RNA–Protein interactions for RNA: ENST00000558763.1

SMAD3-207, Transcript of SMAD family member 3, humanhuman

TSL 2

Gene SMAD3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-207ENST00000558763 NISCHQ9Y2I1 1504 aa29.55■■■□□ 2.32
SMAD3-207ENST00000558763 CCDC180Q9P1Z9 1646 aa26.01■■□□□ 1.75
SMAD3-207ENST00000558763 ABCC9O60706 1549 aa25.02■■□□□ 1.6
SMAD3-207ENST00000558763 ZCCHC6Q5VYS8 1495 aaKnown RBP24.74■■□□□ 1.55
SMAD3-207ENST00000558763 DCAF8L2P0C7V8 631 aa24.57■■□□□ 1.52
SMAD3-207ENST00000558763 DCAF1Q9Y4B6 1507 aa24.41■■□□□ 1.5
SMAD3-207ENST00000558763 NACADO15069 1562 aa24.31■■□□□ 1.48
SMAD3-207ENST00000558763 MYO15BQ96JP2 1530 aa24.28■■□□□ 1.48
SMAD3-207ENST00000558763 RB1CC1Q8TDY2 1594 aa24.23■■□□□ 1.47
SMAD3-207ENST00000558763 SHROOM4Q9ULL8 1493 aa23.88■■□□□ 1.41
SMAD3-207ENST00000558763 SCRIBQ14160 1630 aa23.88■■□□□ 1.41
SMAD3-207ENST00000558763 UNC13AQ9UPW8 1703 aa23.75■■□□□ 1.39
SMAD3-207ENST00000558763 BICRAQ9NZM4 1560 aa23.5■■□□□ 1.35
SMAD3-207ENST00000558763 PABPN1Q86U42 306 aaKnown RBP eCLIP23.48■■□□□ 1.35
SMAD3-207ENST00000558763 CECR2Q9BXF3 1484 aa23.01■■□□□ 1.27
SMAD3-207ENST00000558763 SUPT5HO00267 1087 aaKnown RBP23■■□□□ 1.27
SMAD3-207ENST00000558763 BAZ1AQ9NRL2 1556 aaPredicted RBP22.86■■□□□ 1.25
SMAD3-207ENST00000558763 EIF4G1Q04637 1599 aaKnown RBP22.85■■□□□ 1.25
SMAD3-207ENST00000558763 SMARCA4P51532 1647 aa22.83■■□□□ 1.25
SMAD3-207ENST00000558763 MROH2BQ7Z745 1585 aa22.82■■□□□ 1.24
SMAD3-207ENST00000558763 RSF1Q96T23 1441 aaPredicted RBP22.73■■□□□ 1.23
SMAD3-207ENST00000558763 WIZO95785 1651 aa22.63■■□□□ 1.21
SMAD3-207ENST00000558763 CC2D2AQ9P2K1 1620 aa22.63■■□□□ 1.21
SMAD3-207ENST00000558763 PEG3Q9GZU2 1588 aa22.55■■□□□ 1.2
SMAD3-207ENST00000558763 ATAD2BQ9ULI0 1458 aa22.55■■□□□ 1.2
SMAD3-207ENST00000558763 SMARCA2P51531 1590 aa22.53■■□□□ 1.2
SMAD3-207ENST00000558763 DNAJC5BQ9UF47 199 aa22.45■■□□□ 1.18
SMAD3-207ENST00000558763 BAZ1BQ9UIG0 1483 aaKnown RBP22.42■■□□□ 1.18
SMAD3-207ENST00000558763 NCAPD3P42695 1498 aa22.42■■□□□ 1.18
SMAD3-207ENST00000558763 HMGXB3Q12766 1538 aa22.38■■□□□ 1.17
SMAD3-207ENST00000558763 TOP2AP11388 1531 aaKnown RBP22.37■■□□□ 1.17
SMAD3-207ENST00000558763 CHIC1Q5VXU3 224 aa22.18■■□□□ 1.14
SMAD3-207ENST00000558763 CCDC88BA6NC98 1476 aa22.11■■□□□ 1.13
SMAD3-207ENST00000558763 CADPSQ9ULU8 1353 aa21.82■■□□□ 1.08
SMAD3-207ENST00000558763 NESP48681 1621 aa21.82■■□□□ 1.08
SMAD3-207ENST00000558763 CFTRP13569 1480 aa21.81■■□□□ 1.08
SMAD3-207ENST00000558763 LAMC3Q9Y6N6 1575 aa21.77■■□□□ 1.08
SMAD3-207ENST00000558763 PRDM2Q13029 1718 aa21.71■■□□□ 1.07
SMAD3-207ENST00000558763 FANCD2Q9BXW9 1451 aa21.6■■□□□ 1.05
SMAD3-207ENST00000558763 PDS5BQ9NTI5 1447 aa21.59■■□□□ 1.05
SMAD3-207ENST00000558763 TRIM41Q8WV44 630 aa21.59■■□□□ 1.05
SMAD3-207ENST00000558763 KIF21AQ7Z4S6 1674 aa21.58■■□□□ 1.04
SMAD3-207ENST00000558763 ABCC8Q09428 1581 aa21.56■■□□□ 1.04
SMAD3-207ENST00000558763 CEP164Q9UPV0 1460 aa21.53■■□□□ 1.04
SMAD3-207ENST00000558763 ERCC6Q03468 1493 aa21.51■■□□□ 1.03
SMAD3-207ENST00000558763 WRNQ14191 1432 aaPredicted RBP eCLIP21.43■■□□□ 1.02
SMAD3-207ENST00000558763 SYNJ1O43426 1573 aa21.39■■□□□ 1.01
SMAD3-207ENST00000558763 CUX1P39880 1505 aa21.37■■□□□ 1.01
SMAD3-207ENST00000558763 URB2Q14146 1524 aaKnown RBP21.36■■□□□ 1.01
SMAD3-207ENST00000558763 MRC2Q9UBG0 1479 aa21.36■■□□□ 1.01
SMAD3-207ENST00000558763 THOC2Q8NI27 1593 aaKnown RBP21.33■■□□□ 1.01
SMAD3-207ENST00000558763 DNMBPQ6XZF7 1577 aa21.33■■□□□ 1
SMAD3-207ENST00000558763 LOC105371045A0A1W2PR82 267 aa21.32■■□□□ 1
SMAD3-207ENST00000558763 TOP2BQ02880 1626 aa21.32■■□□□ 1
SMAD3-207ENST00000558763 TOPBP1Q92547 1522 aa21.31■■□□□ 1
SMAD3-207ENST00000558763 BIVM-ERCC5R4GMW8 1640 aa21.31■■□□□ 1
SMAD3-207ENST00000558763 WDR62O43379 1518 aa21.28■■□□□ 1
SMAD3-207ENST00000558763 FGD5Q6ZNL6 1462 aa21.22■□□□□ 0.99
SMAD3-207ENST00000558763 FAM9AQ8IZU1 332 aaPredicted RBP21.22■□□□□ 0.99
SMAD3-207ENST00000558763 POLA1P09884 1462 aaPredicted RBP21.18■□□□□ 0.98
SMAD3-207ENST00000558763 SOGA1O94964 1423 aa21.17■□□□□ 0.98
SMAD3-207ENST00000558763 RAD54L2Q9Y4B4 1467 aa21.11■□□□□ 0.97
SMAD3-207ENST00000558763 RUSC2Q8N2Y8 1516 aa21.11■□□□□ 0.97
SMAD3-207ENST00000558763 CUX2O14529 1486 aa21.09■□□□□ 0.97
SMAD3-207ENST00000558763 EEA1Q15075 1411 aa21.08■□□□□ 0.96
SMAD3-207ENST00000558763 TARBP1Q13395 1621 aaKnown RBP21.04■□□□□ 0.96
SMAD3-207ENST00000558763 IFT140Q96RY7 1462 aa21.02■□□□□ 0.95
SMAD3-207ENST00000558763 WDR97A6NE52 1622 aa21.01■□□□□ 0.95
SMAD3-207ENST00000558763 ABCA10Q8WWZ4 1543 aa21■□□□□ 0.95
SMAD3-207ENST00000558763 ZNF608Q9ULD9 1512 aaPredicted RBP20.94■□□□□ 0.94
SMAD3-207ENST00000558763 TDRD9Q8NDG6 1382 aaKnown RBP20.94■□□□□ 0.94
SMAD3-207ENST00000558763 CSRNP3Q8WYN3 585 aa20.92■□□□□ 0.94
SMAD3-207ENST00000558763 KIF27Q86VH2 1401 aa20.92■□□□□ 0.94
SMAD3-207ENST00000558763 EHMT2Q96KQ7 1210 aa20.9■□□□□ 0.94
SMAD3-207ENST00000558763 ABCA5Q8WWZ7 1642 aa20.89■□□□□ 0.94
SMAD3-207ENST00000558763 EIF4G3O43432 1585 aaKnown RBP20.89■□□□□ 0.93
SMAD3-207ENST00000558763 AQRO60306 1485 aaKnown RBP eCLIP20.89■□□□□ 0.931e-7■■■■■ 32.3
SMAD3-207ENST00000558763 KIF21BO75037 1637 aa20.88■□□□□ 0.93
SMAD3-207ENST00000558763 GAPVD1Q14C86 1478 aa20.86■□□□□ 0.93
SMAD3-207ENST00000558763 GOLGA3Q08378 1498 aa20.83■□□□□ 0.92
SMAD3-207ENST00000558763 PBRM1Q86U86 1689 aa20.82■□□□□ 0.92
SMAD3-207ENST00000558763 TNIKQ9UKE5 1360 aa20.79■□□□□ 0.92
SMAD3-207ENST00000558763 GRIN2BQ13224 1484 aa20.76■□□□□ 0.91
SMAD3-207ENST00000558763 IGF1RP08069 1367 aa20.75■□□□□ 0.91
SMAD3-207ENST00000558763 ERICH3Q5RHP9 1530 aa20.75■□□□□ 0.91
SMAD3-207ENST00000558763 PRXQ9BXM0 1461 aa20.73■□□□□ 0.91
SMAD3-207ENST00000558763 RAPGEF2Q9Y4G8 1499 aa20.73■□□□□ 0.91
SMAD3-207ENST00000558763 CEP162Q5TB80 1403 aa20.72■□□□□ 0.91
SMAD3-207ENST00000558763 SNAPC4Q5SXM2 1469 aa20.71■□□□□ 0.91
SMAD3-207ENST00000558763 CUL7Q14999 1698 aa20.69■□□□□ 0.9
SMAD3-207ENST00000558763 ADAMTS12P58397 1594 aa20.66■□□□□ 0.9
SMAD3-207ENST00000558763 CARMIL1Q5VZK9 1371 aa20.65■□□□□ 0.9
SMAD3-207ENST00000558763 MAGI1Q96QZ7 1491 aaPredicted RBP20.64■□□□□ 0.89
SMAD3-207ENST00000558763 UBTFP17480 764 aaKnown RBP20.62■□□□□ 0.89
SMAD3-207ENST00000558763 FHAD1B1AJZ9 1412 aa20.62■□□□□ 0.89
SMAD3-207ENST00000558763 SYNJ2O15056 1496 aa20.57■□□□□ 0.88
SMAD3-207ENST00000558763 FBLN2P98095 1184 aa20.56■□□□□ 0.88
SMAD3-207ENST00000558763 CHMP7Q8WUX9 453 aaPredicted RBP20.54■□□□□ 0.88
SMAD3-207ENST00000558763 CHD1O14646 1710 aa20.52■□□□□ 0.88
SMAD3-207ENST00000558763 GRIN2AQ12879 1464 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms