RNA–Protein interactions for RNA: ENST00000558855.5

VPS18-203, Transcript of VPS18, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS18, Length 1,050 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS18-203ENST00000558855 NISCHQ9Y2I1 1504 aa34.18■■■■□ 3.06
VPS18-203ENST00000558855 CCDC180Q9P1Z9 1646 aa30.65■■■□□ 2.5
VPS18-203ENST00000558855 ABCC9O60706 1549 aa30.49■■■□□ 2.47
VPS18-203ENST00000558855 RB1CC1Q8TDY2 1594 aa29.02■■■□□ 2.24
VPS18-203ENST00000558855 NACADO15069 1562 aa28.84■■■□□ 2.21
VPS18-203ENST00000558855 UNC13AQ9UPW8 1703 aa28.65■■■□□ 2.18
VPS18-203ENST00000558855 DCAF8L2P0C7V8 631 aa28.62■■■□□ 2.17
VPS18-203ENST00000558855 DNAJC5BQ9UF47 199 aa28.51■■■□□ 2.15
VPS18-203ENST00000558855 MYO15BQ96JP2 1530 aa28.48■■■□□ 2.15
VPS18-203ENST00000558855 ZCCHC6Q5VYS8 1495 aaKnown RBP28.4■■■□□ 2.14
VPS18-203ENST00000558855 PABPN1Q86U42 306 aaKnown RBP eCLIP28.35■■■□□ 2.13
VPS18-203ENST00000558855 BICRAQ9NZM4 1560 aa28.34■■■□□ 2.13
VPS18-203ENST00000558855 DCAF1Q9Y4B6 1507 aa28.19■■■□□ 2.1
VPS18-203ENST00000558855 SCRIBQ14160 1630 aa28■■■□□ 2.07
VPS18-203ENST00000558855 SHROOM4Q9ULL8 1493 aa27.74■■■□□ 2.03
VPS18-203ENST00000558855 CC2D2AQ9P2K1 1620 aa27.59■■■□□ 2.01
VPS18-203ENST00000558855 EIF4G1Q04637 1599 aaKnown RBP27.54■■■□□ 2
VPS18-203ENST00000558855 CECR2Q9BXF3 1484 aa27.39■■□□□ 1.98
VPS18-203ENST00000558855 SMARCA4P51532 1647 aa26.69■■□□□ 1.86
VPS18-203ENST00000558855 NCAPD3P42695 1498 aa26.62■■□□□ 1.85
VPS18-203ENST00000558855 ATAD2BQ9ULI0 1458 aa26.61■■□□□ 1.85
VPS18-203ENST00000558855 SMARCA2P51531 1590 aa26.5■■□□□ 1.83
VPS18-203ENST00000558855 HMGXB3Q12766 1538 aa26.49■■□□□ 1.83
VPS18-203ENST00000558855 BAZ1AQ9NRL2 1556 aaPredicted RBP26.48■■□□□ 1.83
VPS18-203ENST00000558855 MROH2BQ7Z745 1585 aa26.41■■□□□ 1.82
VPS18-203ENST00000558855 PEG3Q9GZU2 1588 aa26.39■■□□□ 1.82
VPS18-203ENST00000558855 BAZ1BQ9UIG0 1483 aaKnown RBP26.32■■□□□ 1.8
VPS18-203ENST00000558855 NESP48681 1621 aa26.3■■□□□ 1.8
VPS18-203ENST00000558855 ERCC6Q03468 1493 aa26.2■■□□□ 1.78
VPS18-203ENST00000558855 WIZO95785 1651 aa26.15■■□□□ 1.78
VPS18-203ENST00000558855 CUX2O14529 1486 aa26.11■■□□□ 1.77
VPS18-203ENST00000558855 THOC2Q8NI27 1593 aaKnown RBP26.03■■□□□ 1.76
VPS18-203ENST00000558855 LAMC3Q9Y6N6 1575 aa26.03■■□□□ 1.76
VPS18-203ENST00000558855 KIF21AQ7Z4S6 1674 aa26.03■■□□□ 1.76
VPS18-203ENST00000558855 DNAJC5Q9H3Z4 198 aa25.9■■□□□ 1.74
VPS18-203ENST00000558855 RSF1Q96T23 1441 aaPredicted RBP25.84■■□□□ 1.73
VPS18-203ENST00000558855 CADPSQ9ULU8 1353 aa25.78■■□□□ 1.72
VPS18-203ENST00000558855 PDS5BQ9NTI5 1447 aa25.76■■□□□ 1.71
VPS18-203ENST00000558855 TOP2AP11388 1531 aaKnown RBP25.73■■□□□ 1.71
VPS18-203ENST00000558855 MRC2Q9UBG0 1479 aa25.63■■□□□ 1.69
VPS18-203ENST00000558855 WDR62O43379 1518 aa25.62■■□□□ 1.69
VPS18-203ENST00000558855 CFTRP13569 1480 aa25.57■■□□□ 1.68
VPS18-203ENST00000558855 FANCD2Q9BXW9 1451 aa25.55■■□□□ 1.68
VPS18-203ENST00000558855 CEP164Q9UPV0 1460 aa25.55■■□□□ 1.68
VPS18-203ENST00000558855 PRDM2Q13029 1718 aa25.51■■□□□ 1.67
VPS18-203ENST00000558855 CCDC88BA6NC98 1476 aa25.43■■□□□ 1.66
VPS18-203ENST00000558855 URB2Q14146 1524 aaKnown RBP25.42■■□□□ 1.66
VPS18-203ENST00000558855 TOPBP1Q92547 1522 aa25.12■■□□□ 1.61
VPS18-203ENST00000558855 ZNF608Q9ULD9 1512 aaPredicted RBP25.08■■□□□ 1.61
VPS18-203ENST00000558855 DNMBPQ6XZF7 1577 aa25.05■■□□□ 1.6
VPS18-203ENST00000558855 IFT140Q96RY7 1462 aa25.01■■□□□ 1.59
VPS18-203ENST00000558855 EIF4G3O43432 1585 aaKnown RBP24.98■■□□□ 1.59
VPS18-203ENST00000558855 TARBP1Q13395 1621 aaKnown RBP24.96■■□□□ 1.59
VPS18-203ENST00000558855 ABCC8Q09428 1581 aa24.92■■□□□ 1.58
VPS18-203ENST00000558855 POLA1P09884 1462 aaPredicted RBP24.88■■□□□ 1.57
VPS18-203ENST00000558855 OSCARQ8IYS5 282 aa24.84■■□□□ 1.57
VPS18-203ENST00000558855 TRIM41Q8WV44 630 aa24.84■■□□□ 1.57
VPS18-203ENST00000558855 CHD1O14646 1710 aa24.83■■□□□ 1.57
VPS18-203ENST00000558855 AQRO60306 1485 aaKnown RBP eCLIP24.81■■□□□ 1.567e-6■□□□□ 9.8
VPS18-203ENST00000558855 RAD54L2Q9Y4B4 1467 aa24.81■■□□□ 1.56
VPS18-203ENST00000558855 CUX1P39880 1505 aa24.8■■□□□ 1.56
VPS18-203ENST00000558855 RIMBP3CA6NJZ7 1639 aa24.76■■□□□ 1.55
VPS18-203ENST00000558855 RIMBP3BA6NNM3 1639 aa24.76■■□□□ 1.55
VPS18-203ENST00000558855 RIMBP3Q9UFD9 1639 aa24.76■■□□□ 1.55
VPS18-203ENST00000558855 FGD5Q6ZNL6 1462 aa24.75■■□□□ 1.55
VPS18-203ENST00000558855 SUPT5HO00267 1087 aaKnown RBP24.72■■□□□ 1.55
VPS18-203ENST00000558855 WDR97A6NE52 1622 aa24.71■■□□□ 1.55
VPS18-203ENST00000558855 SOGA1O94964 1423 aa24.68■■□□□ 1.54
VPS18-203ENST00000558855 TDRD9Q8NDG6 1382 aaKnown RBP24.66■■□□□ 1.54
VPS18-203ENST00000558855 ARHGEF11O15085 1522 aa24.63■■□□□ 1.53
VPS18-203ENST00000558855 SNAPC4Q5SXM2 1469 aa24.58■■□□□ 1.53
VPS18-203ENST00000558855 PBRM1Q86U86 1689 aa24.56■■□□□ 1.52
VPS18-203ENST00000558855 ABCA5Q8WWZ7 1642 aa24.5■■□□□ 1.51
VPS18-203ENST00000558855 FBLN2P98095 1184 aa24.48■■□□□ 1.51
VPS18-203ENST00000558855 CLASP1Q7Z460 1538 aa24.47■■□□□ 1.51
VPS18-203ENST00000558855 BIVM-ERCC5R4GMW8 1640 aa24.46■■□□□ 1.51
VPS18-203ENST00000558855 SYNJ1O43426 1573 aa24.46■■□□□ 1.51
VPS18-203ENST00000558855 GRIN2BQ13224 1484 aa24.45■■□□□ 1.51
VPS18-203ENST00000558855 MAGI1Q96QZ7 1491 aaPredicted RBP24.45■■□□□ 1.5
VPS18-203ENST00000558855 ABCA10Q8WWZ4 1543 aa24.44■■□□□ 1.5
VPS18-203ENST00000558855 ARAP1Q96P48 1450 aa24.44■■□□□ 1.5
VPS18-203ENST00000558855 TOP2BQ02880 1626 aa24.41■■□□□ 1.5
VPS18-203ENST00000558855 GAPVD1Q14C86 1478 aa24.4■■□□□ 1.5
VPS18-203ENST00000558855 SYNJ2O15056 1496 aa24.38■■□□□ 1.49
VPS18-203ENST00000558855 WRNQ14191 1432 aaPredicted RBP eCLIP24.33■■□□□ 1.49
VPS18-203ENST00000558855 CYB5RLQ6IPT4 315 aa24.31■■□□□ 1.48
VPS18-203ENST00000558855 CHMP7Q8WUX9 453 aaPredicted RBP24.3■■□□□ 1.48
VPS18-203ENST00000558855 ADAMTS12P58397 1594 aa24.29■■□□□ 1.48
VPS18-203ENST00000558855 CEP170Q5SW79 1584 aa24.2■■□□□ 1.47
VPS18-203ENST00000558855 GRIN2AQ12879 1464 aa24.19■■□□□ 1.46
VPS18-203ENST00000558855 ERCC6L2Q5T890 1561 aa24.19■■□□□ 1.46
VPS18-203ENST00000558855 ERICH3Q5RHP9 1530 aa24.11■■□□□ 1.45
VPS18-203ENST00000558855 NUP160Q12769 1436 aa24.1■■□□□ 1.45
VPS18-203ENST00000558855 FHAD1B1AJZ9 1412 aa24.08■■□□□ 1.44
VPS18-203ENST00000558855 SHROOM2Q13796 1616 aa24.07■■□□□ 1.44
VPS18-203ENST00000558855 RUSC2Q8N2Y8 1516 aa23.95■■□□□ 1.43
VPS18-203ENST00000558855 TRHP20396 242 aaPredicted RBP23.95■■□□□ 1.42
VPS18-203ENST00000558855 CUL7Q14999 1698 aa23.84■■□□□ 1.41
VPS18-203ENST00000558855 IGF1RP08069 1367 aa23.82■■□□□ 1.4
VPS18-203ENST00000558855 PRG4Q92954 1404 aaPredicted RBP23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms