RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 NISCHQ9Y2I1 1504 aa23.4■■□□□ 1.34
SPG11-214ENST00000558989 CCDC180Q9P1Z9 1646 aa20.82■□□□□ 0.92
SPG11-214ENST00000558989 ABCC9O60706 1549 aa20.57■□□□□ 0.88
SPG11-214ENST00000558989 DCAF8L2P0C7V8 631 aa19.79■□□□□ 0.76
SPG11-214ENST00000558989 RB1CC1Q8TDY2 1594 aa19.66■□□□□ 0.74
SPG11-214ENST00000558989 NACADO15069 1562 aa19.57■□□□□ 0.72
SPG11-214ENST00000558989 ZCCHC6Q5VYS8 1495 aaKnown RBP19.46■□□□□ 0.71
SPG11-214ENST00000558989 CHIC1Q5VXU3 224 aa19.35■□□□□ 0.69
SPG11-214ENST00000558989 UNC13AQ9UPW8 1703 aa19.34■□□□□ 0.69
SPG11-214ENST00000558989 MYO15BQ96JP2 1530 aa19.32■□□□□ 0.68
SPG11-214ENST00000558989 DCAF1Q9Y4B6 1507 aa19.25■□□□□ 0.67
SPG11-214ENST00000558989 PABPN1Q86U42 306 aaKnown RBP eCLIP19.24■□□□□ 0.67
SPG11-214ENST00000558989 SCRIBQ14160 1630 aa19.13■□□□□ 0.65
SPG11-214ENST00000558989 BICRAQ9NZM4 1560 aa19.08■□□□□ 0.64
SPG11-214ENST00000558989 DNAJC5BQ9UF47 199 aa18.93■□□□□ 0.62
SPG11-214ENST00000558989 SHROOM4Q9ULL8 1493 aa18.7■□□□□ 0.58
SPG11-214ENST00000558989 EIF4G1Q04637 1599 aaKnown RBP18.59■□□□□ 0.57
SPG11-214ENST00000558989 CC2D2AQ9P2K1 1620 aa18.57■□□□□ 0.56
SPG11-214ENST00000558989 CECR2Q9BXF3 1484 aa18.43■□□□□ 0.54
SPG11-214ENST00000558989 SMARCA4P51532 1647 aa18.21■□□□□ 0.51
SPG11-214ENST00000558989 AEBP2Q6ZN18 517 aaPredicted RBP18.14■□□□□ 0.5
SPG11-214ENST00000558989 BAZ1AQ9NRL2 1556 aaPredicted RBP18.14■□□□□ 0.49
SPG11-214ENST00000558989 ATAD2BQ9ULI0 1458 aa18.09■□□□□ 0.49
SPG11-214ENST00000558989 MROH2BQ7Z745 1585 aa18.09■□□□□ 0.49
SPG11-214ENST00000558989 SMARCA2P51531 1590 aa18.05■□□□□ 0.48
SPG11-214ENST00000558989 NCAPD3P42695 1498 aa18.04■□□□□ 0.48
SPG11-214ENST00000558989 BAZ1BQ9UIG0 1483 aaKnown RBP17.98■□□□□ 0.47
SPG11-214ENST00000558989 HMGXB3Q12766 1538 aa17.96■□□□□ 0.47
SPG11-214ENST00000558989 WIZO95785 1651 aa17.95■□□□□ 0.46
SPG11-214ENST00000558989 PEG3Q9GZU2 1588 aa17.93■□□□□ 0.46
SPG11-214ENST00000558989 RSF1Q96T23 1441 aaPredicted RBP17.81■□□□□ 0.44
SPG11-214ENST00000558989 NESP48681 1621 aa17.78■□□□□ 0.44
SPG11-214ENST00000558989 ERCC6Q03468 1493 aa17.72■□□□□ 0.43
SPG11-214ENST00000558989 TOP2AP11388 1531 aaKnown RBP17.65■□□□□ 0.42
SPG11-214ENST00000558989 LAMC3Q9Y6N6 1575 aa17.62■□□□□ 0.41
SPG11-214ENST00000558989 SLC24A1O60721 1099 aa17.61■□□□□ 0.41
SPG11-214ENST00000558989 KIF21AQ7Z4S6 1674 aa17.6■□□□□ 0.41
SPG11-214ENST00000558989 CADPSQ9ULU8 1353 aa17.55■□□□□ 0.4
SPG11-214ENST00000558989 PDS5BQ9NTI5 1447 aa17.5■□□□□ 0.39
SPG11-214ENST00000558989 SUPT5HO00267 1087 aaKnown RBP17.48■□□□□ 0.39
SPG11-214ENST00000558989 CCDC88BA6NC98 1476 aa17.48■□□□□ 0.39
SPG11-214ENST00000558989 THOC2Q8NI27 1593 aaKnown RBP17.47■□□□□ 0.39
SPG11-214ENST00000558989 CUX2O14529 1486 aa17.44■□□□□ 0.38
SPG11-214ENST00000558989 CFTRP13569 1480 aa17.41■□□□□ 0.38
SPG11-214ENST00000558989 FANCD2Q9BXW9 1451 aa17.39■□□□□ 0.37
SPG11-214ENST00000558989 PRDM2Q13029 1718 aa17.39■□□□□ 0.37
SPG11-214ENST00000558989 CEP164Q9UPV0 1460 aa17.37■□□□□ 0.37
SPG11-214ENST00000558989 MRC2Q9UBG0 1479 aa17.34■□□□□ 0.37
SPG11-214ENST00000558989 WDR62O43379 1518 aa17.27■□□□□ 0.36
SPG11-214ENST00000558989 URB2Q14146 1524 aaKnown RBP17.23■□□□□ 0.35
SPG11-214ENST00000558989 PHF23Q9BUL5 403 aaPredicted RBP17.2■□□□□ 0.34
SPG11-214ENST00000558989 EHMT2Q96KQ7 1210 aa17.19■□□□□ 0.34
SPG11-214ENST00000558989 TOPBP1Q92547 1522 aa17.11■□□□□ 0.33
SPG11-214ENST00000558989 DNMBPQ6XZF7 1577 aa17.07■□□□□ 0.32
SPG11-214ENST00000558989 DNAJC5Q9H3Z4 198 aa17.03■□□□□ 0.32
SPG11-214ENST00000558989 ABCC8Q09428 1581 aa17.02■□□□□ 0.31
SPG11-214ENST00000558989 ZNF608Q9ULD9 1512 aaPredicted RBP16.99■□□□□ 0.31
SPG11-214ENST00000558989 IFT140Q96RY7 1462 aa16.97■□□□□ 0.31
SPG11-214ENST00000558989 CUX1P39880 1505 aa16.96■□□□□ 0.31
SPG11-214ENST00000558989 POLA1P09884 1462 aaPredicted RBP16.95■□□□□ 0.3
SPG11-214ENST00000558989 RAD54L2Q9Y4B4 1467 aa16.95■□□□□ 0.3
SPG11-214ENST00000558989 FGD5Q6ZNL6 1462 aa16.93■□□□□ 0.3
SPG11-214ENST00000558989 TARBP1Q13395 1621 aaKnown RBP16.92■□□□□ 0.3
SPG11-214ENST00000558989 EIF4G3O43432 1585 aaKnown RBP16.91■□□□□ 0.3
SPG11-214ENST00000558989 SOGA1O94964 1423 aa16.89■□□□□ 0.29
SPG11-214ENST00000558989 AQRO60306 1485 aaKnown RBP eCLIP16.89■□□□□ 0.295e-13■■■■■ 35.4
SPG11-214ENST00000558989 TDRD9Q8NDG6 1382 aaKnown RBP16.85■□□□□ 0.29
SPG11-214ENST00000558989 SYNJ1O43426 1573 aa16.83■□□□□ 0.28
SPG11-214ENST00000558989 WRNQ14191 1432 aaPredicted RBP eCLIP16.81■□□□□ 0.28
SPG11-214ENST00000558989 WDR97A6NE52 1622 aa16.78■□□□□ 0.28
SPG11-214ENST00000558989 BIVM-ERCC5R4GMW8 1640 aa16.78■□□□□ 0.28
SPG11-214ENST00000558989 CHD1O14646 1710 aa16.78■□□□□ 0.28
SPG11-214ENST00000558989 FBLN2P98095 1184 aa16.78■□□□□ 0.28
SPG11-214ENST00000558989 TOP2BQ02880 1626 aa16.77■□□□□ 0.28
SPG11-214ENST00000558989 OSCARQ8IYS5 282 aa16.77■□□□□ 0.27
SPG11-214ENST00000558989 PBRM1Q86U86 1689 aa16.74■□□□□ 0.27
SPG11-214ENST00000558989 SNAPC4Q5SXM2 1469 aa16.71■□□□□ 0.27
SPG11-214ENST00000558989 ABCA10Q8WWZ4 1543 aa16.69■□□□□ 0.26
SPG11-214ENST00000558989 GAPVD1Q14C86 1478 aa16.69■□□□□ 0.26
SPG11-214ENST00000558989 ABCA5Q8WWZ7 1642 aa16.67■□□□□ 0.26
SPG11-214ENST00000558989 GRIN2BQ13224 1484 aa16.67■□□□□ 0.26
SPG11-214ENST00000558989 CHMP7Q8WUX9 453 aaPredicted RBP16.63■□□□□ 0.25
SPG11-214ENST00000558989 TRIM41Q8WV44 630 aa16.61■□□□□ 0.25
SPG11-214ENST00000558989 MAGI1Q96QZ7 1491 aaPredicted RBP16.61■□□□□ 0.25
SPG11-214ENST00000558989 SYNJ2O15056 1496 aa16.57■□□□□ 0.24
SPG11-214ENST00000558989 RIMBP3CA6NJZ7 1639 aa16.56■□□□□ 0.24
SPG11-214ENST00000558989 RIMBP3BA6NNM3 1639 aa16.56■□□□□ 0.24
SPG11-214ENST00000558989 RIMBP3Q9UFD9 1639 aa16.56■□□□□ 0.24
SPG11-214ENST00000558989 ADAMTS12P58397 1594 aa16.53■□□□□ 0.24
SPG11-214ENST00000558989 ARHGEF11O15085 1522 aa16.51■□□□□ 0.23
SPG11-214ENST00000558989 ERICH3Q5RHP9 1530 aa16.49■□□□□ 0.23
SPG11-214ENST00000558989 GRIN2AQ12879 1464 aa16.47■□□□□ 0.23
SPG11-214ENST00000558989 CLASP1Q7Z460 1538 aa16.47■□□□□ 0.23
SPG11-214ENST00000558989 FHAD1B1AJZ9 1412 aa16.46■□□□□ 0.23
SPG11-214ENST00000558989 KIF27Q86VH2 1401 aa16.45■□□□□ 0.22
SPG11-214ENST00000558989 PLPPR3Q6T4P5 718 aa16.45■□□□□ 0.22
SPG11-214ENST00000558989 CYB5RLQ6IPT4 315 aa16.43■□□□□ 0.22
SPG11-214ENST00000558989 CEP170Q5SW79 1584 aa16.43■□□□□ 0.22
SPG11-214ENST00000558989 RUSC2Q8N2Y8 1516 aa16.38■□□□□ 0.21
SPG11-214ENST00000558989 IGF1RP08069 1367 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms