RNA–Protein interactions for RNA: ENST00000559276.5

USP3-212, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-212ENST00000559276 NISCHQ9Y2I1 1504 aa14.77□□□□□ -0.04
USP3-212ENST00000559276 ABCC9O60706 1549 aa13.29□□□□□ -0.28
USP3-212ENST00000559276 CCDC180Q9P1Z9 1646 aa13.27□□□□□ -0.29
USP3-212ENST00000559276 RB1CC1Q8TDY2 1594 aa12.61□□□□□ -0.39
USP3-212ENST00000559276 DNAJC5BQ9UF47 199 aa12.55□□□□□ -0.4
USP3-212ENST00000559276 NACADO15069 1562 aa12.53□□□□□ -0.4
USP3-212ENST00000559276 UNC13AQ9UPW8 1703 aa12.42□□□□□ -0.42
USP3-212ENST00000559276 DCAF8L2P0C7V8 631 aa12.38□□□□□ -0.43
USP3-212ENST00000559276 MYO15BQ96JP2 1530 aa12.37□□□□□ -0.43
USP3-212ENST00000559276 PABPN1Q86U42 306 aaKnown RBP eCLIP12.35□□□□□ -0.43
USP3-212ENST00000559276 BICRAQ9NZM4 1560 aa12.33□□□□□ -0.44
USP3-212ENST00000559276 ZCCHC6Q5VYS8 1495 aaKnown RBP12.24□□□□□ -0.45
USP3-212ENST00000559276 DCAF1Q9Y4B6 1507 aa12.2□□□□□ -0.46
USP3-212ENST00000559276 SCRIBQ14160 1630 aa12.08□□□□□ -0.48
USP3-212ENST00000559276 SHROOM4Q9ULL8 1493 aa12.08□□□□□ -0.48
USP3-212ENST00000559276 CC2D2AQ9P2K1 1620 aa12.03□□□□□ -0.48
USP3-212ENST00000559276 EIF4G1Q04637 1599 aaKnown RBP11.99□□□□□ -0.49
USP3-212ENST00000559276 CECR2Q9BXF3 1484 aa11.95□□□□□ -0.5
USP3-212ENST00000559276 NCAPD3P42695 1498 aa11.58□□□□□ -0.56
USP3-212ENST00000559276 ATAD2BQ9ULI0 1458 aa11.55□□□□□ -0.56
USP3-212ENST00000559276 SMARCA4P51532 1647 aa11.53□□□□□ -0.56
USP3-212ENST00000559276 HMGXB3Q12766 1538 aa11.5□□□□□ -0.57
USP3-212ENST00000559276 DNAJC5Q9H3Z4 198 aa11.49□□□□□ -0.57
USP3-212ENST00000559276 SMARCA2P51531 1590 aa11.48□□□□□ -0.57
USP3-212ENST00000559276 BAZ1AQ9NRL2 1556 aaPredicted RBP11.45□□□□□ -0.58
USP3-212ENST00000559276 CUX2O14529 1486 aa11.44□□□□□ -0.58
USP3-212ENST00000559276 NESP48681 1621 aa11.44□□□□□ -0.58
USP3-212ENST00000559276 PEG3Q9GZU2 1588 aa11.44□□□□□ -0.58
USP3-212ENST00000559276 ERCC6Q03468 1493 aa11.41□□□□□ -0.58
USP3-212ENST00000559276 BAZ1BQ9UIG0 1483 aaKnown RBP11.4□□□□□ -0.58
USP3-212ENST00000559276 MROH2BQ7Z745 1585 aa11.4□□□□□ -0.58
USP3-212ENST00000559276 THOC2Q8NI27 1593 aaKnown RBP11.34□□□□□ -0.59
USP3-212ENST00000559276 LAMC3Q9Y6N6 1575 aa11.31□□□□□ -0.6
USP3-212ENST00000559276 KIF21AQ7Z4S6 1674 aa11.29□□□□□ -0.6
USP3-212ENST00000559276 WIZO95785 1651 aa11.27□□□□□ -0.61
USP3-212ENST00000559276 PDS5BQ9NTI5 1447 aa11.21□□□□□ -0.61
USP3-212ENST00000559276 CADPSQ9ULU8 1353 aa11.21□□□□□ -0.61
USP3-212ENST00000559276 WDR62O43379 1518 aa11.15□□□□□ -0.62
USP3-212ENST00000559276 MRC2Q9UBG0 1479 aa11.15□□□□□ -0.62
USP3-212ENST00000559276 RSF1Q96T23 1441 aaPredicted RBP11.14□□□□□ -0.63
USP3-212ENST00000559276 CFTRP13569 1480 aa11.1□□□□□ -0.63
USP3-212ENST00000559276 TOP2AP11388 1531 aaKnown RBP11.09□□□□□ -0.63
USP3-212ENST00000559276 FANCD2Q9BXW9 1451 aa11.08□□□□□ -0.64
USP3-212ENST00000559276 CEP164Q9UPV0 1460 aa11.08□□□□□ -0.64
USP3-212ENST00000559276 URB2Q14146 1524 aaKnown RBP11.04□□□□□ -0.64
USP3-212ENST00000559276 PRDM2Q13029 1718 aa11□□□□□ -0.65
USP3-212ENST00000559276 CCDC88BA6NC98 1476 aa10.98□□□□□ -0.65
USP3-212ENST00000559276 TRIM41Q8WV44 630 aa10.92□□□□□ -0.66
USP3-212ENST00000559276 ZNF608Q9ULD9 1512 aaPredicted RBP10.9□□□□□ -0.66
USP3-212ENST00000559276 TOPBP1Q92547 1522 aa10.89□□□□□ -0.67
USP3-212ENST00000559276 OSCARQ8IYS5 282 aa10.88□□□□□ -0.67
USP3-212ENST00000559276 IFT140Q96RY7 1462 aa10.87□□□□□ -0.67
USP3-212ENST00000559276 DNMBPQ6XZF7 1577 aa10.84□□□□□ -0.67
USP3-212ENST00000559276 EIF4G3O43432 1585 aaKnown RBP10.83□□□□□ -0.68
USP3-212ENST00000559276 TARBP1Q13395 1621 aaKnown RBP10.83□□□□□ -0.68
USP3-212ENST00000559276 RIMBP3CA6NJZ7 1639 aa10.81□□□□□ -0.68
USP3-212ENST00000559276 RIMBP3BA6NNM3 1639 aa10.81□□□□□ -0.68
USP3-212ENST00000559276 RIMBP3Q9UFD9 1639 aa10.81□□□□□ -0.68
USP3-212ENST00000559276 ABCC8Q09428 1581 aa10.81□□□□□ -0.68
USP3-212ENST00000559276 AQRO60306 1485 aaKnown RBP eCLIP10.78□□□□□ -0.682e-6■■■□□ 15.2
USP3-212ENST00000559276 POLA1P09884 1462 aaPredicted RBP10.78□□□□□ -0.68
USP3-212ENST00000559276 CHD1O14646 1710 aa10.77□□□□□ -0.69
USP3-212ENST00000559276 ARHGEF11O15085 1522 aa10.77□□□□□ -0.69
USP3-212ENST00000559276 RAD54L2Q9Y4B4 1467 aa10.74□□□□□ -0.69
USP3-212ENST00000559276 CUX1P39880 1505 aa10.71□□□□□ -0.69
USP3-212ENST00000559276 FGD5Q6ZNL6 1462 aa10.7□□□□□ -0.7
USP3-212ENST00000559276 SOGA1O94964 1423 aa10.69□□□□□ -0.7
USP3-212ENST00000559276 TDRD9Q8NDG6 1382 aaKnown RBP10.69□□□□□ -0.7
USP3-212ENST00000559276 WDR97A6NE52 1622 aa10.67□□□□□ -0.7
USP3-212ENST00000559276 ARAP1Q96P48 1450 aa10.67□□□□□ -0.7
USP3-212ENST00000559276 CLASP1Q7Z460 1538 aa10.65□□□□□ -0.7
USP3-212ENST00000559276 SNAPC4Q5SXM2 1469 aa10.65□□□□□ -0.7
USP3-212ENST00000559276 CYB5RLQ6IPT4 315 aa10.64□□□□□ -0.71
USP3-212ENST00000559276 FBLN2P98095 1184 aa10.63□□□□□ -0.71
USP3-212ENST00000559276 GRIN2BQ13224 1484 aa10.61□□□□□ -0.71
USP3-212ENST00000559276 MAGI1Q96QZ7 1491 aaPredicted RBP10.61□□□□□ -0.71
USP3-212ENST00000559276 PBRM1Q86U86 1689 aa10.6□□□□□ -0.71
USP3-212ENST00000559276 ABCA5Q8WWZ7 1642 aa10.59□□□□□ -0.71
USP3-212ENST00000559276 SYNJ2O15056 1496 aa10.58□□□□□ -0.72
USP3-212ENST00000559276 ABCA10Q8WWZ4 1543 aa10.58□□□□□ -0.72
USP3-212ENST00000559276 SYNJ1O43426 1573 aa10.57□□□□□ -0.72
USP3-212ENST00000559276 GAPVD1Q14C86 1478 aa10.57□□□□□ -0.72
USP3-212ENST00000559276 CHMP7Q8WUX9 453 aaPredicted RBP10.55□□□□□ -0.72
USP3-212ENST00000559276 SUPT5HO00267 1087 aaKnown RBP10.54□□□□□ -0.72
USP3-212ENST00000559276 BIVM-ERCC5R4GMW8 1640 aa10.53□□□□□ -0.72
USP3-212ENST00000559276 TOP2BQ02880 1626 aa10.51□□□□□ -0.73
USP3-212ENST00000559276 ADAMTS12P58397 1594 aa10.5□□□□□ -0.73
USP3-212ENST00000559276 ERCC6L2Q5T890 1561 aa10.5□□□□□ -0.73
USP3-212ENST00000559276 WRNQ14191 1432 aaPredicted RBP eCLIP10.49□□□□□ -0.73
USP3-212ENST00000559276 GRIN2AQ12879 1464 aa10.49□□□□□ -0.73
USP3-212ENST00000559276 CEP170Q5SW79 1584 aa10.48□□□□□ -0.73
USP3-212ENST00000559276 TRHP20396 242 aaPredicted RBP10.48□□□□□ -0.73
USP3-212ENST00000559276 NUP160Q12769 1436 aa10.47□□□□□ -0.73
USP3-212ENST00000559276 SHROOM2Q13796 1616 aa10.45□□□□□ -0.74
USP3-212ENST00000559276 ERICH3Q5RHP9 1530 aa10.43□□□□□ -0.74
USP3-212ENST00000559276 FHAD1B1AJZ9 1412 aa10.42□□□□□ -0.74
USP3-212ENST00000559276 RUSC2Q8N2Y8 1516 aa10.36□□□□□ -0.75
USP3-212ENST00000559276 PRG4Q92954 1404 aaPredicted RBP10.34□□□□□ -0.75
USP3-212ENST00000559276 KIF13AQ9H1H9 1805 aa10.33□□□□□ -0.76
USP3-212ENST00000559276 JPH4Q96JJ6 628 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms