNX1-205ENST00000559339 HMGXB3Q12766 1538 aa8.07□□□□□ -1.12
SNX1-205ENST00000559339 PHF23Q9BUL5 403 aaPredicted RBP8.05□□□□□ -1.12
SNX1-205ENST00000559339 PEG3Q9GZU2 1588 aa8.05□□□□□ -1.12
SNX1-205ENST00000559339 RSF1Q96T23 1441 aaPredicted RBP8□□□□□ -1.13
SNX1-205ENST00000559339 ERCC6Q03468 1493 aa7.98□□□□□ -1.13
SNX1-205ENST00000559339 SENP3Q9H4L4 574 aaPredicted RBP7.97□□□□□ -1.13
SNX1-205ENST00000559339 WIZO95785 1651 aa7.95□□□□□ -1.14
SNX1-205ENST00000559339 CADPSQ9ULU8 1353 aa7.93□□□□□ -1.14
SNX1-205ENST00000559339 PDS5BQ9NTI5 1447 aa7.92□□□□□ -1.14
SNX1-205ENST00000559339 NESP48681 1621 aa7.92□□□□□ -1.14
SNX1-205ENST00000559339 LAMC3Q9Y6N6 1575 aa7.91□□□□□ -1.14
SNX1-205ENST00000559339 TOP2AP11388 1531 aaKnown RBP7.9□□□□□ -1.14
SNX1-205ENST00000559339 CUX2O14529 1486 aa7.87□□□□□ -1.15
SNX1-205ENST00000559339 CFTRP13569 1480 aa7.85□□□□□ -1.15
SNX1-205ENST00000559339 SUPT5HO00267 1087 aaKnown RBP7.83□□□□□ -1.16
SNX1-205ENST00000559339 CCDC88BA6NC98 1476 aa7.82□□□□□ -1.16
SNX1-205ENST00000559339 FANCD2Q9BXW9 1451 aa7.81□□□□□ -1.16
SNX1-205ENST00000559339 CEP164Q9UPV0 1460 aa7.81□□□□□ -1.16
SNX1-205ENST00000559339 MRC2Q9UBG0 1479 aa7.8□□□□□ -1.16
SNX1-205ENST00000559339 KIF21AQ7Z4S6 1674 aa7.77□□□□□ -1.17
SNX1-205ENST00000559339 THOC2Q8NI27 1593 aaKnown RBP7.76□□□□□ -1.17
SNX1-205ENST00000559339 WDR62O43379 1518 aa7.75□□□□□ -1.17
SNX1-205ENST00000559339 ABCC8Q09428 1581 aa7.71□□□□□ -1.18
SNX1-205ENST00000559339 DNAJC5Q9H3Z4 198 aa7.7□□□□□ -1.18
SNX1-205ENST00000559339 URB2Q14146 1524 aaKnown RBP7.69□□□□□ -1.18
SNX1-205ENST00000559339 PRDM2Q13029 1718 aa7.67□□□□□ -1.18
SNX1-205ENST00000559339 TOPBP1Q92547 1522 aa7.66□□□□□ -1.18
SNX1-205ENST00000559339 IFT140Q96RY7 1462 aa7.65□□□□□ -1.18
SNX1-205ENST00000559339 DNMBPQ6XZF7 1577 aa7.64□□□□□ -1.19
SNX1-205ENST00000559339 OSCARQ8IYS5 282 aa7.61□□□□□ -1.19
SNX1-205ENST00000559339 SOGA1O94964 1423 aa7.61□□□□□ -1.19
SNX1-205ENST00000559339 POLA1P09884 1462 aaPredicted RBP7.6□□□□□ -1.19
SNX1-205ENST00000559339 ZNF608Q9ULD9 1512 aaPredicted RBP7.58□□□□□ -1.2
SNX1-205ENST00000559339 FGD5Q6ZNL6 1462 aa7.57□□□□□ -1.2
SNX1-205ENST00000559339 WRNQ14191 1432 aaPredicted RBP eCLIP7.57□□□□□ -1.2
SNX1-205ENST00000559339 TDRD9Q8NDG6 1382 aaKnown RBP7.57□□□□□ -1.2
SNX1-205ENST00000559339 CUX1P39880 1505 aa7.57□□□□□ -1.2
SNX1-205ENST00000559339 AQRO60306 1485 aaKnown RBP eCLIP7.56□□□□□ -1.29e-8■■□□□ 13.5
SNX1-205ENST00000559339 RAD54L2Q9Y4B4 1467 aa7.56□□□□□ -1.2
SNX1-205ENST00000559339 FBLN2P98095 1184 aa7.56□□□□□ -1.2
SNX1-205ENST00000559339 TARBP1Q13395 1621 aaKnown RBP7.54□□□□□ -1.2
SNX1-205ENST00000559339 PLPPR3Q6T4P5 718 aa7.54□□□□□ -1.2
SNX1-205ENST00000559339 CHMP7Q8WUX9 453 aaPredicted RBP7.53□□□□□ -1.2
SNX1-205ENST00000559339 EIF4G3O43432 1585 aaKnown RBP7.53□□□□□ -1.2
SNX1-205ENST00000559339 WDR97A6NE52 1622 aa7.52□□□□□ -1.21
SNX1-205ENST00000559339 GRIN2BQ13224 1484 aa7.51□□□□□ -1.21
SNX1-205ENST00000559339 ABCA10Q8WWZ4 1543 aa7.51□□□□□ -1.21
SNX1-205ENST00000559339 GAPVD1Q14C86 1478 aa7.5□□□□□ -1.21
SNX1-205ENST00000559339 TOP2BQ02880 1626 aa7.5□□□□□ -1.21
SNX1-205ENST00000559339 SNAPC4Q5SXM2 1469 aa7.49□□□□□ -1.21
SNX1-205ENST00000559339 MAGI1Q96QZ7 1491 aaPredicted RBP7.49□□□□□ -1.21
SNX1-205ENST00000559339 SYNJ1O43426 1573 aa7.47□□□□□ -1.21
SNX1-205ENST00000559339 BIVM-ERCC5R4GMW8 1640 aa7.46□□□□□ -1.21
SNX1-205ENST00000559339 SYNJ2O15056 1496 aa7.46□□□□□ -1.22
SNX1-205ENST00000559339 TRIM41Q8WV44 630 aa7.45□□□□□ -1.22
SNX1-205ENST00000559339 ABCA5Q8WWZ7 1642 aa7.43□□□□□ -1.22
SNX1-205ENST00000559339 FHAD1B1AJZ9 1412 aa7.43□□□□□ -1.22
SNX1-205ENST00000559339 KIF27Q86VH2 1401 aa7.43□□□□□ -1.22
SNX1-205ENST00000559339 ERICH3Q5RHP9 1530 aa7.42□□□□□ -1.22
SNX1-205ENST00000559339 CYB5RLQ6IPT4 315 aa7.41□□□□□ -1.22
SNX1-205ENST00000559339 CHD1O14646 1710 aa7.41□□□□□ -1.22
SNX1-205ENST00000559339 ARHGEF11O15085 1522 aa7.4□□□□□ -1.22
SNX1-205ENST00000559339 PBRM1Q86U86 1689 aa7.4□□□□□ -1.23
SNX1-205ENST00000559339 GRIN2AQ12879 1464 aa7.39□□□□□ -1.23
SNX1-205ENST00000559339 IGF1RP08069 1367 aa7.38□□□□□ -1.23
SNX1-205ENST00000559339 RIMBP3CA6NJZ7 1639 aa7.37□□□□□ -1.23
SNX1-205ENST00000559339 RIMBP3BA6NNM3 1639 aa7.37□□□□□ -1.23
SNX1-205ENST00000559339 RIMBP3Q9UFD9 1639 aa7.37□□□□□ -1.23
SNX1-205ENST00000559339 ADAMTS12P58397 1594 aa7.37□□□□□ -1.23
SNX1-205ENST00000559339 NUP160Q12769 1436 aa7.36□□□□□ -1.23
SNX1-205ENST00000559339 CLASP1Q7Z460 1538 aa7.36□□□□□ -1.23
SNX1-205ENST00000559339 CARMIL1Q5VZK9 1371 aa7.35□□□□□ -1.23
SNX1-205ENST00000559339 JPH4Q96JJ6 628 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms