RNA–Protein interactions for RNA: ENST00000558937.1

SMAD6-203, Transcript of SMAD family member 6, humanhuman

TSL 5

Gene SMAD6, Length 632 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6-203ENST00000558937 NISCHQ9Y2I1 1504 aa37.56■■■■□ 3.6
SMAD6-203ENST00000558937 CCDC180Q9P1Z9 1646 aa33.64■■■□□ 2.98
SMAD6-203ENST00000558937 ABCC9O60706 1549 aa33.32■■■□□ 2.92
SMAD6-203ENST00000558937 RB1CC1Q8TDY2 1594 aa31.85■■■□□ 2.69
SMAD6-203ENST00000558937 NACADO15069 1562 aa31.69■■■□□ 2.66
SMAD6-203ENST00000558937 DCAF8L2P0C7V8 631 aa31.5■■■□□ 2.63
SMAD6-203ENST00000558937 MYO15BQ96JP2 1530 aa31.34■■■□□ 2.61
SMAD6-203ENST00000558937 ZCCHC6Q5VYS8 1495 aaKnown RBP31.22■■■□□ 2.59
SMAD6-203ENST00000558937 UNC13AQ9UPW8 1703 aa31.18■■■□□ 2.58
SMAD6-203ENST00000558937 DCAF1Q9Y4B6 1507 aa31.05■■■□□ 2.56
SMAD6-203ENST00000558937 PABPN1Q86U42 306 aaKnown RBP eCLIP31.02■■■□□ 2.56
SMAD6-203ENST00000558937 DNAJC5BQ9UF47 199 aa30.95■■■□□ 2.55
SMAD6-203ENST00000558937 BICRAQ9NZM4 1560 aa30.92■■■□□ 2.54
SMAD6-203ENST00000558937 SCRIBQ14160 1630 aa30.65■■■□□ 2.5
SMAD6-203ENST00000558937 SHROOM4Q9ULL8 1493 aa30.53■■■□□ 2.48
SMAD6-203ENST00000558937 EIF4G1Q04637 1599 aaKnown RBP30.14■■■□□ 2.42
SMAD6-203ENST00000558937 CC2D2AQ9P2K1 1620 aa30.13■■■□□ 2.41
SMAD6-203ENST00000558937 CECR2Q9BXF3 1484 aa29.98■■■□□ 2.39
SMAD6-203ENST00000558937 SMARCA4P51532 1647 aa29.27■■■□□ 2.28
SMAD6-203ENST00000558937 NCAPD3P42695 1498 aa29.23■■■□□ 2.27
SMAD6-203ENST00000558937 ATAD2BQ9ULI0 1458 aa29.2■■■□□ 2.26
SMAD6-203ENST00000558937 BAZ1AQ9NRL2 1556 aaPredicted RBP29.15■■■□□ 2.26
SMAD6-203ENST00000558937 SMARCA2P51531 1590 aa29.14■■■□□ 2.26
SMAD6-203ENST00000558937 HMGXB3Q12766 1538 aa29.09■■■□□ 2.25
SMAD6-203ENST00000558937 PEG3Q9GZU2 1588 aa28.97■■■□□ 2.23
SMAD6-203ENST00000558937 MROH2BQ7Z745 1585 aa28.96■■■□□ 2.23
SMAD6-203ENST00000558937 BAZ1BQ9UIG0 1483 aaKnown RBP28.93■■■□□ 2.22
SMAD6-203ENST00000558937 ERCC6Q03468 1493 aa28.73■■■□□ 2.19
SMAD6-203ENST00000558937 NESP48681 1621 aa28.71■■■□□ 2.19
SMAD6-203ENST00000558937 WIZO95785 1651 aa28.64■■■□□ 2.17
SMAD6-203ENST00000558937 CUX2O14529 1486 aa28.6■■■□□ 2.17
SMAD6-203ENST00000558937 LAMC3Q9Y6N6 1575 aa28.56■■■□□ 2.16
SMAD6-203ENST00000558937 RSF1Q96T23 1441 aaPredicted RBP28.43■■■□□ 2.14
SMAD6-203ENST00000558937 THOC2Q8NI27 1593 aaKnown RBP28.41■■■□□ 2.14
SMAD6-203ENST00000558937 KIF21AQ7Z4S6 1674 aa28.38■■■□□ 2.13
SMAD6-203ENST00000558937 CADPSQ9ULU8 1353 aa28.35■■■□□ 2.13
SMAD6-203ENST00000558937 PDS5BQ9NTI5 1447 aa28.35■■■□□ 2.13
SMAD6-203ENST00000558937 TOP2AP11388 1531 aaKnown RBP28.3■■■□□ 2.12
SMAD6-203ENST00000558937 DNAJC5Q9H3Z4 198 aa28.2■■■□□ 2.1
SMAD6-203ENST00000558937 MRC2Q9UBG0 1479 aa28.13■■■□□ 2.09
SMAD6-203ENST00000558937 CFTRP13569 1480 aa28.1■■■□□ 2.09
SMAD6-203ENST00000558937 CEP164Q9UPV0 1460 aa28.07■■■□□ 2.08
SMAD6-203ENST00000558937 WDR62O43379 1518 aa28.06■■■□□ 2.08
SMAD6-203ENST00000558937 FANCD2Q9BXW9 1451 aa28.05■■■□□ 2.08
SMAD6-203ENST00000558937 CCDC88BA6NC98 1476 aa27.94■■■□□ 2.06
SMAD6-203ENST00000558937 PRDM2Q13029 1718 aa27.92■■■□□ 2.06
SMAD6-203ENST00000558937 URB2Q14146 1524 aaKnown RBP27.82■■■□□ 2.04
SMAD6-203ENST00000558937 TOPBP1Q92547 1522 aa27.57■■■□□ 2
SMAD6-203ENST00000558937 DNMBPQ6XZF7 1577 aa27.5■■□□□ 1.99
SMAD6-203ENST00000558937 ABCC8Q09428 1581 aa27.49■■□□□ 1.99
SMAD6-203ENST00000558937 IFT140Q96RY7 1462 aa27.48■■□□□ 1.99
SMAD6-203ENST00000558937 ZNF608Q9ULD9 1512 aaPredicted RBP27.41■■□□□ 1.98
SMAD6-203ENST00000558937 SUPT5HO00267 1087 aaKnown RBP27.34■■□□□ 1.97
SMAD6-203ENST00000558937 EIF4G3O43432 1585 aaKnown RBP27.32■■□□□ 1.96
SMAD6-203ENST00000558937 TARBP1Q13395 1621 aaKnown RBP27.31■■□□□ 1.96
SMAD6-203ENST00000558937 POLA1P09884 1462 aaPredicted RBP27.3■■□□□ 1.96
SMAD6-203ENST00000558937 OSCARQ8IYS5 282 aa27.27■■□□□ 1.96
SMAD6-203ENST00000558937 CUX1P39880 1505 aa27.2■■□□□ 1.94
SMAD6-203ENST00000558937 AQRO60306 1485 aaKnown RBP eCLIP27.19■■□□□ 1.942e-9■■■■■ 47.9
SMAD6-203ENST00000558937 RAD54L2Q9Y4B4 1467 aa27.19■■□□□ 1.94
SMAD6-203ENST00000558937 FGD5Q6ZNL6 1462 aa27.18■■□□□ 1.94
SMAD6-203ENST00000558937 SOGA1O94964 1423 aa27.14■■□□□ 1.93
SMAD6-203ENST00000558937 TRIM41Q8WV44 630 aa27.1■■□□□ 1.93
SMAD6-203ENST00000558937 CHD1O14646 1710 aa27.07■■□□□ 1.92
SMAD6-203ENST00000558937 WDR97A6NE52 1622 aa27.05■■□□□ 1.92
SMAD6-203ENST00000558937 TDRD9Q8NDG6 1382 aaKnown RBP27.05■■□□□ 1.92
SMAD6-203ENST00000558937 RIMBP3CA6NJZ7 1639 aa26.98■■□□□ 1.91
SMAD6-203ENST00000558937 RIMBP3BA6NNM3 1639 aa26.98■■□□□ 1.91
SMAD6-203ENST00000558937 RIMBP3Q9UFD9 1639 aa26.98■■□□□ 1.91
SMAD6-203ENST00000558937 SNAPC4Q5SXM2 1469 aa26.95■■□□□ 1.91
SMAD6-203ENST00000558937 ARHGEF11O15085 1522 aa26.91■■□□□ 1.9
SMAD6-203ENST00000558937 FBLN2P98095 1184 aa26.91■■□□□ 1.9
SMAD6-203ENST00000558937 GRIN2BQ13224 1484 aa26.9■■□□□ 1.9
SMAD6-203ENST00000558937 MAGI1Q96QZ7 1491 aaPredicted RBP26.87■■□□□ 1.89
SMAD6-203ENST00000558937 ABCA10Q8WWZ4 1543 aa26.87■■□□□ 1.89
SMAD6-203ENST00000558937 PBRM1Q86U86 1689 aa26.87■■□□□ 1.89
SMAD6-203ENST00000558937 BIVM-ERCC5R4GMW8 1640 aa26.86■■□□□ 1.89
SMAD6-203ENST00000558937 ABCA5Q8WWZ7 1642 aa26.84■■□□□ 1.89
SMAD6-203ENST00000558937 GAPVD1Q14C86 1478 aa26.84■■□□□ 1.89
SMAD6-203ENST00000558937 TOP2BQ02880 1626 aa26.83■■□□□ 1.89
SMAD6-203ENST00000558937 SYNJ1O43426 1573 aa26.83■■□□□ 1.89
SMAD6-203ENST00000558937 WRNQ14191 1432 aaPredicted RBP eCLIP26.82■■□□□ 1.88
SMAD6-203ENST00000558937 SYNJ2O15056 1496 aa26.78■■□□□ 1.88
SMAD6-203ENST00000558937 CHMP7Q8WUX9 453 aaPredicted RBP26.76■■□□□ 1.87
SMAD6-203ENST00000558937 CLASP1Q7Z460 1538 aa26.75■■□□□ 1.87
SMAD6-203ENST00000558937 ARAP1Q96P48 1450 aa26.68■■□□□ 1.86
SMAD6-203ENST00000558937 ADAMTS12P58397 1594 aa26.63■■□□□ 1.85
SMAD6-203ENST00000558937 CYB5RLQ6IPT4 315 aa26.62■■□□□ 1.85
SMAD6-203ENST00000558937 GRIN2AQ12879 1464 aa26.56■■□□□ 1.84
SMAD6-203ENST00000558937 ERICH3Q5RHP9 1530 aa26.55■■□□□ 1.84
SMAD6-203ENST00000558937 FHAD1B1AJZ9 1412 aa26.5■■□□□ 1.83
SMAD6-203ENST00000558937 CEP170Q5SW79 1584 aa26.47■■□□□ 1.83
SMAD6-203ENST00000558937 NUP160Q12769 1436 aa26.47■■□□□ 1.83
SMAD6-203ENST00000558937 ERCC6L2Q5T890 1561 aa26.35■■□□□ 1.81
SMAD6-203ENST00000558937 SHROOM2Q13796 1616 aa26.34■■□□□ 1.81
SMAD6-203ENST00000558937 KIF27Q86VH2 1401 aa26.29■■□□□ 1.8
SMAD6-203ENST00000558937 RUSC2Q8N2Y8 1516 aa26.24■■□□□ 1.79
SMAD6-203ENST00000558937 CUL7Q14999 1698 aa26.24■■□□□ 1.79
SMAD6-203ENST00000558937 TRHP20396 242 aaPredicted RBP26.23■■□□□ 1.79
SMAD6-203ENST00000558937 IGF1RP08069 1367 aa26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms