RNA–Protein interactions for RNA: ENST00000558796.2

PBX1-213, Transcript of PBX homeobox 1, humanhuman

TSL 5

Gene PBX1, Length 366 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX1-213ENST00000558796 NISCHQ9Y2I1 1504 aa27.02■■□□□ 1.92
PBX1-213ENST00000558796 CCDC180Q9P1Z9 1646 aa24.16■■□□□ 1.46
PBX1-213ENST00000558796 ABCC9O60706 1549 aa23.65■■□□□ 1.38
PBX1-213ENST00000558796 RB1CC1Q8TDY2 1594 aa22.72■■□□□ 1.23
PBX1-213ENST00000558796 NACADO15069 1562 aa22.64■■□□□ 1.22
PBX1-213ENST00000558796 DCAF8L2P0C7V8 631 aa22.55■■□□□ 1.2
PBX1-213ENST00000558796 ZCCHC6Q5VYS8 1495 aaKnown RBP22.51■■□□□ 1.19
PBX1-213ENST00000558796 MYO15BQ96JP2 1530 aa22.43■■□□□ 1.18
PBX1-213ENST00000558796 UNC13AQ9UPW8 1703 aa22.38■■□□□ 1.17
PBX1-213ENST00000558796 DCAF1Q9Y4B6 1507 aa22.32■■□□□ 1.16
PBX1-213ENST00000558796 BICRAQ9NZM4 1560 aa22.06■■□□□ 1.12
PBX1-213ENST00000558796 SCRIBQ14160 1630 aa22.05■■□□□ 1.12
PBX1-213ENST00000558796 PABPN1Q86U42 306 aaKnown RBP eCLIP22.02■■□□□ 1.12
PBX1-213ENST00000558796 SHROOM4Q9ULL8 1493 aa21.74■■□□□ 1.07
PBX1-213ENST00000558796 DNAJC5BQ9UF47 199 aa21.7■■□□□ 1.06
PBX1-213ENST00000558796 EIF4G1Q04637 1599 aaKnown RBP21.48■■□□□ 1.03
PBX1-213ENST00000558796 CC2D2AQ9P2K1 1620 aa21.43■■□□□ 1.02
PBX1-213ENST00000558796 CECR2Q9BXF3 1484 aa21.24■□□□□ 0.99
PBX1-213ENST00000558796 SMARCA4P51532 1647 aa21.05■□□□□ 0.96
PBX1-213ENST00000558796 BAZ1AQ9NRL2 1556 aaPredicted RBP20.96■□□□□ 0.95
PBX1-213ENST00000558796 SMARCA2P51531 1590 aa20.88■□□□□ 0.93
PBX1-213ENST00000558796 ATAD2BQ9ULI0 1458 aa20.88■□□□□ 0.93
PBX1-213ENST00000558796 MROH2BQ7Z745 1585 aa20.85■□□□□ 0.93
PBX1-213ENST00000558796 NCAPD3P42695 1498 aa20.83■□□□□ 0.93
PBX1-213ENST00000558796 HMGXB3Q12766 1538 aa20.81■□□□□ 0.92
PBX1-213ENST00000558796 PEG3Q9GZU2 1588 aa20.8■□□□□ 0.92
PBX1-213ENST00000558796 BAZ1BQ9UIG0 1483 aaKnown RBP20.73■□□□□ 0.91
PBX1-213ENST00000558796 WIZO95785 1651 aa20.68■□□□□ 0.9
PBX1-213ENST00000558796 RSF1Q96T23 1441 aaPredicted RBP20.52■□□□□ 0.87
PBX1-213ENST00000558796 NESP48681 1621 aa20.45■□□□□ 0.87
PBX1-213ENST00000558796 TOP2AP11388 1531 aaKnown RBP20.41■□□□□ 0.86
PBX1-213ENST00000558796 ERCC6Q03468 1493 aa20.39■□□□□ 0.85
PBX1-213ENST00000558796 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
PBX1-213ENST00000558796 KIF21AQ7Z4S6 1674 aa20.32■□□□□ 0.84
PBX1-213ENST00000558796 THOC2Q8NI27 1593 aaKnown RBP20.22■□□□□ 0.83
PBX1-213ENST00000558796 CADPSQ9ULU8 1353 aa20.21■□□□□ 0.83
PBX1-213ENST00000558796 PRDM2Q13029 1718 aa20.18■□□□□ 0.82
PBX1-213ENST00000558796 CUX2O14529 1486 aa20.18■□□□□ 0.82
PBX1-213ENST00000558796 PDS5BQ9NTI5 1447 aa20.17■□□□□ 0.82
PBX1-213ENST00000558796 CCDC88BA6NC98 1476 aa20.12■□□□□ 0.81
PBX1-213ENST00000558796 CFTRP13569 1480 aa20.11■□□□□ 0.81
PBX1-213ENST00000558796 FANCD2Q9BXW9 1451 aa20.05■□□□□ 0.8
PBX1-213ENST00000558796 CEP164Q9UPV0 1460 aa20.05■□□□□ 0.8
PBX1-213ENST00000558796 MRC2Q9UBG0 1479 aa20.03■□□□□ 0.8
PBX1-213ENST00000558796 WDR62O43379 1518 aa19.99■□□□□ 0.79
PBX1-213ENST00000558796 SUPT5HO00267 1087 aaKnown RBP19.93■□□□□ 0.78
PBX1-213ENST00000558796 URB2Q14146 1524 aaKnown RBP19.88■□□□□ 0.77
PBX1-213ENST00000558796 TOPBP1Q92547 1522 aa19.73■□□□□ 0.75
PBX1-213ENST00000558796 DNMBPQ6XZF7 1577 aa19.73■□□□□ 0.75
PBX1-213ENST00000558796 ABCC8Q09428 1581 aa19.66■□□□□ 0.74
PBX1-213ENST00000558796 IFT140Q96RY7 1462 aa19.6■□□□□ 0.73
PBX1-213ENST00000558796 CUX1P39880 1505 aa19.57■□□□□ 0.72
PBX1-213ENST00000558796 TARBP1Q13395 1621 aaKnown RBP19.57■□□□□ 0.72
PBX1-213ENST00000558796 DNAJC5Q9H3Z4 198 aa19.56■□□□□ 0.72
PBX1-213ENST00000558796 ZNF608Q9ULD9 1512 aaPredicted RBP19.56■□□□□ 0.72
PBX1-213ENST00000558796 POLA1P09884 1462 aaPredicted RBP19.55■□□□□ 0.72
PBX1-213ENST00000558796 EIF4G3O43432 1585 aaKnown RBP19.55■□□□□ 0.72
PBX1-213ENST00000558796 FGD5Q6ZNL6 1462 aa19.51■□□□□ 0.71
PBX1-213ENST00000558796 RAD54L2Q9Y4B4 1467 aa19.48■□□□□ 0.71
PBX1-213ENST00000558796 WDR97A6NE52 1622 aa19.46■□□□□ 0.71
PBX1-213ENST00000558796 BIVM-ERCC5R4GMW8 1640 aa19.43■□□□□ 0.7
PBX1-213ENST00000558796 SOGA1O94964 1423 aa19.42■□□□□ 0.7
PBX1-213ENST00000558796 SYNJ1O43426 1573 aa19.41■□□□□ 0.7
PBX1-213ENST00000558796 AQRO60306 1485 aaKnown RBP eCLIP19.41■□□□□ 0.7
PBX1-213ENST00000558796 TOP2BQ02880 1626 aa19.4■□□□□ 0.7
PBX1-213ENST00000558796 CHD1O14646 1710 aa19.39■□□□□ 0.69
PBX1-213ENST00000558796 WRNQ14191 1432 aaPredicted RBP eCLIP19.36■□□□□ 0.69
PBX1-213ENST00000558796 PBRM1Q86U86 1689 aa19.36■□□□□ 0.69
PBX1-213ENST00000558796 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
PBX1-213ENST00000558796 ABCA5Q8WWZ7 1642 aa19.3■□□□□ 0.68
PBX1-213ENST00000558796 ABCA10Q8WWZ4 1543 aa19.29■□□□□ 0.68
PBX1-213ENST00000558796 SNAPC4Q5SXM2 1469 aa19.27■□□□□ 0.67
PBX1-213ENST00000558796 GRIN2BQ13224 1484 aa19.23■□□□□ 0.67
PBX1-213ENST00000558796 OSCARQ8IYS5 282 aa19.23■□□□□ 0.67
PBX1-213ENST00000558796 GAPVD1Q14C86 1478 aa19.22■□□□□ 0.67
PBX1-213ENST00000558796 MAGI1Q96QZ7 1491 aaPredicted RBP19.2■□□□□ 0.66
PBX1-213ENST00000558796 FBLN2P98095 1184 aa19.16■□□□□ 0.66
PBX1-213ENST00000558796 RIMBP3CA6NJZ7 1639 aa19.12■□□□□ 0.65
PBX1-213ENST00000558796 RIMBP3BA6NNM3 1639 aa19.12■□□□□ 0.65
PBX1-213ENST00000558796 RIMBP3Q9UFD9 1639 aa19.12■□□□□ 0.65
PBX1-213ENST00000558796 ADAMTS12P58397 1594 aa19.12■□□□□ 0.65
PBX1-213ENST00000558796 SYNJ2O15056 1496 aa19.12■□□□□ 0.65
PBX1-213ENST00000558796 ERICH3Q5RHP9 1530 aa19.07■□□□□ 0.64
PBX1-213ENST00000558796 CLASP1Q7Z460 1538 aa19.06■□□□□ 0.64
PBX1-213ENST00000558796 CHMP7Q8WUX9 453 aaPredicted RBP19.06■□□□□ 0.64
PBX1-213ENST00000558796 ARHGEF11O15085 1522 aa19.05■□□□□ 0.64
PBX1-213ENST00000558796 GRIN2AQ12879 1464 aa19.01■□□□□ 0.63
PBX1-213ENST00000558796 FHAD1B1AJZ9 1412 aa18.98■□□□□ 0.63
PBX1-213ENST00000558796 CEP170Q5SW79 1584 aa18.98■□□□□ 0.63
PBX1-213ENST00000558796 TRIM41Q8WV44 630 aa18.97■□□□□ 0.63
PBX1-213ENST00000558796 CUL7Q14999 1698 aa18.95■□□□□ 0.62
PBX1-213ENST00000558796 KIF27Q86VH2 1401 aa18.94■□□□□ 0.62
PBX1-213ENST00000558796 NUP160Q12769 1436 aa18.9■□□□□ 0.62
PBX1-213ENST00000558796 ARAP1Q96P48 1450 aa18.89■□□□□ 0.61
PBX1-213ENST00000558796 RUSC2Q8N2Y8 1516 aa18.85■□□□□ 0.61
PBX1-213ENST00000558796 SHROOM2Q13796 1616 aa18.85■□□□□ 0.61
PBX1-213ENST00000558796 IGF1RP08069 1367 aa18.84■□□□□ 0.61
PBX1-213ENST00000558796 ERCC6L2Q5T890 1561 aa18.82■□□□□ 0.6
PBX1-213ENST00000558796 CYB5RLQ6IPT4 315 aa18.79■□□□□ 0.6
PBX1-213ENST00000558796 CARMIL1Q5VZK9 1371 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms