RNA–Protein interactions for RNA: ENST00000559080.1

CHRNA3-205, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 4

Gene CHRNA3, Length 535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-205ENST00000559080 NISCHQ9Y2I1 1504 aa28.59■■■□□ 2.17
CHRNA3-205ENST00000559080 ABCC9O60706 1549 aa26.15■■□□□ 1.78
CHRNA3-205ENST00000559080 CCDC180Q9P1Z9 1646 aa25.88■■□□□ 1.73
CHRNA3-205ENST00000559080 DNAJC5BQ9UF47 199 aa24.9■■□□□ 1.58
CHRNA3-205ENST00000559080 RB1CC1Q8TDY2 1594 aa24.76■■□□□ 1.55
CHRNA3-205ENST00000559080 NACADO15069 1562 aa24.5■■□□□ 1.51
CHRNA3-205ENST00000559080 UNC13AQ9UPW8 1703 aa24.38■■□□□ 1.49
CHRNA3-205ENST00000559080 PABPN1Q86U42 306 aaKnown RBP eCLIP24.25■■□□□ 1.47
CHRNA3-205ENST00000559080 DCAF8L2P0C7V8 631 aa24.16■■□□□ 1.46
CHRNA3-205ENST00000559080 BICRAQ9NZM4 1560 aa24.12■■□□□ 1.45
CHRNA3-205ENST00000559080 MYO15BQ96JP2 1530 aa24.05■■□□□ 1.44
CHRNA3-205ENST00000559080 SHROOM4Q9ULL8 1493 aa23.67■■□□□ 1.38
CHRNA3-205ENST00000559080 CC2D2AQ9P2K1 1620 aa23.66■■□□□ 1.38
CHRNA3-205ENST00000559080 ZCCHC6Q5VYS8 1495 aaKnown RBP23.62■■□□□ 1.37
CHRNA3-205ENST00000559080 DCAF1Q9Y4B6 1507 aa23.6■■□□□ 1.37
CHRNA3-205ENST00000559080 CECR2Q9BXF3 1484 aa23.59■■□□□ 1.37
CHRNA3-205ENST00000559080 EIF4G1Q04637 1599 aaKnown RBP23.51■■□□□ 1.35
CHRNA3-205ENST00000559080 SCRIBQ14160 1630 aa23.5■■□□□ 1.35
CHRNA3-205ENST00000559080 DNAJC5Q9H3Z4 198 aa23.09■■□□□ 1.29
CHRNA3-205ENST00000559080 CUX2O14529 1486 aa22.69■■□□□ 1.22
CHRNA3-205ENST00000559080 NCAPD3P42695 1498 aa22.61■■□□□ 1.21
CHRNA3-205ENST00000559080 ERCC6Q03468 1493 aa22.55■■□□□ 1.2
CHRNA3-205ENST00000559080 ATAD2BQ9ULI0 1458 aa22.48■■□□□ 1.19
CHRNA3-205ENST00000559080 HMGXB3Q12766 1538 aa22.42■■□□□ 1.18
CHRNA3-205ENST00000559080 SMARCA4P51532 1647 aa22.42■■□□□ 1.18
CHRNA3-205ENST00000559080 NESP48681 1621 aa22.4■■□□□ 1.18
CHRNA3-205ENST00000559080 SMARCA2P51531 1590 aa22.4■■□□□ 1.18
CHRNA3-205ENST00000559080 THOC2Q8NI27 1593 aaKnown RBP22.29■■□□□ 1.16
CHRNA3-205ENST00000559080 BAZ1BQ9UIG0 1483 aaKnown RBP22.22■■□□□ 1.15
CHRNA3-205ENST00000559080 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
CHRNA3-205ENST00000559080 BAZ1AQ9NRL2 1556 aaPredicted RBP22.21■■□□□ 1.15
CHRNA3-205ENST00000559080 LAMC3Q9Y6N6 1575 aa22.18■■□□□ 1.14
CHRNA3-205ENST00000559080 KIF21AQ7Z4S6 1674 aa22.17■■□□□ 1.14
CHRNA3-205ENST00000559080 MROH2BQ7Z745 1585 aa22.04■■□□□ 1.12
CHRNA3-205ENST00000559080 PDS5BQ9NTI5 1447 aa21.98■■□□□ 1.11
CHRNA3-205ENST00000559080 CADPSQ9ULU8 1353 aa21.87■■□□□ 1.09
CHRNA3-205ENST00000559080 WDR62O43379 1518 aa21.86■■□□□ 1.09
CHRNA3-205ENST00000559080 TRIM41Q8WV44 630 aa21.86■■□□□ 1.09
CHRNA3-205ENST00000559080 MRC2Q9UBG0 1479 aa21.85■■□□□ 1.09
CHRNA3-205ENST00000559080 WIZO95785 1651 aa21.81■■□□□ 1.08
CHRNA3-205ENST00000559080 CEP164Q9UPV0 1460 aa21.69■■□□□ 1.06
CHRNA3-205ENST00000559080 FANCD2Q9BXW9 1451 aa21.64■■□□□ 1.05
CHRNA3-205ENST00000559080 CFTRP13569 1480 aa21.58■■□□□ 1.04
CHRNA3-205ENST00000559080 OSCARQ8IYS5 282 aa21.54■■□□□ 1.04
CHRNA3-205ENST00000559080 URB2Q14146 1524 aaKnown RBP21.52■■□□□ 1.04
CHRNA3-205ENST00000559080 PRDM2Q13029 1718 aa21.48■■□□□ 1.03
CHRNA3-205ENST00000559080 TOP2AP11388 1531 aaKnown RBP21.45■■□□□ 1.02
CHRNA3-205ENST00000559080 RIMBP3CA6NJZ7 1639 aa21.42■■□□□ 1.02
CHRNA3-205ENST00000559080 RIMBP3BA6NNM3 1639 aa21.42■■□□□ 1.02
CHRNA3-205ENST00000559080 RIMBP3Q9UFD9 1639 aa21.42■■□□□ 1.02
CHRNA3-205ENST00000559080 RSF1Q96T23 1441 aaPredicted RBP21.41■■□□□ 1.02
CHRNA3-205ENST00000559080 ZNF608Q9ULD9 1512 aaPredicted RBP21.31■■□□□ 1
CHRNA3-205ENST00000559080 ARHGEF11O15085 1522 aa21.28■■□□□ 1
CHRNA3-205ENST00000559080 IFT140Q96RY7 1462 aa21.26■□□□□ 0.99
CHRNA3-205ENST00000559080 TOPBP1Q92547 1522 aa21.21■□□□□ 0.99
CHRNA3-205ENST00000559080 EIF4G3O43432 1585 aaKnown RBP21.2■□□□□ 0.98
CHRNA3-205ENST00000559080 CCDC88BA6NC98 1476 aa21.2■□□□□ 0.98
CHRNA3-205ENST00000559080 CHD1O14646 1710 aa21.18■□□□□ 0.98
CHRNA3-205ENST00000559080 TARBP1Q13395 1621 aaKnown RBP21.11■□□□□ 0.97
CHRNA3-205ENST00000559080 ABCC8Q09428 1581 aa21.1■□□□□ 0.97
CHRNA3-205ENST00000559080 DNMBPQ6XZF7 1577 aa21.1■□□□□ 0.97
CHRNA3-205ENST00000559080 CYB5RLQ6IPT4 315 aa21.07■□□□□ 0.96
CHRNA3-205ENST00000559080 AQRO60306 1485 aaKnown RBP eCLIP21.04■□□□□ 0.96
CHRNA3-205ENST00000559080 ARAP1Q96P48 1450 aa21.04■□□□□ 0.96
CHRNA3-205ENST00000559080 POLA1P09884 1462 aaPredicted RBP20.97■□□□□ 0.95
CHRNA3-205ENST00000559080 TRHP20396 242 aaPredicted RBP20.91■□□□□ 0.94
CHRNA3-205ENST00000559080 RAD54L2Q9Y4B4 1467 aa20.89■□□□□ 0.94
CHRNA3-205ENST00000559080 FBLN2P98095 1184 aa20.89■□□□□ 0.93
CHRNA3-205ENST00000559080 CLASP1Q7Z460 1538 aa20.86■□□□□ 0.93
CHRNA3-205ENST00000559080 TDRD9Q8NDG6 1382 aaKnown RBP20.84■□□□□ 0.93
CHRNA3-205ENST00000559080 WDR97A6NE52 1622 aa20.83■□□□□ 0.93
CHRNA3-205ENST00000559080 SOGA1O94964 1423 aa20.82■□□□□ 0.92
CHRNA3-205ENST00000559080 SNAPC4Q5SXM2 1469 aa20.81■□□□□ 0.92
CHRNA3-205ENST00000559080 SYNJ1O43426 1573 aa20.78■□□□□ 0.92
CHRNA3-205ENST00000559080 FGD5Q6ZNL6 1462 aa20.78■□□□□ 0.92
CHRNA3-205ENST00000559080 MAGI1Q96QZ7 1491 aaPredicted RBP20.75■□□□□ 0.91
CHRNA3-205ENST00000559080 CUX1P39880 1505 aa20.73■□□□□ 0.91
CHRNA3-205ENST00000559080 PBRM1Q86U86 1689 aa20.71■□□□□ 0.91
CHRNA3-205ENST00000559080 GRIN2BQ13224 1484 aa20.69■□□□□ 0.9
CHRNA3-205ENST00000559080 CHMP7Q8WUX9 453 aaPredicted RBP20.69■□□□□ 0.9
CHRNA3-205ENST00000559080 SYNJ2O15056 1496 aa20.68■□□□□ 0.9
CHRNA3-205ENST00000559080 GAPVD1Q14C86 1478 aa20.61■□□□□ 0.89
CHRNA3-205ENST00000559080 ABCA5Q8WWZ7 1642 aa20.58■□□□□ 0.89
CHRNA3-205ENST00000559080 AEBP2Q6ZN18 517 aaPredicted RBP20.55■□□□□ 0.88
CHRNA3-205ENST00000559080 ERCC6L2Q5T890 1561 aa20.53■□□□□ 0.88
CHRNA3-205ENST00000559080 ABCA10Q8WWZ4 1543 aa20.53■□□□□ 0.88
CHRNA3-205ENST00000559080 GRIN2AQ12879 1464 aa20.45■□□□□ 0.86
CHRNA3-205ENST00000559080 CEP170Q5SW79 1584 aa20.44■□□□□ 0.86
CHRNA3-205ENST00000559080 SHROOM2Q13796 1616 aa20.43■□□□□ 0.86
CHRNA3-205ENST00000559080 KIF13AQ9H1H9 1805 aa20.43■□□□□ 0.86
CHRNA3-205ENST00000559080 ADAMTS12P58397 1594 aa20.42■□□□□ 0.86
CHRNA3-205ENST00000559080 NUP160Q12769 1436 aa20.4■□□□□ 0.86
CHRNA3-205ENST00000559080 BIVM-ERCC5R4GMW8 1640 aa20.35■□□□□ 0.85
CHRNA3-205ENST00000559080 WRNQ14191 1432 aaPredicted RBP eCLIP20.31■□□□□ 0.84
CHRNA3-205ENST00000559080 TOP2BQ02880 1626 aa20.31■□□□□ 0.84
CHRNA3-205ENST00000559080 FHAD1B1AJZ9 1412 aa20.29■□□□□ 0.84
CHRNA3-205ENST00000559080 ERICH3Q5RHP9 1530 aa20.26■□□□□ 0.83
CHRNA3-205ENST00000559080 PRG4Q92954 1404 aaPredicted RBP20.19■□□□□ 0.82
CHRNA3-205ENST00000559080 RUSC2Q8N2Y8 1516 aa20.16■□□□□ 0.82
CHRNA3-205ENST00000559080 JPH4Q96JJ6 628 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms