RNA–Protein interactions for RNA: ENST00000558806.5

AP3S2-206, Transcript of adaptor related protein complex 3 subunit sigma 2, humanhuman

TSL 1 (best)

Gene AP3S2, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2-206ENST00000558806 NISCHQ9Y2I1 1504 aa26.9■■□□□ 1.9
AP3S2-206ENST00000558806 ABCC9O60706 1549 aa24.19■■□□□ 1.46
AP3S2-206ENST00000558806 CCDC180Q9P1Z9 1646 aa24.17■■□□□ 1.46
AP3S2-206ENST00000558806 RB1CC1Q8TDY2 1594 aa23.04■■□□□ 1.28
AP3S2-206ENST00000558806 NACADO15069 1562 aa22.87■■□□□ 1.25
AP3S2-206ENST00000558806 DCAF8L2P0C7V8 631 aa22.7■■□□□ 1.22
AP3S2-206ENST00000558806 DNAJC5BQ9UF47 199 aa22.69■■□□□ 1.22
AP3S2-206ENST00000558806 MYO15BQ96JP2 1530 aa22.57■■□□□ 1.2
AP3S2-206ENST00000558806 PABPN1Q86U42 306 aaKnown RBP eCLIP22.49■■□□□ 1.19
AP3S2-206ENST00000558806 UNC13AQ9UPW8 1703 aa22.46■■□□□ 1.19
AP3S2-206ENST00000558806 BICRAQ9NZM4 1560 aa22.33■■□□□ 1.17
AP3S2-206ENST00000558806 ZCCHC6Q5VYS8 1495 aaKnown RBP22.29■■□□□ 1.16
AP3S2-206ENST00000558806 DCAF1Q9Y4B6 1507 aa22.25■■□□□ 1.15
AP3S2-206ENST00000558806 SHROOM4Q9ULL8 1493 aa22.1■■□□□ 1.13
AP3S2-206ENST00000558806 SCRIBQ14160 1630 aa21.99■■□□□ 1.11
AP3S2-206ENST00000558806 CC2D2AQ9P2K1 1620 aa21.85■■□□□ 1.09
AP3S2-206ENST00000558806 CECR2Q9BXF3 1484 aa21.81■■□□□ 1.08
AP3S2-206ENST00000558806 EIF4G1Q04637 1599 aaKnown RBP21.81■■□□□ 1.08
AP3S2-206ENST00000558806 NCAPD3P42695 1498 aa21.11■□□□□ 0.97
AP3S2-206ENST00000558806 ATAD2BQ9ULI0 1458 aa21.02■□□□□ 0.96
AP3S2-206ENST00000558806 SMARCA2P51531 1590 aa20.99■□□□□ 0.95
AP3S2-206ENST00000558806 SMARCA4P51532 1647 aa20.99■□□□□ 0.95
AP3S2-206ENST00000558806 HMGXB3Q12766 1538 aa20.96■□□□□ 0.95
AP3S2-206ENST00000558806 DNAJC5Q9H3Z4 198 aa20.92■□□□□ 0.94
AP3S2-206ENST00000558806 ERCC6Q03468 1493 aa20.92■□□□□ 0.94
AP3S2-206ENST00000558806 CUX2O14529 1486 aa20.91■□□□□ 0.94
AP3S2-206ENST00000558806 BAZ1AQ9NRL2 1556 aaPredicted RBP20.9■□□□□ 0.94
AP3S2-206ENST00000558806 BAZ1BQ9UIG0 1483 aaKnown RBP20.83■□□□□ 0.93
AP3S2-206ENST00000558806 PEG3Q9GZU2 1588 aa20.81■□□□□ 0.92
AP3S2-206ENST00000558806 NESP48681 1621 aa20.75■□□□□ 0.91
AP3S2-206ENST00000558806 MROH2BQ7Z745 1585 aa20.71■□□□□ 0.91
AP3S2-206ENST00000558806 LAMC3Q9Y6N6 1575 aa20.65■□□□□ 0.9
AP3S2-206ENST00000558806 THOC2Q8NI27 1593 aaKnown RBP20.57■□□□□ 0.88
AP3S2-206ENST00000558806 PDS5BQ9NTI5 1447 aa20.54■□□□□ 0.88
AP3S2-206ENST00000558806 KIF21AQ7Z4S6 1674 aa20.49■□□□□ 0.87
AP3S2-206ENST00000558806 CADPSQ9ULU8 1353 aa20.46■□□□□ 0.87
AP3S2-206ENST00000558806 WIZO95785 1651 aa20.45■□□□□ 0.86
AP3S2-206ENST00000558806 MRC2Q9UBG0 1479 aa20.35■□□□□ 0.85
AP3S2-206ENST00000558806 WDR62O43379 1518 aa20.3■□□□□ 0.84
AP3S2-206ENST00000558806 RSF1Q96T23 1441 aaPredicted RBP20.27■□□□□ 0.84
AP3S2-206ENST00000558806 CEP164Q9UPV0 1460 aa20.26■□□□□ 0.83
AP3S2-206ENST00000558806 CFTRP13569 1480 aa20.23■□□□□ 0.83
AP3S2-206ENST00000558806 FANCD2Q9BXW9 1451 aa20.23■□□□□ 0.83
AP3S2-206ENST00000558806 TOP2AP11388 1531 aaKnown RBP20.22■□□□□ 0.83
AP3S2-206ENST00000558806 URB2Q14146 1524 aaKnown RBP20.04■□□□□ 0.8
AP3S2-206ENST00000558806 PRDM2Q13029 1718 aa20■□□□□ 0.79
AP3S2-206ENST00000558806 CCDC88BA6NC98 1476 aa19.98■□□□□ 0.79
AP3S2-206ENST00000558806 TRIM41Q8WV44 630 aa19.97■□□□□ 0.79
AP3S2-206ENST00000558806 OSCARQ8IYS5 282 aa19.93■□□□□ 0.78
AP3S2-206ENST00000558806 IFT140Q96RY7 1462 aa19.86■□□□□ 0.77
AP3S2-206ENST00000558806 TOPBP1Q92547 1522 aa19.83■□□□□ 0.77
AP3S2-206ENST00000558806 ABCC8Q09428 1581 aa19.83■□□□□ 0.76
AP3S2-206ENST00000558806 ZNF608Q9ULD9 1512 aaPredicted RBP19.8■□□□□ 0.76
AP3S2-206ENST00000558806 DNMBPQ6XZF7 1577 aa19.77■□□□□ 0.76
AP3S2-206ENST00000558806 EIF4G3O43432 1585 aaKnown RBP19.71■□□□□ 0.75
AP3S2-206ENST00000558806 RIMBP3CA6NJZ7 1639 aa19.65■□□□□ 0.74
AP3S2-206ENST00000558806 RIMBP3BA6NNM3 1639 aa19.65■□□□□ 0.74
AP3S2-206ENST00000558806 TARBP1Q13395 1621 aaKnown RBP19.65■□□□□ 0.74
AP3S2-206ENST00000558806 RIMBP3Q9UFD9 1639 aa19.65■□□□□ 0.74
AP3S2-206ENST00000558806 POLA1P09884 1462 aaPredicted RBP19.63■□□□□ 0.73
AP3S2-206ENST00000558806 AQRO60306 1485 aaKnown RBP eCLIP19.61■□□□□ 0.73
AP3S2-206ENST00000558806 ARHGEF11O15085 1522 aa19.61■□□□□ 0.73
AP3S2-206ENST00000558806 CHD1O14646 1710 aa19.54■□□□□ 0.72
AP3S2-206ENST00000558806 SOGA1O94964 1423 aa19.54■□□□□ 0.72
AP3S2-206ENST00000558806 RAD54L2Q9Y4B4 1467 aa19.54■□□□□ 0.72
AP3S2-206ENST00000558806 WDR97A6NE52 1622 aa19.51■□□□□ 0.71
AP3S2-206ENST00000558806 FBLN2P98095 1184 aa19.5■□□□□ 0.71
AP3S2-206ENST00000558806 FGD5Q6ZNL6 1462 aa19.49■□□□□ 0.71
AP3S2-206ENST00000558806 TDRD9Q8NDG6 1382 aaKnown RBP19.49■□□□□ 0.71
AP3S2-206ENST00000558806 CUX1P39880 1505 aa19.46■□□□□ 0.71
AP3S2-206ENST00000558806 CYB5RLQ6IPT4 315 aa19.45■□□□□ 0.7
AP3S2-206ENST00000558806 SNAPC4Q5SXM2 1469 aa19.43■□□□□ 0.7
AP3S2-206ENST00000558806 MAGI1Q96QZ7 1491 aaPredicted RBP19.41■□□□□ 0.7
AP3S2-206ENST00000558806 ARAP1Q96P48 1450 aa19.4■□□□□ 0.7
AP3S2-206ENST00000558806 GRIN2BQ13224 1484 aa19.39■□□□□ 0.69
AP3S2-206ENST00000558806 CHMP7Q8WUX9 453 aaPredicted RBP19.37■□□□□ 0.69
AP3S2-206ENST00000558806 SYNJ1O43426 1573 aa19.35■□□□□ 0.69
AP3S2-206ENST00000558806 CLASP1Q7Z460 1538 aa19.35■□□□□ 0.69
AP3S2-206ENST00000558806 SYNJ2O15056 1496 aa19.34■□□□□ 0.69
AP3S2-206ENST00000558806 SUPT5HO00267 1087 aaKnown RBP19.32■□□□□ 0.68
AP3S2-206ENST00000558806 GAPVD1Q14C86 1478 aa19.31■□□□□ 0.68
AP3S2-206ENST00000558806 PBRM1Q86U86 1689 aa19.29■□□□□ 0.68
AP3S2-206ENST00000558806 ABCA10Q8WWZ4 1543 aa19.29■□□□□ 0.68
AP3S2-206ENST00000558806 TRHP20396 242 aaPredicted RBP19.26■□□□□ 0.67
AP3S2-206ENST00000558806 ABCA5Q8WWZ7 1642 aa19.25■□□□□ 0.67
AP3S2-206ENST00000558806 WRNQ14191 1432 aaPredicted RBP eCLIP19.21■□□□□ 0.67
AP3S2-206ENST00000558806 TOP2BQ02880 1626 aa19.16■□□□□ 0.66
AP3S2-206ENST00000558806 BIVM-ERCC5R4GMW8 1640 aa19.15■□□□□ 0.66
AP3S2-206ENST00000558806 GRIN2AQ12879 1464 aa19.14■□□□□ 0.65
AP3S2-206ENST00000558806 ADAMTS12P58397 1594 aa19.1■□□□□ 0.65
AP3S2-206ENST00000558806 NUP160Q12769 1436 aa19.08■□□□□ 0.64
AP3S2-206ENST00000558806 FHAD1B1AJZ9 1412 aa19.07■□□□□ 0.64
AP3S2-206ENST00000558806 ERICH3Q5RHP9 1530 aa19.05■□□□□ 0.64
AP3S2-206ENST00000558806 CEP170Q5SW79 1584 aa19.05■□□□□ 0.64
AP3S2-206ENST00000558806 ERCC6L2Q5T890 1561 aa19.01■□□□□ 0.63
AP3S2-206ENST00000558806 SHROOM2Q13796 1616 aa18.99■□□□□ 0.63
AP3S2-206ENST00000558806 PRG4Q92954 1404 aaPredicted RBP18.89■□□□□ 0.61
AP3S2-206ENST00000558806 JPH4Q96JJ6 628 aa18.87■□□□□ 0.61
AP3S2-206ENST00000558806 RUSC2Q8N2Y8 1516 aa18.84■□□□□ 0.61
AP3S2-206ENST00000558806 KIF27Q86VH2 1401 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms